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Gene: Wdr82 (WD repeat domain 82) Rattus norvegicus

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Symbol:

Wdr82

Name:

WD repeat domain 82

RGD ID:

1584269

Description:

Predicted to enable chromatin binding activity and lncRNA binding activity. Predicted to be involved in RNA metabolic process and regulation of DNA-templated transcription. Predicted to act upstream of or within gene expression. Predicted to be located in chromatin; chromosome, telomeric region; and nucleolus. Predicted to be part of PTW/PP1 phosphatase complex and Set1C/COMPASS complex. Orthologous to human WDR82 (WD repeat domain 82); PARTICIPATES IN histone modification pathway; INTERACTS WITH bisphenol A; paracetamol; (+)-catechin (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC686295; similar to CG17293-PA; uncharacterized protein LOC686295; WD repeat-containing protein 82

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	WDR82 (WD repeat domain 82)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Wdr82 (WD repeat domain containing 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Wdr82 (WD repeat domain 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	WDR82 (WD repeat domain 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	WDR82 (WD repeat domain 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Wdr82 (WD repeat domain 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	WDR82 (WD repeat domain 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	WDR82 (WD repeat domain 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Wdr82 (WD repeat domain 82)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Wdr82 (WD repeat domain containing 82)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Wdr82 (WD repeat domain containing 82)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Homo sapiens (human):	WDR82 (WD repeat domain 82)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	WDR82 (WD repeat domain 82)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	wdr82 (WD repeat domain 82)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG3515	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	SWD2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	swd-2.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	swd-2.1	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Wdr82	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	swd-2.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	wdr82	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Related Pseudogenes:

Wdr82-ps2

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	115,693,297 - 115,713,262 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	115,693,315 - 115,713,242 (+)	Ensembl				GRCr8
mRatBN7.2	8	106,814,569 - 106,834,535 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	106,814,569 - 106,834,438 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	112,439,133 - 112,459,117 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	110,638,294 - 110,658,278 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	108,481,100 - 108,501,084 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	114,866,769 - 114,886,208 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	114,866,768 - 114,884,635 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	114,230,824 - 114,249,590 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	8	106,137,320 - 106,156,763 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

congenital disorder of glycosylation In (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

3,4-methylenedioxymethamphetamine (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

chlorpyrifos (ISO)

clofibrate (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

FR900359 (ISO)

ivermectin (ISO)

methapyrilene (ISO)

methyl methanesulfonate (ISO)

nitrates (ISO)

paracetamol (EXP,ISO)

perfluorooctane-1-sulfonic acid (ISO)

resveratrol (ISO)

SB 431542 (ISO)

senecionine (ISO)

sodium arsenite (ISO)

thiram (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

DNA-templated transcription termination (IEA)

gene expression (IEA,ISO)

lncRNA catabolic process (IEA,ISO)

negative regulation of DNA-templated transcription, elongation (IEA,ISO)

negative regulation of lncRNA transcription (IEA,ISO)

nuclear RNA surveillance (IEA,ISO)

positive regulation of transcription elongation by RNA polymerase II (IEA,ISO)

RNA polymerase II promoter clearance (IEA,ISO)

Cellular Component

chromatin (IEA,ISO)

chromosome, telomeric region (IEA,ISO)

histone methyltransferase complex (IEA,ISO)

nucleolus (IEA,ISO)

nucleus (IEA,ISO)

PTW/PP1 phosphatase complex (IEA,ISO)

Set1C/COMPASS complex (IBA,IEA,ISO)

Molecular Function

chromatin binding (IBA,IEA,ISO)

lncRNA binding (IEA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

histone modification pathway (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Comprehensive gene review and curation	RGD comprehensive gene curation
4.	The COMPASS family of histone H3K4 methylases: mechanisms of regulation in development and disease pathogenesis.	Shilatifard A Annu Rev Biochem. 2012;81:65-95. doi: 10.1146/annurev-biochem-051710-134100.

Additional References at PubMed

PMID:12477932	PMID:17355966	PMID:17998332	PMID:18838538	PMID:20516061	PMID:21123813	PMID:22252316	PMID:24270157

Genomics

Comparative Map Data

Wdr82
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	115,693,297 - 115,713,262 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	115,693,315 - 115,713,242 (+)	Ensembl				GRCr8
mRatBN7.2	8	106,814,569 - 106,834,535 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	106,814,569 - 106,834,438 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	112,439,133 - 112,459,117 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	110,638,294 - 110,658,278 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	108,481,100 - 108,501,084 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	114,866,769 - 114,886,208 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	114,866,768 - 114,884,635 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	114,230,824 - 114,249,590 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Celera	8	106,137,320 - 106,156,763 (+)	NCBI		Celera
Cytogenetic Map	8	q32	NCBI

WDR82
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	52,254,434 - 52,278,649 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	52,254,434 - 52,288,020 (-)	Ensembl			hg38	GRCh38
GRCh37	3	52,288,450 - 52,312,665 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	52,263,478 - 52,287,699 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	3	52,267,750 - 52,291,971 (-)	NCBI		Celera
Cytogenetic Map	3	p21.2	NCBI
HuRef	3	52,350,624 - 52,374,836 (-)	NCBI		HuRef
CHM1_1	3	52,240,980 - 52,265,189 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	52,287,321 - 52,311,534 (-)	NCBI		T2T-CHM13v2.0

Wdr82
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	106,048,098 - 106,068,905 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	106,048,127 - 106,068,338 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	106,170,925 - 106,191,706 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	106,170,928 - 106,191,139 (+)	Ensembl			mm10	GRCm38
MGSCv37	9	106,073,260 - 106,094,037 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	106,029,027 - 106,051,091 (+)	NCBI		MGSCv36	mm8
Celera	9	105,795,931 - 105,817,446 (+)	NCBI		Celera
Cytogenetic Map	9	F1	NCBI
cM Map	9	57.46	NCBI

Wdr82
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955532	3,863,492 - 3,880,713 (-)	Ensembl
ChiLan1.0	NW_004955532	3,860,785 - 3,880,714 (-)	NCBI	ChiLan1.0	ChiLan1.0

WDR82
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	52,249,908 - 52,274,177 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	52,255,184 - 52,278,935 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	52,196,740 - 52,220,982 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	53,426,125 - 53,450,170 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	53,426,112 - 53,450,170 (-)	Ensembl			panPan2	panpan1.1

WDR82
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	37,494,633 - 37,513,746 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	37,355,494 - 37,511,125 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	37,476,200 - 37,495,302 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	37,845,019 - 37,864,288 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	37,845,315 - 37,864,286 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	37,208,709 - 37,227,979 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	37,617,461 - 37,636,557 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	37,902,068 - 37,921,338 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Wdr82
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	66,807,437 - 66,831,322 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936529	3,568,184 - 3,592,084 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936529	3,569,354 - 3,591,815 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

WDR82
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	34,387,808 - 34,412,140 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	34,387,799 - 34,412,190 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	37,593,058 - 37,617,540 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

WDR82
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	13,617,169 - 13,638,896 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666041	153,263,001 - 153,286,724 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Wdr82
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624730	6,032,426 - 6,067,303 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Variants

Variants in Wdr82
50 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	168
Count of miRNA genes:	126
Interacting mature miRNAs:	138
Transcripts:	ENSRNOT00000074771
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1549909	Stresp11	Stress response QTL 11	6.83	0.0019	stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	8	73473045	118473045	Rat
1554321	Bmd3	Bone mineral density QTL 3	7.9	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	40952565	123900184	Rat
9590292	Uminl3	Urine mineral level QTL 3	3.62	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	8	71888757	116888757	Rat
738011	Anxrr9	Anxiety related response QTL 9	6.1		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	8	93535351	123900184	Rat
8693654	Alc32	Alcohol consumption QTL 32	2	0.755	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	8	88612425	107550209	Rat
1358912	Bw51	Body weight QTL 51	2.95		body mass (VT:0001259)	body weight (CMO:0000012)	8	51351728	107062046	Rat
738014	Anxrr15	Anxiety related response QTL 15	3.6	0.005	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	8	95718998	123900184	Rat
1300171	Bp184	Blood pressure QTL 184	3.66		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	8	70513503	118219066	Rat
2313400	Anxrr25	Anxiety related response QTL 25			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	8	89265192	114019816	Rat
2303171	Bp331	Blood pressure QTL 331	5.57	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	61290298	119084929	Rat
631210	Bw3	Body weight QTL3	5.9		mesenteric fat pad mass (VT:0010427)	mesenteric fat pad weight to body weight ratio (CMO:0000654)	8	69349194	112783834	Rat
1358903	Bp252	Blood pressure QTL 252	7	0.0001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
8694446	Bw170	Body weight QTL 170	12.07	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	8	71888757	116888757	Rat
631650	Stl6	Serum triglyceride level QTL 6	4	0.0019	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	8	10378157	112202585	Rat
631653	Bp125	Blood pressure QTL 125	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	66142385	111142385	Rat
1581557	Eae16	Experimental allergic encephalomyelitis QTL 16	3.8		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	8	8462195	110921472	Rat
724539	Cm19	Cardiac mass QTL 19	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	8	100149864	120994388	Rat
70197	BpQTLcluster8	Blood pressure QTL cluster 8	3.482		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	8	46531639	119088626	Rat
2300182	Bmd56	Bone mineral density QTL 56	5.4		femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	95718998	123900184	Rat
2300181	Bmd55	Bone mineral density QTL 55	5.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	8	76468691	121468691	Rat
631217	Activ1	Activity QTL 1	15.9		voluntary movement trait (VT:0003491)	number of photobeam interruptions in an experimental apparatus (CMO:0001517)	8	102370617	108923645	Rat
1358893	Bp263	Blood pressure QTL 263	5.01		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	93965141	123900184	Rat
8694200	Abfw4	Abdominal fat weight QTL 4	9.07	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	8	71888757	116888757	Rat
8694392	Bw161	Body weight QTL 161	8.06	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	8	71888757	116888757	Rat
61437	Cia6	Collagen induced arthritis QTL 6			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	8	82460758	122812818	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC088282	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473954	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000074771 ⟹ ENSRNOP00000064523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	115,693,315 - 115,708,549 (+)	Ensembl
mRatBN7.2 Ensembl	8	106,814,569 - 106,829,822 (+)	Ensembl
Rnor_6.0 Ensembl	8	114,867,062 - 114,884,132 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075966 ⟹ ENSRNOP00000068063

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	8	106,814,825 - 106,834,423 (+)	Ensembl
Rnor_6.0 Ensembl	8	114,876,146 - 114,884,635 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076731 ⟹ ENSRNOP00000068259

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	8	114,866,768 - 114,867,222 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000096974 ⟹ ENSRNOP00000095017

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	115,693,315 - 115,713,242 (+)	Ensembl
mRatBN7.2 Ensembl	8	106,814,837 - 106,834,438 (+)	Ensembl

RefSeq Acc Id:

NM_001271306 ⟹ NP_001258235

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	115,693,297 - 115,713,262 (+)	NCBI
mRatBN7.2	8	106,814,569 - 106,834,535 (+)	NCBI
Rnor_6.0	8	114,866,769 - 114,886,208 (+)	NCBI
Rnor_5.0	8	114,230,824 - 114,249,590 (+)	NCBI
Celera	8	106,137,320 - 106,156,763 (+)	NCBI

Sequence:

show sequence

GATTTTGCTTCTCCCTTTAAGATGGCGGACACAATGAGCCGGCGGAGCGCCGGTTGGCCCTGAA
GTGACTCTGGAGAACGGTCAGCGAGGTCCCGTCATCCCGGCAAGAGAGCGTTGCTTGAGGAAGA
AAACGCCGCAGTCCCACTGTCAGCCGCCTTCCCGTTCGTCTCTAGCGCGGCGCCCGCACCGCCG
GGGTTGGCCCTGAGCAGCCCGCCCGCTCGCTCGCCTCTCGGCCCCGCCCCGGCCCTGCGCCGCC
GCCGCTGCCTTCAGCAGCAGCCGCTGCTGCCGCCGCCATGAAGCTGACCGACAGCGTGCTGAGG
AGCTTCCGCGTCGCCAAGGTGTTCCGCGAGAACTCGGACAAGATCAACTGCTTTGACTTCAGTC
CCAATGGGGAGACGGTCATCTCCAGTAGCGATGATGACTCCATCGTGCTCTATGACTGCCAGGA
GGGCAAACCAAAGAGAACCCTGTACAGTAAGAAATATGGTGTGGACCTCATCAGATACACCCAT
GCAGCAAACACAGTCGTTTACAGCTCTAACAAAATAGACGATACTATTCGTTACTTGTCCTTGC
ATGACAATAAATACATCAGATACTTTCCTGGACACAGCAAGAGGGTGGTGGCCTTGTCCATGTC
ACCTGTGGATGACACTTTCATTTCTGGGTCTCTTGATAAGACCATTCGACTCTGGGATCTCCGG
TCTCCTAACTGCCAGGGCCTCATGCATCTACAGGGCAAACCCGTTTGTTCCTTTGATCCAGAAG
GGTTAATTTTTGCTGCAGGTGTCAACTCAGAAATGGTCAAACTTTATGACCTTCGTTCTTTTGA
TAAGGGTCCATTTGCTACCTTTAAGATGCAGTATGATCGGACTTGTGAGTGGACAGGACTTAAG
TTCAGCAACGATGGCAAACTGATACTCATCTCCACCAACGGCAGCTTCATCCGCCTCATTGACG
CATTTAAGGGTGTGGTGATGCACACATTTGGGGGTTATGCTAATAGCAAAGCTGTTACACTCGA
AGCTTCTTTTACTCCAGATTCACAGTTTATTATGATTGGTTCAGAAGATGGCAAAATCCATGTG
TGGAATGGGGAGAGCGGTATAAAGGTAGCTGTACTGGATGGGAAGCACACCGGCCCCATCACCT
GTTTGCAGTTCAACCCCAAGTTTATGACCTTTGCCAGCGCCTGTTCCAACATGGCCTTCTGGTT
ACCCACCATTGATGACTGATCCTGACGCTGCTGGGCTATTTGTACAGTGAGGGCGGCCGACAGG
AAAAAGTCTGAGGTGACTGAGATGACGGTGTTTGATTGATCATTTGACTGGGCCTGGAGAACAT
CTTCCCACGTGGCCTTCCCAGGGATGTGCTGTCCATCTGCTCTAAAGGATTACTTTGCTGAGCG
CCTTCAGGAGGACCCTTGGTGCTGCAGCTTCAGCTGGCACCCAGCCTTCCAGCTCTCACTGCAC
CAAACTCTTCAGAGTGTGACTAGACTTACGATCAGGACACAGAGGGGCGCCTGAACCCCTTCAG
TTGTGAATGTACTTACTGCTGAGGAGCCAGTGAAGTCACCACTCCCCGCACATCCTTCTCACCC
CAGAAATGCATGGGAAGCCGTGGTTCTGGTTTTGAGATGTTAGGGCAGCTCAGCACCCCTTGCC
CTCACCCTGCATGTCTTGTTACTGGGTCTCCCTGTGTAATTAATTGTGGCATTACTCCACAACC
ATCATGTTTCTTAGGTGCCAAACATTTACAAAAATAAGTCTTCATATACCTTGGGGTCAAAGAA
AGGACAAGTACAGAGGACCGTGTCTGTCAGGAGGCTAGTCAGTATTCCTGCACAGGTGGGTGGG
GCAGACCTTGGGCTTAGATGCTGGGTGACAAAGGCCCAAGAGTCTGACAGGGAGGGAGGGGTAG
CAGGTAAATTCTGAGAGCTGAAAGGTTTAGCAGCCTGGTGCACTTCCCCCATCAAGACAATCCC
ACAGTCTCTCTTGTGGGGGATCCTACCGAGCTTGGCTTGTACAAAAGCAAGGTAGTAGTTTATT
TTTGTACCTGAGTCACATCACGTTTTCCTGTGGGCCAGTATTGTGGAATGAGTCTGAGTTGTTT
ACACTGATGCCTTCCTTCCCTGCCCACCACAAATCGTGTACATAGTCAGCAGATGAAACCCCTC
TTCTCCAGCTCCTACCCGAGAGCTGGCTCTAGGCCTGTGTTATATGTTCTATTTAGCTTTTTAT
ATATGACCCTTGATCTGTGTATTTGAACACTGTGTGTGTCCACTTACCTTTGTGCAGACGTGCA
CATTGCGTATGTGTATATGCCTGTCTCATCTAGCTTATCAAGAGTTCGGCAGGAGAGGGAAGCC
TGCGGCCGAGAATGACTCTTTGTGGATAGTGTATGCCACAATCGTTAGTCTTCTCCGTTAACCT
TAGGGATACAACGTGAAGCAGAGCTTCTAGTGTTTGCTGTTTCATGGCAGCTAAGTGGGGGCCT
TGGGTGACTCCCTTGTGCTCTCTAAGCCACACCACGGGGCCCTCTCTACAGTGTTAGAATCTTT
TGCCTGATTATGCTCTGTCTGCACCTGTATATGTGTGGCAGTCACTTTTGCATGGCTTCTGTGC
CTGGCTTGTGGCATTTAGGGACAGGGTGCTGGAACCACAGTGTTTTTAGTTTGTCAGAACTTAA
TTGGCCAACAATAAGTCACTGTCACCTGCTGTGTCTACACTGTTGCCCTTTTTCTTGCTTTTTC
CTGAGAGACTTTTAGCTAGACCCAGACTAGATGAGTTGCAGTTGACCTTTCCTTCCCAGCATGG
CAGCCTTAGAGTAGGACAAATGGCTGTCAAATACTGATGCAGCGATATCCCTGCACATCCAGAA
ATCAAGACCCAGCAGGCTGTGATTTGCCCAAGAGTACCCAGCTGTAGCGGGTGGCAGGCAGGCC
GTCACTGCTTCTGTGCAGCAGCAGACAGTCTTCCAGTCACCAACGCTACTTTTTAAGCAATTAC
TTTTTGACTTGTTATTCCAACTGAAAGAAGTTGGACTGATACTGAAGTCTGTAAGCACTGCTGA
ACACTCCTGCTATAAATGTCTGCCTTCCCGGAGCAGACCACTGTAGGAACCAGGCGACCGGAGC
TGTTACTGCCTACCTTCAGGGTTTAAAAGCCCATGTCCAAAAGACCCATTGAGGGCAAATGTCT
AACTGTAGGTGAATATGGCTGCATGGCCTGAAAGTAAGAGTGGCTTGCCTGACCGCAGGAAGTC
GTCTGAGTGTCCAGAGTTGAGGCATCATGCTTTTGGAAGGCATACTTCCTGCCCACAGCCTCTG
CTGGGCCCTGTGGCCACAGAGCTGAGTTCTGAATTGGTAGGAAAAGGTGCAACTGGAATTTACA
TGGTCACAGGGTAAGAAAGAGGGAAAGCAGAGATGGCAGTTTGGGGTATGTTCCTGGGACGTAT
TCACTGTCCTCTGAAAGATCAGCCAGAGCCGCTGCTCTGTATGTGACAGCTGACACTGCACTGT
TCAACCACCAGCCACTGGGGTATTTTTTAATAAATTATTCCCTGTTGTAATTGACAATTACTGC
TTATGAAGGAAAATTGGGAGATCTTTAAGAACCAGTTTGCTACCCAATGGTACCACTGTTAATC
TTGATGTTAAATGTTCCTTTAGATATCTCTGTGCATAAACTTTGGTGTTTACATAGTTGTTATT
CTACTGTACATACAATTTTGTCCTTTTTGTACTTAACATATAAACTTTTTTTTGCCATGTTACC
AGTCTTAAACAGAATTTTATAATTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001258235	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL77331	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000064523.3
	ENSRNOP00000068063.2
	ENSRNOP00000095017
	ENSRNOP00000095017.1

RefSeq Acc Id:

NP_001258235 ⟸ NM_001271306

- UniProtKB:

A0A096MJB3 (UniProtKB/TrEMBL), A6I2P5 (UniProtKB/TrEMBL), A0A8I6AN51 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKLTDSVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLYSKKY
GVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDDTFISGSLD
KTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFDKGPFATFKMQYD
RTCEWTGLKFSNDGKLILISTNGSFIRLIDAFKGVVMHTFGGYANSKAVTLEASFTPDSQFIMI
GSEDGKIHVWNGESGIKVAVLDGKHTGPITCLQFNPKFMTFASACSNMAFWLPTIDD

hide sequence

Ensembl Acc Id:

ENSRNOP00000068063 ⟸ ENSRNOT00000075966

Ensembl Acc Id:

ENSRNOP00000064523 ⟸ ENSRNOT00000074771

Ensembl Acc Id:

ENSRNOP00000068259 ⟸ ENSRNOT00000076731

Ensembl Acc Id:

ENSRNOP00000095017 ⟸ ENSRNOT00000096974

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-M0R565-F1-model_v2	AlphaFold	M0R565	1-313	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696243

Promoter ID:

EPDNEW_R6767

Type:

initiation region

Name:

Wdr82_1

Description:

WD repeat domain 82

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	114,866,769 - 114,866,829	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1584269	AgrOrtholog
BioCyc Gene	G2FUF-29255	BioCyc
Ensembl Genes	ENSRNOG00000048441	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000074771.4	UniProtKB/TrEMBL
	ENSRNOT00000075966.2	UniProtKB/TrEMBL
	ENSRNOT00000096974	ENTREZGENE
	ENSRNOT00000096974.1	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
InterPro	G-protein_beta_WD-40_rep	UniProtKB/TrEMBL
	Swd2/WDR82	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
	WD40_repeat	UniProtKB/TrEMBL
	WD40_repeat_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:686295	UniProtKB/TrEMBL
NCBI Gene	686295	ENTREZGENE
PANTHER	PTHR19861	UniProtKB/TrEMBL
	WD REPEAT-CONTAINING PROTEIN 82	UniProtKB/TrEMBL
Pfam	WD40	UniProtKB/TrEMBL
PhenoGen	Wdr82	PhenoGen
PRINTS	GPROTEINBRPT	UniProtKB/TrEMBL
PROSITE	WD_REPEATS_2	UniProtKB/TrEMBL
	WD_REPEATS_REGION	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000048441	RatGTEx
SMART	WD40	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50978	UniProtKB/TrEMBL
UniProt	A0A096MJB3	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AN51	ENTREZGENE, UniProtKB/TrEMBL
	A6I2P5	ENTREZGENE, UniProtKB/TrEMBL
	M0R565_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2013-08-16	Wdr82	WD repeat domain 82	LOC686295	similar to CG17293-PA	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC686295	similar to CG17293-PA			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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