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retina development in camera-type eye - Ontology Report - Rat Genome Database

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ONTOLOGY REPORT - ANNOTATIONS

Term:retina development in camera-type eye
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Accession:GO:0060041 term browser browse the term
Definition:The process whose specific outcome is the progression of the retina over time, from its formation to the mature structure. The retina is the innermost layer or coating at the back of the eyeball, which is sensitive to light and in which the optic nerve terminates.
Synonyms:exact_synonym: retina development in camera-style eye
 related_synonym: retinal development
 alt_id: GO:0002073

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retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase acts_upstream_of_or_within ISO
IEA 		MGI:2179948 (PMID:15579149)
GO_REF:0000107 		RGD
Ensembl		 PMID:15579149 GO_REF:0000107 NCBI chr12:25,042,882...25,050,608
Ensembl chr12:19,407,360...19,413,651 		JBrowse link
G Actb actin, beta IEP RGD PMID:22916200 RGD:9587758 NCBI chr12:16,776,664...16,779,634
Ensembl chr12:11,663,109...11,672,877 		JBrowse link
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 acts_upstream_of_or_within ISO MGI:1856535 (PMID:21052544), (PMID:24791901) RGD PMID:21052544 PMID:24791901 NCBI chr17:5,092,108...5,244,414
Ensembl chr17:5,120,609...5,238,869 		JBrowse link
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within ISO MGI:4360696 (PMID:20592197) RGD PMID:20592197 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:31302159) RGD PMID:31302159 NCBI chr 4:119,683,085...119,783,471
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:1857951 (PMID:10982921) RGD PMID:10982921 NCBI chr18:26,138,382...26,196,021
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Arsg arylsulfatase G acts_upstream_of_or_within ISO
IEA 		(PMID:26975023)
GO_REF:0000107 		RGD
Ensembl		 PMID:26975023 GO_REF:0000107 NCBI chr10:94,912,094...95,063,021
Ensembl chr10:94,447,399...94,542,941 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO
IEA 		MGI:1857429 (PMID:9699561)
GO_REF:0000107 		RGD
Ensembl		 PMID:9699561 GO_REF:0000107 NCBI chr 1:105,076,472...105,081,906
Ensembl chr 1:95,938,808...95,945,368 		JBrowse link
G Bbs1 Bardet-Biedl syndrome 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:31302159) 		Ensembl
RGD		 PMID:31302159 GO_REF:0000107 NCBI chr 1:211,614,195...211,633,504
Ensembl chr 1:202,186,125...202,204,086 		JBrowse link
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA 		(PMID:31302159), (PMID:36125046), (PMID:36700052)
GO_REF:0000107 		RGD
Ensembl		 PMID:31302159 PMID:36125046 PMID:36700052 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:17069773 RGD:2289001 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2158497 (PMID:12654290) 		Ensembl
RGD		 PMID:12654290 GO_REF:0000107 NCBI chr 2:233,211,525...233,544,344
Ensembl chr 2:230,541,558...230,871,368 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 IEP RGD PMID:10482474 RGD:5129487 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO (PMID:28057640) RGD PMID:28057640 NCBI chr 9:2,174,412...2,201,339
Ensembl chr 9:2,087,437...2,114,429 		JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F acts_upstream_of_or_within ISO MGI:3605845 (PMID:21052544) RGD PMID:21052544 NCBI chr  X:17,539,992...17,568,308
Ensembl chr  X:14,868,024...14,896,413 		JBrowse link
G Calb1 calbindin 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:10741426) 		Ensembl
RGD		 PMID:10741426 GO_REF:0000107 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO (PMID:21052544), (PMID:31302159) RGD PMID:21052544 PMID:31302159 NCBI chr 7:37,196,765...37,285,955
Ensembl chr 7:35,310,199...35,399,392 		JBrowse link
G Cfd complement factor D acts_upstream_of_or_within ISO (PMID:28057640) RGD PMID:28057640 NCBI chr 7:10,463,773...10,465,496
Ensembl chr 7:9,813,150...9,815,053 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within_positive_effect ISO (PMID:30705315)
(PMID:17921253), (PMID:28057640) 		RGD PMID:17921253 PMID:28057640 PMID:30705315 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO
IEA 		(PMID:15300250)
GO_REF:0000107 		RGD
Ensembl		 PMID:15300250 GO_REF:0000107 NCBI chr 5:26,609,245...26,792,736
Ensembl chr 5:21,812,070...21,995,358 		JBrowse link
G Clcn2 chloride voltage-gated channel 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21052544) 		Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr11:93,702,382...93,716,059
Ensembl chr11:80,198,153...80,211,657 		JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO
IEA 		MGI:1856959 (PMID:15565184), (PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:15565184 PMID:21052544 GO_REF:0000107 NCBI chr16:81,451,941...81,462,046
Ensembl chr16:74,749,662...74,759,774 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:1353425|MGI:95778 (PMID:21124780) RGD PMID:21124780 NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA 		(PMID:22447858), (PMID:25147295)
GO_REF:0000107 		RGD
Ensembl		 PMID:22447858 PMID:25147295 GO_REF:0000107 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Crx cone-rod homeobox acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 1:85,667,971...85,681,852
Ensembl chr 1:76,540,141...76,545,818 		JBrowse link
G Dclk1 doublecortin-like kinase 1 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:141,567,215...141,861,088
Ensembl chr 2:139,417,163...139,710,956 		JBrowse link
G Dcx doublecortin involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr  X:107,430,767...107,573,612
Ensembl chr  X:107,430,767...107,507,476 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO
ISS 		(PMID:19389377)
GO_REF:0000024 		RGD
UniProt		 PMID:19389377 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Dram2 DNA damage regulated autophagy modulator 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:37691820) 		Ensembl
RGD		 PMID:37691820 GO_REF:0000107 NCBI chr 2:196,724,052...196,752,645
Ensembl chr 2:194,035,818...194,063,403 		JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18778704 RGD:7175073 NCBI chr 1:205,825,937...205,829,124
Ensembl chr 1:196,396,366...196,399,553 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IEP RGD PMID:23954924 RGD:11251759 NCBI chr17:19,891,313...19,982,770
Ensembl chr17:19,685,215...19,776,661 		JBrowse link
G Elp6 elongator acetyltransferase complex subunit 6 acts_upstream_of_or_within ISO (PMID:27715390) RGD PMID:27715390 NCBI chr 8:119,158,380...119,173,483
Ensembl chr 8:110,279,979...110,295,067 		JBrowse link
G Gdnf glial cell derived neurotrophic factor IEP RGD PMID:16650834 RGD:2324945 NCBI chr 2:58,621,327...58,647,242
Ensembl chr 2:56,895,010...56,917,209 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1341818|MGI:1353425 (PMID:21052544), (PMID:21124780)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 PMID:21124780 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnb1 G protein subunit beta 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 5:171,357,778...171,424,489
Ensembl chr 5:166,075,629...166,142,124 		JBrowse link
G Grm6 glutamate metabotropic receptor 6 acts_upstream_of_or_within ISO
IEA 		MGI:3605835 (PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr10:35,669,003...35,683,729
Ensembl chr10:35,167,985...35,182,717 		JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO MGI:3762618 (PMID:28728022) RGD PMID:28728022 NCBI chr10:87,887,834...87,893,938
Ensembl chr10:87,387,638...87,393,775 		JBrowse link
G Hpca hippocalcin IEP RGD PMID:7789406 RGD:9686441 NCBI chr 5:141,455,616...141,466,252
Ensembl chr 5:141,455,613...141,463,841 		JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:251,500,427...251,526,529
Ensembl chr 1:241,551,175...241,577,268 		JBrowse link
G Il4 interleukin 4 IEP RGD PMID:23070471 RGD:7829830 NCBI chr10:38,272,003...38,277,549
Ensembl chr10:37,771,203...37,776,750 		JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 4:58,767,230...58,782,825
Ensembl chr 4:57,801,831...57,819,076 		JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 8:118,135,204...118,139,892
Ensembl chr 8:109,256,728...109,261,359 		JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase acts_upstream_of_or_within ISO
IEA 		MGI:3580706 (PMID:15345036)
GO_REF:0000107 		RGD
Ensembl		 PMID:15345036 GO_REF:0000107 NCBI chr10:102,539,935...102,545,986
Ensembl chr10:102,041,120...102,047,182 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lamb2 laminin subunit beta 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1344394 (PMID:19907020) 		Ensembl
RGD		 PMID:19907020 GO_REF:0000107 NCBI chr 8:118,056,899...118,069,090
Ensembl chr 8:109,178,409...109,190,549 		JBrowse link
G Lamc3 laminin subunit gamma 3 acts_upstream_of_or_within ISO MGI:99916 (PMID:19907020) RGD PMID:19907020 NCBI chr 3:35,562,989...35,624,460
Ensembl chr 3:15,165,220...15,226,697 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107 		RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO
IEA 		(PMID:10741426)
GO_REF:0000107 		RGD
Ensembl		 PMID:10741426 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lhx2 LIM homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:97490 (PMID:19146846)
GO_REF:0000107 		RGD
Ensembl		 PMID:19146846 GO_REF:0000107 NCBI chr 3:42,523,345...42,553,646
Ensembl chr 3:22,126,007...22,143,908 		JBrowse link
G Lif LIF, interleukin 6 family cytokine IDA RGD PMID:16643897 RGD:2326157 NCBI chr14:83,354,602...83,364,053
Ensembl chr14:79,134,574...79,140,482 		JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 1:29,766,070...29,816,401
Ensembl chr 1:29,766,071...29,816,401 		JBrowse link
G Max MYC associated factor X IEP RGD PMID:14603520 RGD:2316820 NCBI chr 6:101,369,989...101,395,333
Ensembl chr 6:95,636,858...95,662,137 		JBrowse link
G Mdm1 Mdm1 nuclear protein involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:2664154 (PMID:21052544) 		GO_Central
RGD		 PMID:21052544 GO_REF:0000033 NCBI chr 7:53,729,603...53,766,034
Ensembl chr 7:53,729,610...53,766,034 		JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21052544) 		Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 3:136,391,936...136,498,366
Ensembl chr 3:115,939,351...116,046,554 		JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859 		JBrowse link
G Mfsd8 major facilitator superfamily domain containing 8 acts_upstream_of_or_within ISO
IEA 		(PMID:27654426)
GO_REF:0000107 		RGD
Ensembl		 PMID:27654426 GO_REF:0000107 NCBI chr 2:125,749,994...125,784,689
Ensembl chr 2:123,816,614...123,857,971 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within ISO MGI:2676847|MGI:3619440 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:58,784,818...58,784,879
Ensembl chr 4:58,784,818...58,784,879 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:59,756,044...59,756,153
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629), (PMID:28819115) RGD PMID:23341629 PMID:28819115 NCBI chr 4:59,755,841...59,755,946
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:16899069 RGD:2317091 NCBI chr 5:77,853,560...77,967,653
Ensembl chr 5:73,058,121...73,171,932 		JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2386445 (PMID:11283949), (PMID:9356462) 		Ensembl
RGD		 PMID:9356462 PMID:11283949 GO_REF:0000107 NCBI chr10:53,891,955...54,024,032
Ensembl chr10:53,394,389...53,525,165 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1934018 (PMID:26607664) 		Ensembl
RGD		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2676199 (PMID:9071226) 		Ensembl
RGD		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3605480 (PMID:15728677) 		Ensembl
RGD		 PMID:15728677 GO_REF:0000107 NCBI chr 8:52,998,662...53,061,745
Ensembl chr 8:44,101,776...44,189,787 		JBrowse link
G Neurod4 neuronal differentiation 4 IEP RGD PMID:15345241 RGD:2311603 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Nfia nuclear factor I/A acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:6280648 (PMID:31128945) 		Ensembl
RGD		 PMID:31128945 GO_REF:0000107 NCBI chr 5:117,359,006...117,897,391
Ensembl chr 5:112,436,644...112,775,885 		JBrowse link
G Nfib nuclear factor I/B acts_upstream_of_or_within ISO
IEA 		MGI:5052268 (PMID:31128945)
GO_REF:0000107 		RGD
Ensembl		 PMID:31128945 GO_REF:0000107 NCBI chr 5:101,805,168...102,020,618
Ensembl chr 5:96,764,653...96,975,479 		JBrowse link
G Nfix nuclear factor I X acts_upstream_of_or_within ISO MGI:3802570 (PMID:31128945) RGD PMID:31128945 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:23,355,498...23,448,265 		JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:16639026 RGD:7771562 NCBI chr 4:11,686,088...11,706,604
Ensembl chr 4:10,793,834...10,814,166 		JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO (PMID:19208653) RGD PMID:19208653 NCBI chr 3:135,413,927...135,469,505
Ensembl chr 3:114,960,650...115,016,234 		JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706 		JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO
IEA 		MGI:2176490|MGI:2176560 (PMID:11997145), (PMID:16702404)
GO_REF:0000107 		RGD
Ensembl		 PMID:11997145 PMID:16702404 GO_REF:0000107 NCBI chr20:47,632,347...47,653,464
Ensembl chr20:46,050,414...46,073,949 		JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1346317 (PMID:12407160), (PMID:21052544) 		Ensembl
RGD		 PMID:12407160 PMID:21052544 GO_REF:0000107 NCBI chr 8:60,365,581...60,373,383
Ensembl chr 8:60,366,124...60,373,163 		JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IEP RGD PMID:22714110 RGD:124713571 NCBI chr 3:62,098,739...62,115,926
Ensembl chr 3:41,689,851...41,697,877 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO
IEA 		(PMID:25542970)
GO_REF:0000107 		RGD
Ensembl		 PMID:25542970 GO_REF:0000107 NCBI chr17:5,560,558...5,875,899
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:15505078 RGD:1547836 NCBI chr11:84,612,943...84,690,025
Ensembl chr11:71,109,873...71,185,109 		JBrowse link
G Opn4 opsin 4 acts_upstream_of_or_within ISO MGI:1341818|MGI:95778 (PMID:21124780) RGD PMID:21124780 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711 		JBrowse link
G Pax4 paired box 4 involved_in IEP
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:19012751 GO_REF:0000033, RGD:2311636 NCBI chr 4:58,023,873...58,032,265
Ensembl chr 4:57,058,462...57,063,408 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in 		IEP
IEA
ISO
IBA 		GO_REF:0000107
MGI:96785 (PMID:19146846)
GO_REF:0000033 		Ensembl
RGD
GO_Central		 PMID:19146846 PMID:19012751 GO_REF:0000033 GO_REF:0000107, RGD:2311636 NCBI chr 3:112,590,034...112,611,771
Ensembl chr 3:92,135,637...92,157,014 		JBrowse link
G Pde6a phosphodiesterase 6A involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
(PMID:21052544) 		GO_Central
RGD		 PMID:21052544 GO_REF:0000033 NCBI chr18:54,676,863...54,748,640
Ensembl chr18:54,676,863...54,748,816 		JBrowse link
G Pde6b phosphodiesterase 6B acts_upstream_of_or_within
involved_in 		IEA
ISO
IBA 		GO_REF:0000107
(PMID:21052544)
GO_REF:0000033 		Ensembl
RGD
GO_Central		 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pfdn5 prefoldin subunit 5 acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 7:135,330,364...135,335,102
Ensembl chr 7:133,451,453...133,456,516 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2176272|MGI:3582493 (PMID:8637595), (PMID:9630743) 		Ensembl
RGD		 PMID:8637595 PMID:9630743 GO_REF:0000107 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO
IEA 		MGI:1856523|MGI:6367794|MGI:97998 (PMID:15964665), (PMID:21052544), (PMID:28053051)
GO_REF:0000107 		RGD
Ensembl		 PMID:15964665 PMID:21052544 PMID:28053051 GO_REF:0000107 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 PMID:8453763 RGD:9831439, RGD:9831456 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (PMID:11562477) RGD PMID:11562477 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
G Rd3 RD3 regulator of GUCY2D acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		(PMID:21052544)
GO_REF:0000107
GO_REF:0000033
(PMID:8486383) 		RGD
Ensembl
GO_Central		 PMID:8486383 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622 		JBrowse link
G Ret ret proto-oncogene IEP RGD PMID:16650834 RGD:2324945 NCBI chr 4:152,998,344...153,040,556
Ensembl chr 4:151,326,431...151,368,176 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21052544) 		Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
G Rnpep arginyl aminopeptidase IEP RGD PMID:15500823 RGD:2325937 NCBI chr13:49,251,259...49,271,440
Ensembl chr13:46,699,463...46,717,998 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:102791|MGI:2181662 (PMID:28053051)
GO_REF:0000107 		RGD
Ensembl		 PMID:28053051 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO 		GO_REF:0000024
(PMID:23652001) 		UniProt
RGD		 PMID:23652001 GO_REF:0000024 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:21052544) 		GO_Central
Ensembl
RGD		 PMID:21052544 GO_REF:0000033 GO_REF:0000107 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rp1l1 RP1 like 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr15:38,259,907...38,271,269
Ensembl chr15:38,259,928...38,270,316 		JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr15:27,282,997...27,341,021
Ensembl chr15:24,814,614...24,868,605 		JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within ISO MGI:1856685 (PMID:10049578), (PMID:9331275) RGD PMID:9331275 PMID:10049578 NCBI chr11:58,122,997...58,128,405
Ensembl chr11:44,653,937...44,659,370 		JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 IEP RGD PMID:2647502 RGD:5133699 NCBI chr 1:166,235,904...166,260,206
Ensembl chr 1:156,823,960...156,848,261 		JBrowse link
G Scaper S-phase cyclin A-associated protein in the ER acts_upstream_of_or_within ISO (PMID:28794130) RGD PMID:28794130 NCBI chr 8:64,828,789...65,228,240
Ensembl chr 8:55,933,306...56,332,122 		JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:21738387 RGD:8655555 NCBI chr10:60,748,504...60,760,898
Ensembl chr10:60,249,708...60,262,646 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:17003410) RGD PMID:17003410 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:165,714,093...165,782,733 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:28703795) 		Ensembl
RGD		 PMID:28703795 GO_REF:0000107 NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO
IEA 		(PMID:37862028)
GO_REF:0000107 		RGD
Ensembl		 PMID:37862028 GO_REF:0000107 NCBI chr19:64,432,524...64,468,852
Ensembl chr19:47,525,301...47,554,726 		JBrowse link
G Slc4a5 solute carrier family 4 member 5 acts_upstream_of_or_within ISO (PMID:21705333) RGD PMID:21705333 NCBI chr 4:117,267,803...117,368,024
Ensembl chr 4:115,725,592...115,810,323 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:98371 (PMID:19490914) 		UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:15,089,357...15,094,345
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:98370 (PMID:19490914) 		UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4440463 (PMID:20159594) 		Ensembl
RGD		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO
IEA 		MGI:3852642 (PMID:20711468)
GO_REF:0000107 		RGD
Ensembl		 PMID:20711468 GO_REF:0000107 NCBI chr 1:210,556,270...210,568,021
Ensembl chr 1:201,127,034...201,138,742 		JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:26,115,150...26,167,465
Ensembl chr 2:24,380,225...24,432,099 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:18973577) 		Ensembl
RGD		 PMID:18973577 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:165,791,101...165,808,669
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 acts_upstream_of_or_within ISO (PMID:24791901) RGD PMID:24791901 NCBI chr 6:105,483,091...105,700,920
Ensembl chr 6:105,483,191...105,700,934 		JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr 1:172,386,772...172,465,791
Ensembl chr 1:162,951,931...163,026,812 		JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr20:6,412,170...6,424,103
Ensembl chr20:6,412,171...6,424,073 		JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 acts_upstream_of_or_within ISO (PMID:21052544) RGD PMID:21052544 NCBI chr15:84,888,847...84,942,095
Ensembl chr15:78,485,315...78,527,355
Ensembl chr 3:78,485,315...78,527,355 		JBrowse link
G Ush2a usherin IEP RGD PMID:12160733 RGD:634438 NCBI chr13:102,368,783...103,035,230
Ensembl chr13:99,837,445...100,503,922 		JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO
IEA 		(PMID:10595508)
GO_REF:0000107 		RGD
Ensembl		 PMID:10595508 GO_REF:0000107 NCBI chr 4:116,195,528...116,219,597
Ensembl chr 4:116,195,528...116,219,594 		JBrowse link
G Xrn2 5'-3' exoribonuclease 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 3:154,888,558...154,962,519
Ensembl chr 3:134,437,109...134,509,306 		JBrowse link
G Zfp513 zinc finger protein 513 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20797688) 		UniProt
Ensembl
RGD		 PMID:20797688 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:25,174,181...25,177,442
Ensembl chr 6:25,174,178...25,177,439 		JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Barhl2 BarH-like homeobox 2 acts_upstream_of_or_within ISO
IEA 		(PMID:14998930)
GO_REF:0000107 		RGD
Ensembl		 PMID:14998930 GO_REF:0000107 NCBI chr14:3,340,465...3,345,362
Ensembl chr14:3,340,465...3,345,353 		JBrowse link
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within ISO MGI:5295415 (PMID:21903076) RGD PMID:21903076 NCBI chr 8:12,691,470...13,274,336
Ensembl chr 8:12,694,019...13,273,135 		JBrowse link
G Foxn4 forkhead box N4 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:15363391)
GO_REF:0000107
MGI:3054789 (PMID:15363391) 		RGD
Ensembl		 PMID:15363391 GO_REF:0000107 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of IEA
ISO 		GO_REF:0000107
(PMID:15976303) 		Ensembl
RGD		 PMID:15976303 GO_REF:0000107 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO
IEA 		MGI:2149672 (PMID:16038893)
GO_REF:0000107 		RGD
Ensembl		 PMID:16038893 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:90,468,696...90,556,522
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO (PMID:20459797) RGD PMID:20459797 NCBI chr12:50,075,026...50,090,259 JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11861467) 		UniProt
RGD		 PMID:11861467 GO_REF:0000024 NCBI chr 3:84,766,483...84,770,454
Ensembl chr 3:64,359,395...64,363,649 		JBrowse link
G Neurod4 neuronal differentiation 4 involved_in ISO
IEA 		(PMID:11861467)
GO_REF:0000107 		RGD
Ensembl		 PMID:11861467 GO_REF:0000107 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:3701996 (PMID:17301087)
(PMID:17075007) 		UniProt
Ensembl
RGD		 PMID:17075007 PMID:17301087 GO_REF:0000024 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO 		GO_REF:0000024
(PMID:23652001) 		UniProt
RGD		 PMID:23652001 GO_REF:0000024 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of ISO
IEA 		(PMID:18973577)
GO_REF:0000107 		RGD
Ensembl		 PMID:18973577 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:165,791,101...165,808,669
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IBA
IEA 		(PMID:18654668)
GO_REF:0000033
(PMID:19228982)
GO_REF:0000107 		RGD
GO_Central
Ensembl		 PMID:18654668 PMID:19228982 GO_REF:0000033 GO_REF:0000107 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:20300562) 		Ensembl
RGD		 PMID:20300562 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO
IEA 		(PMID:26287463)
GO_REF:0000107 		RGD
Ensembl		 PMID:26287463 GO_REF:0000107 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO GO:0060219 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO
IEA 		MGI:5140723 (PMID:21646512)
GO_REF:0000107 		RGD
Ensembl		 PMID:21646512 GO_REF:0000107 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1934258 (PMID:18582859)
GO_REF:0000107 		RGD
Ensembl		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO
IEA 		(PMID:36125046)
GO_REF:0000107 		RGD
Ensembl		 PMID:36125046 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA 		MGI:5051274|MGI:6163746 (PMID:23580486), (PMID:29518352)
GO_REF:0000107 		RGD
Ensembl		 PMID:23580486 PMID:29518352 GO_REF:0000107 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1934018 (PMID:26607664) 		Ensembl
RGD		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2676199 (PMID:9071226) 		Ensembl
RGD		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO
IEA 		MGI:2653120 (PMID:19754878)
GO_REF:0000107 		RGD
Ensembl		 PMID:19754878 GO_REF:0000107 NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:20579985) 		Ensembl
RGD		 PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO
IEA
ISS 		(PMID:18094249)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:18094249 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:4415718 (PMID:19653321) RGD PMID:19653321 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO
IEA 		(PMID:12692551)
GO_REF:0000107 		RGD
Ensembl		 PMID:12692551 GO_REF:0000107 NCBI chr13:104,196,615...104,251,007
Ensembl chr13:101,669,184...101,711,183 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:10469643) RGD PMID:10469643 NCBI chr 1:245,306,349...245,313,551
Ensembl chr 1:235,893,917...235,901,399 		JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:164,527,083...164,677,037
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:15976303) 		Ensembl
RGD		 PMID:15976303 GO_REF:0000107 NCBI chr 7:1,896,229...1,909,147
Ensembl chr 7:1,311,732...1,320,725 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2149672 (PMID:16038893) 		Ensembl
RGD		 PMID:16038893 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Pou4f2 POU class 4 homeobox 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:21875655) 		UniProt
Ensembl
RGD		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:164,527,083...164,677,037
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in ISO
IEA 		(PMID:18816825)
GO_REF:0000107 		RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 2:117,413,206...117,436,758
Ensembl chr 2:115,492,285...115,508,401 		JBrowse link
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:21441919)
MGI:2159015 (PMID:21441919)
GO_REF:0000107
GO_REF:0000002 		RGD
Ensembl
InterPro		 PMID:21441919 GO_REF:0000002 GO_REF:0000107 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275 		JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 7:35,622,267...35,731,904
Ensembl chr 7:33,735,871...33,843,295 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 4:148,450,207...148,763,653
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 IEP RGD PMID:16079002 RGD:2317729 NCBI chr  X:156,367,582...156,464,085
Ensembl chr  X:151,216,507...151,286,775 		JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 IEP RGD PMID:16079002 RGD:2317729 NCBI chr13:47,708,157...47,807,389
Ensembl chr13:45,156,146...45,255,246 		JBrowse link
G Bsg basigin involved_in ISS
ISO 		GO_REF:0000024
(PMID:10967074), (PMID:11273674), (PMID:11853760) 		UniProt
RGD		 PMID:10967074 PMID:11273674 PMID:11853760 GO_REF:0000024 NCBI chr 7:10,643,788...10,651,005
Ensembl chr 7:9,993,170...10,000,387 		JBrowse link
G Casp2 caspase 2 IEP RGD PMID:9809666 RGD:4107085 NCBI chr 4:72,116,265...72,134,023
Ensembl chr 4:71,149,669...71,167,379 		JBrowse link
G Fos Fos proto-oncogene, AP-1 transcription factor subunit IEP RGD PMID:20589906 RGD:405650605 NCBI chr 6:110,852,188...110,855,054
Ensembl chr 6:105,121,170...105,124,036 		JBrowse link
G Gpm6a glycoprotein m6a involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:18776950) 		UniProt
Ensembl
RGD		 PMID:18776950 GO_REF:0000024 GO_REF:0000107 NCBI chr16:36,641,282...36,973,377
Ensembl chr16:36,641,284...36,973,475 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:2676199 (PMID:15716406)
GO_REF:0000107 		RGD
Ensembl		 PMID:15716406 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Optn optineurin IEP RGD PMID:17687037 RGD:7800681 NCBI chr17:78,118,847...78,169,543
Ensembl chr17:73,209,575...73,260,251 		JBrowse link
G Per1 period circadian regulator 1 IEP RGD PMID:20589906 RGD:405650605 NCBI chr10:54,299,002...54,313,804
Ensembl chr10:53,805,535...53,814,431 		JBrowse link
G Per2 period circadian regulator 2 IEP RGD PMID:20589906 RGD:405650605 NCBI chr 9:99,454,828...99,497,069
Ensembl chr 9:92,007,296...92,049,459 		JBrowse link
G Psen1 presenilin 1 IEP RGD PMID:12401445 RGD:729595 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Rab11fip4 RAB11 family interacting protein 4 acts_upstream_of_or_within IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr10:65,048,070...65,156,086
Ensembl chr10:64,550,177...64,654,759 		JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:2631392 RGD:9585660 NCBI chr 2:251,425,228...251,457,209
Ensembl chr 2:248,766,612...248,798,403 		JBrowse link
G Slc17a6 solute carrier family 17 member 6 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:110,348,447...110,388,499
Ensembl chr 1:101,212,489...101,252,542 		JBrowse link
G Slc17a7 solute carrier family 17 member 7 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:104,786,172...104,798,049
Ensembl chr 1:95,649,745...95,661,588 		JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 7:25,881,557...25,936,837
Ensembl chr 7:23,994,217...24,048,079 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 involved_in ISO
IEA 		(PMID:18816825)
GO_REF:0000107 		RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 8:28,438,370...28,535,071
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 involved_in ISO
IEA 		(PMID:18816825)
GO_REF:0000107 		RGD
Ensembl		 PMID:18816825 GO_REF:0000107 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO
IEA 		(PMID:9217007)
GO_REF:0000107 		RGD
Ensembl		 PMID:9217007 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:21875655)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780 		JBrowse link
G Dlx2 distal-less homeobox 2 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:21875655)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:21875655 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:56,370,238...56,373,581
Ensembl chr 3:56,370,483...56,373,597 		JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:18973577) 		Ensembl
RGD		 PMID:18973577 GO_REF:0000107 NCBI chr 9:118,194,735...118,204,354
Ensembl chr 9:110,720,921...110,757,802 		JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (PMID:18926818) RGD PMID:18926818 NCBI chr 3:165,791,101...165,808,669
Ensembl chr 3:145,333,418...145,348,596
Ensembl chr17:145,333,418...145,348,596 		JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within 		ISO
IEA 		(PMID:12915475)
GO_REF:0000107
(PMID:15316081), (PMID:16885194) 		RGD
Ensembl		 PMID:12915475 PMID:15316081 PMID:16885194 GO_REF:0000107 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule acts_upstream_of_or_within ISO
IEA 		MGI:3761008 (PMID:18216855)
GO_REF:0000107 		RGD
Ensembl		 PMID:18216855 GO_REF:0000107 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO MGI:2668595 (PMID:10097103) RGD PMID:10097103 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792 		JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in IEA
ISO 		GO_REF:0000107
(PMID:22323600) 		Ensembl
RGD		 PMID:22323600 GO_REF:0000107 NCBI chr 3:126,770,945...126,780,769
Ensembl chr 3:106,316,986...106,326,931 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:17075007) 		UniProt
Ensembl
RGD		 PMID:17075007 GO_REF:0000024 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (PMID:20890044) RGD PMID:20890044 NCBI chr 6:14,791,937...14,796,365
Ensembl chr 6:9,036,434...9,053,301 		JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO
IEA 		(PMID:23932931)
GO_REF:0000107 		RGD
Ensembl		 PMID:23932931 GO_REF:0000107 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Arl6 ARF like GTPase 6 acts_upstream_of_or_within ISO
IEA 		MGI:4442928|MGI:5310744 (PMID:20333246), (PMID:22139371)
GO_REF:0000107 		RGD
Ensembl		 PMID:20333246 PMID:22139371 GO_REF:0000107 NCBI chr11:54,180,271...54,207,136
Ensembl chr11:40,712,022...40,737,937 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 involved_in ISO
IEA 		(PMID:24413176)
GO_REF:0000107 		RGD
Ensembl		 PMID:24413176 GO_REF:0000107 NCBI chr15:33,817,309...34,350,193
Ensembl chr15:33,819,755...34,350,223 		JBrowse link
G Calb1 calbindin 1 involved_in ISO
IEA 		(PMID:10741426)
GO_REF:0000107 		RGD
Ensembl		 PMID:10741426 GO_REF:0000107 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO
IEA 		(PMID:17234588)
GO_REF:0000107 		RGD
Ensembl		 PMID:17234588 GO_REF:0000107 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415 		JBrowse link
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1341907 (PMID:21903076) 		Ensembl
RGD		 PMID:21903076 GO_REF:0000107 NCBI chr 8:12,691,470...13,274,336
Ensembl chr 8:12,694,019...13,273,135 		JBrowse link
G Fjx1 four-jointed box kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2444314 (PMID:21903076)
GO_REF:0000107 		RGD
Ensembl		 PMID:21903076 GO_REF:0000107 NCBI chr 3:109,229,223...109,231,324
Ensembl chr 3:88,774,220...88,776,321 		JBrowse link
G Foxn4 forkhead box N4 involved_in ISO
IEA 		(PMID:15363391)
GO_REF:0000107 		RGD
Ensembl		 PMID:15363391 GO_REF:0000107 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO
IEA 		(PMID:20579985)
GO_REF:0000107 		RGD
Ensembl		 PMID:20579985 GO_REF:0000107 NCBI chr 2:193,937,261...193,988,247
Ensembl chr 2:191,248,817...191,298,902 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (PMID:20579985) RGD PMID:20579985 NCBI chr 4:68,399,358...68,586,404
Ensembl chr 4:67,440,501...67,619,223 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107 		RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:10741426), (PMID:18094249) 		UniProt
Ensembl
RGD		 PMID:10741426 PMID:18094249 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,396,829...69,403,617 		JBrowse link
G Megf11 multiple EGF-like-domains 11 involved_in ISO (PMID:22407321) RGD PMID:22407321 NCBI chr 8:73,787,568...74,113,228
Ensembl chr 8:64,892,387...65,216,061 		JBrowse link
G Mir145 microRNA 145 IMP RGD PMID:34291866 RGD:155260301 NCBI chr18:57,369,983...57,370,070
Ensembl chr18:55,099,640...55,099,727 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:2676199 (PMID:29654250)
GO_REF:0000107 		RGD
Ensembl		 PMID:29654250 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Prom1 prominin 1 involved_in ISO (PMID:19228982) RGD PMID:19228982 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:17075007)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:17075007 GO_REF:0000024 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Ptprm protein tyrosine phosphatase, receptor type, M involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:14623235) 		UniProt
Ensembl
RGD		 PMID:14623235 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:114,086,380...114,791,000
Ensembl chr 9:106,639,573...107,343,698 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (PMID:22605914) RGD PMID:22605914 NCBI chr 1:78,415,765...78,444,116
Ensembl chr 1:69,373,113...69,400,908 		JBrowse link
G Rs1 retinoschisin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2179757|MGI:3056058 (PMID:11983912), (PMID:15326152) 		Ensembl
RGD		 PMID:11983912 PMID:15326152 GO_REF:0000107 NCBI chr  X:37,771,135...37,800,894
Ensembl chr  X:33,963,657...33,992,115 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO
IEA 		(PMID:26287463)
GO_REF:0000107 		RGD
Ensembl		 PMID:26287463 GO_REF:0000107 NCBI chr10:98,824,916...99,102,590
Ensembl chr10:98,828,348...99,101,759 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2655190 (PMID:19766171)
GO_REF:0000107
MGI:2655190 (PMID:29677370) 		RGD
Ensembl		 PMID:19766171 PMID:29677370 GO_REF:0000107 NCBI chr 1:235,963,455...236,043,572
Ensembl chr 1:226,549,842...226,630,402 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20607706) RGD PMID:20607706 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO
IEA 		(PMID:20607706)
GO_REF:0000107 		RGD
Ensembl		 PMID:20607706 GO_REF:0000107 NCBI chr 9:29,282,703...29,312,568
Ensembl chr 9:21,786,258...21,814,520 		JBrowse link
G Tspan12 tetraspanin 12 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:19837033) 		UniProt
Ensembl
RGD		 PMID:19837033 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:51,279,562...51,355,030
Ensembl chr 4:50,313,772...50,389,246 		JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:16885194), (PMID:17234588), (PMID:25147295)
GO_REF:0000107
(PMID:12915475) 		RGD
Ensembl		 PMID:12915475 PMID:16885194 PMID:17234588 PMID:25147295 GO_REF:0000107 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:19389377) 		UniProt
RGD		 PMID:19389377 GO_REF:0000024 NCBI chr 1:64,985,161...64,993,274
Ensembl chr 1:56,312,066...56,320,179 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO MGI:6693686 (PMID:32265257) RGD PMID:32265257 NCBI chr11:44,318,836...44,418,382
Ensembl chr11:44,318,836...44,418,382 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA 		(PMID:15346351)
GO_REF:0000107 		RGD
Ensembl		 PMID:15346351 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2156191 (PMID:18985738) RGD PMID:18985738 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:167,270,353...167,400,497 		JBrowse link
G Man2a1 mannosidase, alpha, class 2A, member 1 acts_upstream_of_or_within ISO MGI:2159011|MGI:2673381 (PMID:20144606) RGD PMID:20144606 NCBI chr 9:104,252,001...104,408,349
Ensembl chr 9:104,252,001...104,408,349 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO
IEA 		(PMID:27008858)
GO_REF:0000107 		RGD
Ensembl		 PMID:27008858 GO_REF:0000107 NCBI chr 5:140,510,933...140,525,828
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:2676199 (PMID:15716406)
GO_REF:0000107 		RGD
Ensembl		 PMID:15716406 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3605481 (PMID:15728677) 		Ensembl
RGD		 PMID:15728677 GO_REF:0000107 NCBI chr11:67,825,296...67,931,999
Ensembl chr11:54,364,487...54,462,519 		JBrowse link
G Prom1 prominin 1 involved_in ISO
IEA 		(PMID:18654668)
GO_REF:0000107 		RGD
Ensembl		 PMID:18654668 GO_REF:0000107 NCBI chr14:71,202,303...71,307,008
Ensembl chr14:66,990,160...67,094,527 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3701996 (PMID:17301087) 		Ensembl
RGD		 PMID:17301087 GO_REF:0000107 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:20300562) 		Ensembl
RGD		 PMID:20300562 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Rp1 RP1, axonemal microtubule associated acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21052544) 		Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2386674 (PMID:10725384) 		Ensembl
RGD		 PMID:10725384 GO_REF:0000107 NCBI chr  X:15,238,961...15,299,004
Ensembl chr  X:12,566,645...12,747,882 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:3625176 (PMID:16651659) RGD PMID:16651659 NCBI chr 2:119,465,131...119,467,542
Ensembl chr 2:117,536,929...117,539,338 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856112 (PMID:16854970), (PMID:8630490) 		Ensembl
RGD		 PMID:8630490 PMID:16854970 GO_REF:0000107 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B involved_in ISO
IEA 		(PMID:19903896)
GO_REF:0000107 		RGD
Ensembl		 PMID:19903896 GO_REF:0000107 NCBI chr 8:128,016,589...128,056,193
Ensembl chr 8:119,138,812...119,170,458 		JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in ISO (PMID:19903896) RGD PMID:19903896 NCBI chr 7:134,117,917...134,135,306
Ensembl chr 7:132,239,729...132,256,591 		JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO
IEA 		(PMID:19903896)
GO_REF:0000107 		RGD
Ensembl		 PMID:19903896 GO_REF:0000107 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:61,190,566...61,301,809 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO
IEA 		MGI:2154690 (PMID:19005183)
GO_REF:0000107 		RGD
Ensembl		 PMID:19005183 GO_REF:0000107 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Fzd4 frizzled class receptor 4 acts_upstream_of_or_within ISO
IEA 		MGI:2387667 (PMID:23217714), (PMID:25083995), (PMID:25414188)
GO_REF:0000107 		RGD
Ensembl		 PMID:23217714 PMID:25083995 PMID:25414188 GO_REF:0000107 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO
IEA 		MGI:2386679 (PMID:21212189)
GO_REF:0000107 		RGD
Ensembl		 PMID:21212189 GO_REF:0000107 NCBI chr 6:98,357,788...98,405,068
Ensembl chr 6:92,624,390...92,669,261 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856965|MGI:3510641 (PMID:16111892)
GO_REF:0000107 		RGD
Ensembl		 PMID:16111892 GO_REF:0000107 NCBI chr19:11,609,004...12,057,174
Ensembl chr19:11,603,129...12,048,930 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within ISO
IEA 		MGI:2183279|MGI:3604604 (PMID:22272305), (PMID:25083995)
GO_REF:0000107 		RGD
Ensembl		 PMID:22272305 PMID:25083995 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Mir218-2 microRNA 218-2 acts_upstream_of_or_within ISO (PMID:20947829) RGD PMID:20947829 NCBI chr10:20,572,523...20,572,632
Ensembl chr10:20,068,451...20,068,560 		JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:40,859,769...40,859,843
Ensembl chr19:23,954,997...23,955,071 		JBrowse link
G Mir23b microRNA 23b acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr17:1,819,386...1,819,482
Ensembl chr17:1,813,667...1,813,763 		JBrowse link
G Mir24-2 microRNA 24-2 acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:40,859,455...40,859,562
Ensembl chr19:23,954,683...23,954,790 		JBrowse link
G Mir27a microRNA 27a acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr19:40,859,603...40,859,689
Ensembl chr19:23,954,831...23,954,917 		JBrowse link
G Mir27b microRNA 27b acts_upstream_of_or_within ISO (PMID:21536891) RGD PMID:21536891 NCBI chr17:1,819,147...1,819,243
Ensembl chr17:1,813,426...1,813,529 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2676199|MGI:4414794 (PMID:15716406), (PMID:18978344), (PMID:23217714), (PMID:25083995), (PMID:25414188), (PMID:28575130), (PMID:29654250), (PMID:29715368) 		Ensembl
RGD		 PMID:15716406 PMID:18978344 PMID:23217714 PMID:25083995 PMID:25414188 More... GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nrp1 neuropilin 1 acts_upstream_of_or_within ISO
IEA 		(PMID:25414188)
GO_REF:0000107 		RGD
Ensembl		 PMID:25414188 GO_REF:0000107 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (PMID:25224828) RGD PMID:25224828 NCBI chr 7:113,419,882...113,438,343
Ensembl chr 7:111,540,345...111,557,984 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA
ISO
ISS 		GO_REF:0000107
UniProtKB:P05622 (PMID:11239463)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:11239463 GO_REF:0000024 GO_REF:0000107 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,005,839...33,054,335 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in ISS
ISO 		GO_REF:0000024
UniProtKB:P26618 (PMID:11239463), (PMID:14624252) 		UniProt
RGD		 PMID:11239463 PMID:14624252 GO_REF:0000024 NCBI chr18:56,770,348...56,809,228
Ensembl chr18:54,499,964...54,538,843 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO
IEA 		(PMID:20300562)
GO_REF:0000107 		RGD
Ensembl		 PMID:20300562 GO_REF:0000107 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO
IEA 		(PMID:29715368)
GO_REF:0000107 		RGD
Ensembl		 PMID:29715368 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within ISO (PMID:31698979) RGD PMID:31698979 NCBI chr16:8,126,630...8,206,556
Ensembl chr16:8,120,336...8,200,269 		JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:3812708 (PMID:22535667)
GO_REF:0000107 		RGD
Ensembl		 PMID:22535667 GO_REF:0000107 NCBI chr10:54,149,372...54,162,128
Ensembl chr10:53,650,553...53,663,913 		JBrowse link
G Clic4 chloride intracellular channel 4 acts_upstream_of_or_within ISO
IEA 		MGI:3838012 (PMID:19197003)
GO_REF:0000107 		RGD
Ensembl		 PMID:19197003 GO_REF:0000107 NCBI chr 5:152,737,371...152,797,118
Ensembl chr 5:147,453,712...147,513,452 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in
acts_upstream_of_or_within 		ISO
IEA
IBA 		(PMID:12172548), (PMID:15024691)
GO_REF:0000107
MGI:102570|MGI:1278315|MGI:4412057 (PMID:19837032)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:12172548 PMID:15024691 PMID:19837032 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within IMP
IEA
ISO 		GO_REF:0000107
MGI:102570|MGI:108520|MGI:2183279|MGI:3774282 (PMID:11956231), (PMID:18263894), (PMID:19837032) 		Ensembl
RGD		 PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 GO_REF:0000107, RGD:40902996 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:108520|MGI:1278315|MGI:2676199 (PMID:18978344), (PMID:19837032) 		Ensembl
RGD		 PMID:18978344 PMID:19837032 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO
IEA 		(PMID:24401374)
GO_REF:0000107 		RGD
Ensembl		 PMID:24401374 GO_REF:0000107 NCBI chr19:73,256,557...73,411,705
Ensembl chr19:56,359,455...56,513,633 		JBrowse link
G Rhoj ras homolog family member J acts_upstream_of_or_within ISO
IEA 		MGI:4365246 (PMID:22535667)
GO_REF:0000107 		RGD
Ensembl		 PMID:22535667 GO_REF:0000107 NCBI chr 6:99,771,104...99,853,366
Ensembl chr 6:94,035,483...94,118,275 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (PMID:12808454) RGD PMID:12808454 NCBI chr15:13,015,854...13,095,485
Ensembl chr15:10,588,979...10,664,781 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family, member e22 acts_upstream_of_or_within ISO MGI:3707409 (PMID:17092954) RGD PMID:17092954 NCBI chr 2:100,486,400...100,489,510
Ensembl chr 2:100,486,400...100,489,510 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3056615 (PMID:16249514) 		Ensembl
RGD		 PMID:16249514 GO_REF:0000107 NCBI chr 1:210,857,223...210,872,431
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:24467707) RGD PMID:24467707 NCBI chr 5:164,527,083...164,677,037
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) RGD PMID:25654255 NCBI chr14:90,468,696...90,556,522
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Irx5 iroquois homeobox 5 acts_upstream_of_or_within ISO
IEA 		MGI:1890816 (PMID:18322081)
GO_REF:0000107 		RGD
Ensembl		 PMID:18322081 GO_REF:0000107 NCBI chr19:30,812,033...30,816,885
Ensembl chr19:14,624,225...14,642,318 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO MGI:5448232 (PMID:23172916) RGD PMID:23172916 NCBI chr19:14,330,440...14,336,403
Ensembl chr19:14,330,440...14,336,403 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3052661|MGI:3605621 (PMID:28199486) 		Ensembl
RGD		 PMID:28199486 GO_REF:0000107 NCBI chr20:49,542,465...49,564,088
Ensembl chr20:47,959,858...47,981,488 		JBrowse link
G Vsx1 visual system homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1859086|MGI:3033929|MGI:3040317 (PMID:14745032), (PMID:15043821), (PMID:18322081)
GO_REF:0000107 		RGD
Ensembl		 PMID:14745032 PMID:15043821 PMID:18322081 GO_REF:0000107 NCBI chr 3:139,514,270...139,521,869
Ensembl chr 3:139,514,270...139,521,869 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1856112 (PMID:8630490) 		Ensembl
RGD		 PMID:8630490 GO_REF:0000107 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 involved_in ISO (PMID:30146259) RGD PMID:30146259 NCBI chr 7:91,115,894...91,263,823
Ensembl chr 7:89,226,463...89,374,378 		JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain involved_in ISO
IEA 		(PMID:20818663)
GO_REF:0000107 		RGD
Ensembl		 PMID:20818663 GO_REF:0000107 NCBI chr16:84,885,597...84,996,482
Ensembl chr16:78,183,533...78,294,412 		JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:20032512) 		UniProt
Ensembl
RGD		 PMID:20032512 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:21,093,927...21,103,091
Ensembl chr 6:15,342,344...15,350,917 		JBrowse link
G Fzd4 frizzled class receptor 4 involved_in ISO
IEA 		(PMID:15035989)
GO_REF:0000107 		RGD
Ensembl		 PMID:15035989 GO_REF:0000107 NCBI chr 1:152,692,507...152,701,372
Ensembl chr 1:143,280,065...143,285,724 		JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 9:115,139,548...115,263,620
Ensembl chr 9:107,692,770...107,817,478 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA 		(PMID:27031698)
GO_REF:0000107
(PMID:15024691), (PMID:15346351) 		RGD
Ensembl		 PMID:15024691 PMID:15346351 PMID:27031698 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:2676199 (PMID:18978344), (PMID:22394677), (PMID:28575130)
GO_REF:0000107 		RGD
Ensembl		 PMID:18978344 PMID:22394677 PMID:28575130 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:3056615 (PMID:16249514)
GO_REF:0000107 		RGD
Ensembl		 PMID:16249514 GO_REF:0000107 NCBI chr 1:210,857,223...210,872,431
Ensembl chr 1:201,428,672...201,433,172 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO MGI:3608770 (PMID:21052544) RGD PMID:21052544 NCBI chr 9:39,447,534...39,494,044
Ensembl chr 9:39,448,034...39,493,183 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (PMID:23001562) RGD PMID:23001562 NCBI chr 3:41,946,694...41,974,629
Ensembl chr 3:21,542,221...21,563,294 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of
acts_upstream_of_or_within 		IEA
ISO 		GO_REF:0000107
MGI:2664293 (PMID:20203194) 		Ensembl
RGD		 PMID:20203194 GO_REF:0000107 NCBI chr 6:129,285,747...129,287,608
Ensembl chr 6:129,285,749...129,286,660 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3588845 (PMID:17065522), (PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:17065522 PMID:21052544 GO_REF:0000107 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Hcn1 hyperpolarization-activated cyclic nucleotide-gated potassium channel 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21052544)
GO_REF:0000107 		RGD
Ensembl		 PMID:21052544 GO_REF:0000107 NCBI chr 2:51,228,710...51,632,806
Ensembl chr 2:49,495,771...49,899,774 		JBrowse link
G Mir124-1 microRNA 124-1 acts_upstream_of_or_within ISO MGI:3618700|MGI:5307015|MGI:5307017 (PMID:21857657) RGD PMID:21857657 NCBI chr15:43,017,834...43,017,918
Ensembl chr15:38,842,014...38,842,098 		JBrowse link
G Mir124-2 microRNA 124-2 acts_upstream_of_or_within ISO MGI:2676807 (PMID:21857657) RGD PMID:21857657 NCBI chr 2:102,051,095...102,051,203
Ensembl chr 2:100,134,866...100,134,974 		JBrowse link
G Mir182 microRNA 182 acts_upstream_of_or_within ISO MGI:2676847|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:58,784,818...58,784,879
Ensembl chr 4:58,784,818...58,784,879 		JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:59,756,044...59,756,153
Ensembl chr 4:58,788,614...58,788,723 		JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (PMID:23341629) RGD PMID:23341629 NCBI chr 4:59,755,841...59,755,946
Ensembl chr 4:58,788,411...58,788,516 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:21052544) 		Ensembl
RGD		 PMID:21052544 GO_REF:0000107 NCBI chr 1:245,322,015...245,377,874
Ensembl chr 1:235,909,775...235,965,315 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16574740) 		UniProt
Ensembl
RGD		 PMID:16574740 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO
IEA 		(PMID:14507858)
GO_REF:0000107 		RGD
Ensembl		 PMID:14507858 GO_REF:0000107 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of IEA
ISO 		GO_REF:0000107
(PMID:20203194) 		Ensembl
RGD		 PMID:20203194 GO_REF:0000107 NCBI chr15:10,115,954...10,465,231
Ensembl chr15:7,685,180...7,882,916 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISO
ISS 		(PMID:10567740)
GO_REF:0000024 		RGD
UniProt		 PMID:10567740 GO_REF:0000024 NCBI chr 8:53,286,396...53,291,541
Ensembl chr 8:44,389,513...44,394,659 		JBrowse link
G Ush1c USH1 protein network component harmonin involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:96,695,303...96,743,671
Ensembl chr 1:96,695,307...96,743,671 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:36125046) 		Ensembl
RGD		 PMID:36125046 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2152779|MGI:95779 (PMID:19815523)
GO_REF:0000107 		RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3588845|MGI:95778 (PMID:19815523)
GO_REF:0000107 		RGD
Ensembl		 PMID:19815523 GO_REF:0000107 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO
IEA 		MGI:1933835|MGI:3052237 (PMID:16452096)
GO_REF:0000107 		RGD
Ensembl		 PMID:16452096 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
retinal pigment epithelium development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:23844226), (PMID:25991857) RGD PMID:23844226 PMID:25991857 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Cldn19 claudin 19 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:27593915), (PMID:30937396)
(PMID:30937396) 		UniProt
Ensembl
RGD		 PMID:27593915 PMID:30937396 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:138,148,234...138,155,672
Ensembl chr 5:132,863,267...132,868,227 		JBrowse link
G Cldn3 claudin 3 involved_in ISO
IEA 		(PMID:27593915)
GO_REF:0000107 		RGD
Ensembl		 PMID:27593915 GO_REF:0000107 NCBI chr12:27,345,075...27,346,547
Ensembl chr12:21,708,398...21,711,001 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1934258 (PMID:18582859) 		Ensembl
RGD		 PMID:18582859 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:76,504,315...76,510,532 		JBrowse link
G Med1 mediator complex subunit 1 involved_in ISO
IEA 		(PMID:11724781)
GO_REF:0000107 		RGD
Ensembl		 PMID:11724781 GO_REF:0000107 NCBI chr10:83,641,851...83,685,560
Ensembl chr10:83,145,568...83,189,299 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO
IEA 		(PMID:27008858)
GO_REF:0000107 		RGD
Ensembl		 PMID:27008858 GO_REF:0000107 NCBI chr 5:140,510,933...140,525,828
Ensembl chr 5:135,225,816...135,240,690 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO
IEA 		MGI:2676199 (PMID:9071226)
GO_REF:0000107 		RGD
Ensembl		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Pax2 paired box 2 involved_in ISO
ISS 		(PMID:8951055)
GO_REF:0000024 		RGD
UniProt		 PMID:8951055 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321 		JBrowse link
G Slc38a8 solute carrier family 38, member 8 acts_upstream_of_or_within ISO
IEA 		(PMID:37862028)
GO_REF:0000107 		RGD
Ensembl		 PMID:37862028 GO_REF:0000107 NCBI chr19:64,432,524...64,468,852
Ensembl chr19:47,525,301...47,554,726 		JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:4440463 (PMID:20159594) 		Ensembl
RGD		 PMID:20159594 GO_REF:0000107 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415 		JBrowse link
G Tmem135 transmembrane protein 135 acts_upstream_of_or_within ISO
IEA 		MGI:5811600 (PMID:33064130)
GO_REF:0000107 		RGD
Ensembl		 PMID:33064130 GO_REF:0000107 NCBI chr 1:152,418,929...152,692,405
Ensembl chr 1:143,006,344...143,221,171 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (PMID:20081859) RGD PMID:20081859 NCBI chr 1:17,580,859...17,711,775
Ensembl chr 1:15,762,462...15,891,041 		JBrowse link
G Alms1 ALMS1, centrosome and basal body associated protein acts_upstream_of_or_within ISO MGI:3576051 (PMID:16000322) RGD PMID:16000322 NCBI chr 4:119,683,085...119,783,471
Ensembl chr 4:118,125,607...118,226,005 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO
IEA 		MGI:3045473 (PMID:15173597)
GO_REF:0000107 		RGD
Ensembl		 PMID:15173597 GO_REF:0000107 NCBI chr 8:68,627,739...68,661,232
Ensembl chr 8:59,731,912...59,765,607 		JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO
IEA 		MGI:3054837 (PMID:17255172)
GO_REF:0000107 		RGD
Ensembl		 PMID:17255172 GO_REF:0000107 NCBI chr 3:188,266,572...188,268,786
Ensembl chr 3:167,889,009...167,891,223 		JBrowse link
G Cfh complement factor H acts_upstream_of_or_within ISO (PMID:17921253) RGD PMID:17921253 NCBI chr13:54,063,079...54,164,523
Ensembl chr13:51,511,828...51,613,838 		JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO MGI:3665263 (PMID:16877424) RGD PMID:16877424 NCBI chr12:50,075,026...50,090,259 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA 		MGI:1934018 (PMID:17712420)
GO_REF:0000107 		RGD
Ensembl		 PMID:17712420 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Nrl neural retina leucine zipper involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2152376 (PMID:11694879) 		GO_Central
Ensembl
RGD		 PMID:11694879 GO_REF:0000033 GO_REF:0000107 NCBI chr15:32,977,023...32,981,442
Ensembl chr15:29,008,104...29,009,832 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO
IEA 		MGI:3039928 (PMID:10516311)
GO_REF:0000107 		RGD
Ensembl		 PMID:10516311 GO_REF:0000107 NCBI chr17:5,560,558...5,875,899
Ensembl chr17:5,559,043...5,869,136 		JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:16574740), (PMID:19805139) 		UniProt
Ensembl
RGD		 PMID:16574740 PMID:19805139 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in ISO
IEA 		(PMID:14507858)
GO_REF:0000107 		RGD
Ensembl		 PMID:14507858 GO_REF:0000107 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363 		JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (PMID:33603070) RGD PMID:33603070 NCBI chr 5:172,113,900...172,142,026
Ensembl chr 5:166,831,663...166,850,009 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO
IEA 		(PMID:33603070)
GO_REF:0000107 		RGD
Ensembl		 PMID:33603070 GO_REF:0000107 NCBI chr 2:112,623,135...112,644,269
Ensembl chr 2:112,624,942...112,639,549 		JBrowse link
G Trpm1 transient receptor potential cation channel, subfamily M, member 1 acts_upstream_of_or_within ISO MGI:4421441 (PMID:19966281) RGD PMID:19966281 NCBI chr 1:117,718,896...117,835,434
Ensembl chr 1:117,718,896...117,834,605 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:36125046) 		Ensembl
RGD		 PMID:36125046 GO_REF:0000107 NCBI chr 7:46,751,028...46,754,132
Ensembl chr 7:46,750,993...46,754,141 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of ISO
IEA 		(PMID:15207851)
GO_REF:0000107 		RGD
Ensembl		 PMID:15207851 GO_REF:0000107 NCBI chr 1:219,312,512...219,314,535
Ensembl chr 1:209,887,854...209,889,877 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2152779|MGI:95779 (PMID:19815523) 		Ensembl
RGD		 PMID:19815523 GO_REF:0000107 NCBI chr 8:117,229,575...117,234,311
Ensembl chr 8:108,350,935...108,355,671 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:3588845|MGI:95778 (PMID:19815523) 		Ensembl
RGD		 PMID:19815523 GO_REF:0000107 NCBI chr 2:195,726,371...195,735,866
Ensembl chr 2:195,726,762...195,735,866 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:2676199 (PMID:9071226) 		Ensembl
RGD		 PMID:9071226 GO_REF:0000107 NCBI chr  X:8,379,569...8,404,019
Ensembl chr  X:5,796,487...5,820,934 		JBrowse link
G Ptn pleiotrophin IMP RGD PMID:16914133 RGD:9831439 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rorb RAR-related orphan receptor B acts_upstream_of_or_within ISO
IEA 		MGI:2158692 (PMID:25296752)
GO_REF:0000107 		RGD
Ensembl		 PMID:25296752 GO_REF:0000107 NCBI chr 1:225,790,216...225,970,973
Ensembl chr 1:216,363,629...216,544,390 		JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:98371 (PMID:19490914) 		UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:15,089,357...15,094,345
Ensembl chr10:14,584,829...14,589,818 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:98370 (PMID:19490914) 		UniProt
Ensembl
RGD		 PMID:19490914 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:97,806,485...97,811,994 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO
IEA 		(PMID:15207851)
GO_REF:0000107 		RGD
Ensembl		 PMID:15207851 GO_REF:0000107 NCBI chr10:86,311,528...86,363,513
Ensembl chr10:85,811,218...85,863,057 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (PMID:25654255) RGD PMID:25654255 NCBI chr 5:164,527,083...164,677,037
Ensembl chr 5:159,243,995...159,393,400 		JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:1934018 (PMID:26607664) 		Ensembl
RGD		 PMID:26607664 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 RGD:9831439 NCBI chr 4:66,260,764...66,342,614
Ensembl chr 4:65,293,734...65,375,456 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO
IEA 		MGI:4947230 (PMID:32960171)
GO_REF:0000107 		RGD
Ensembl		 PMID:32960171 GO_REF:0000107 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure development 6656
        retina development in camera-type eye 238
          negative regulation of retina development in camera-type eye + 0
          neural retina development + 110
          positive regulation of retina development in camera-type eye + 0
          regulation of retina development in camera-type eye + 1
          retina morphogenesis in camera-type eye + 89
          retina vasculature development in camera-type eye + 28
          retinal pigment epithelium development 11
Path 2
Term Annotations click to browse term
  biological_process 20567
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            sensory system development 508
              visual system development 501
                eye development 498
                  camera-type eye development 447
                    retina development in camera-type eye 238
                      negative regulation of retina development in camera-type eye + 0
                      neural retina development + 110
                      positive regulation of retina development in camera-type eye + 0
                      regulation of retina development in camera-type eye + 1
                      retina morphogenesis in camera-type eye + 89
                      retina vasculature development in camera-type eye + 28
                      retinal pigment epithelium development 11
paths to the root