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ONTOLOGY REPORT - ANNOTATIONS


Term:visual system development
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Accession:GO:0150063 term browser browse the term
Definition:The process whose specific outcome is the progression of the visual system over time, from its formation to the mature structure, including the eye, parts of the central nervous system (CNS) involved in processing of visual inputs, and connecting nerve pathways.
Synonyms:related_synonym: optic pathway development;   visual pathway development



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visual system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G P2ry12 purinergic receptor P2Y12 involved_in ISO UniProtKB:Q9Z0D9 (MGI:5806217|PMID:26948129) RGD PMID:26948129 MGI:5806217 NCBI chr 2:143,481,468...143,523,340
Ensembl chr 2:143,481,430...143,523,361
JBrowse link
amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn4 forkhead box N4 involved_in ISO (MGI:3054139|PMID:15363391) RGD PMID:15363391 MGI:3054139 NCBI chr12:42,336,706...42,359,932
Ensembl chr12:42,340,323...42,359,921
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:5629913 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Miat myocardial infarction associated transcript acts_upstream_of_or_within ISO (MGI:4458994|PMID:20459797) RGD PMID:20459797 MGI:4458994 NCBI chr12:44,414,620...44,429,852 JBrowse link
G Neurod1 neuronal differentiation 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:2158684|PMID:11861467)
UniProt
RGD
PMID:11861467 GO_REF:0000024 MGI:2158684 NCBI chr 3:64,360,222...64,363,526
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
G Neurod4 neuronal differentiation 4 involved_in ISO (MGI:2158684|PMID:11861467) RGD PMID:11861467 MGI:2158684 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030
JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
ISO
GO_REF:0000024
(MGI:3691257|PMID:17075007)
UniProt
RGD
PMID:17075007 GO_REF:0000024 MGI:3691257 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
GO_REF:0000024
(MGI:5546314|PMID:23652001)
UniProt
RGD
PMID:23652001 GO_REF:0000024 MGI:5546314 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
JBrowse link
camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 acts_upstream_of_or_within ISO MGI:3526871 (MGI:3525751|PMID:15572692) RGD PMID:15572692 MGI:3525751 NCBI chr 9:61,856,379...61,904,029
Ensembl chr 9:61,827,139...61,905,699
JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:1889403|PMID:10973493) RGD PMID:10973493 MGI:1889403 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1857891|MGI:2180721 (MGI:3055706|PMID:15366004), (MGI:3612223|PMID:16368932) RGD PMID:15366004 PMID:16368932 MGI:3055706 MGI:3612223 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Arhgap35 Rho GTPase activating protein 35 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2448591 (MGI:1926242|PMID:11044403)
Ensembl
RGD
PMID:11044403 GO_REF:0000107 MGI:1926242 NCBI chr 1:77,202,436...77,319,298
Ensembl chr 1:77,202,436...77,319,298
JBrowse link
G B9d1 B9 domain containing 1 acts_upstream_of_or_within ISO MGI:5301332 (MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:5300833 NCBI chr10:46,186,222...46,196,309
Ensembl chr10:46,186,691...46,196,008
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:1857137|MGI:2137520 (MGI:1095762|PMID:9268572), (MGI:3043486|PMID:14681194) RGD PMID:9268572 PMID:14681194 MGI:1095762 MGI:3043486 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:1338938 (MGI:3574003|PMID:15673568) RGD PMID:15673568 MGI:3574003 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Cacna1c calcium voltage-gated channel subunit alpha1 C involved_in ISO
IEA
(PMID:15454078)
GO_REF:0000107
RGD
Ensembl
PMID:15454078 GO_REF:0000107 NCBI chr 4:151,764,138...152,379,454
Ensembl chr 4:151,764,138...152,379,648
JBrowse link
G Cc2d2a coiled-coil and C2 domain containing 2A acts_upstream_of_or_within ISO MGI:5708063 (MGI:5696765|PMID:24947469) RGD PMID:24947469 MGI:5696765 NCBI chr14:67,349,004...67,435,883
Ensembl chr14:67,351,353...67,435,949
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO MGI:1933758|MGI:3840687 (MGI:3839493|PMID:19276117) RGD PMID:19276117 MGI:3839493 NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048
JBrowse link
G Cep290 centrosomal protein 290 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 acts_upstream_of_or_within ISO MGI:3588650 (MGI:3611161|PMID:16207732) RGD PMID:16207732 MGI:3611161 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1916503 (MGI:2682441|PMID:12546709) RGD PMID:12546709 MGI:2682441 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO MGI:88515 (MGI:2682441|PMID:12546709) RGD PMID:12546709 MGI:2682441 NCBI chr 8:51,093,441...51,099,161
Ensembl chr 8:51,093,441...51,099,157
JBrowse link
G Cryba1 crystallin, beta A1 acts_upstream_of_or_within ISO MGI:1857969 (MGI:1350675|PMID:10585769) RGD PMID:10585769 MGI:1350675 NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726
JBrowse link
G Cryba4 crystallin, beta A4 involved_in ISO (PMID:16960806) RGD PMID:16960806 NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221
JBrowse link
G Crybb2 crystallin, beta B2 acts_upstream_of_or_within IEP
ISO
MGI:2137511 (MGI:2137502|PMID:11381063) RGD PMID:11381063 PMID:8706714 MGI:2137502, RGD:1298813 NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671
JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (MGI:2156903|PMID:11773036) RGD PMID:11773036 MGI:2156903 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 IEP RGD PMID:15967433 RGD:2306661 NCBI chr 8:58,096,021...58,102,130
Ensembl chr 8:58,096,077...58,102,125
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA
(PMID:25406291)
GO_REF:0000107
RGD
Ensembl
PMID:25406291 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018
JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:5766588 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:51,499,737...51,703,976
Ensembl chr18:51,499,737...51,703,976
JBrowse link
G Fkbp8 FKBP prolyl isomerase 8 acts_upstream_of_or_within ISO MGI:3042750 (MGI:3039989|PMID:15105374) RGD PMID:15105374 MGI:3039989 NCBI chr16:18,895,608...18,902,648
Ensembl chr16:18,893,576...18,902,612
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1856705|MGI:1857869 (MGI:1340945|PMID:10395790), (MGI:1355577|PMID:10767326) RGD PMID:10395790 PMID:10767326 MGI:1340945 MGI:1355577 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (MGI:1355577|PMID:10767326) RGD PMID:10767326 MGI:1355577 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Foxe3 forkhead box E3 acts_upstream_of_or_within ISO MGI:2387330 (MGI:1932584|PMID:11309658) RGD PMID:11309658 MGI:1932584 NCBI chr 5:128,445,594...128,446,454
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Foxp2 forkhead box P2 acts_upstream_of_or_within ISO MGI:3723630 (MGI:3723373|PMID:17619227) RGD PMID:17619227 MGI:3723373 NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683
JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:3713422 NCBI chr17:4,482,014...4,485,155 JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within ISO MGI:2137525|MGI:3052418 (MGI:2156142|PMID:11782410), (MGI:3047041|PMID:15253273) RGD PMID:11782410 PMID:15253273 MGI:2156142 MGI:3047041 NCBI chr 2:184,490,840...184,492,456
Ensembl chr 2:184,490,840...184,492,456
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:98297 (MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:3807419 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Gpd2 glycerol-3-phosphate dehydrogenase 2 acts_upstream_of_or_within ISO MGI:1915913 (MGI:4947900|PMID:21296886) RGD PMID:21296886 MGI:4947900 NCBI chr 3:41,800,552...41,937,729
Ensembl chr 3:41,801,930...41,936,901
JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO MGI:4942413 (MGI:4943100|PMID:21377456) RGD PMID:21377456 MGI:4943100 NCBI chr 7:68,400,287...68,530,269
Ensembl chr 7:68,400,477...68,530,258
JBrowse link
G Hes5 hes family bHLH transcription factor 5 involved_in ISS
ISO
GO_REF:0000024
(MGI:3703278|PMID:17331197)
UniProt
RGD
PMID:17331197 GO_REF:0000024 MGI:3703278 NCBI chr 5:165,522,138...165,523,684
Ensembl chr 5:165,522,234...165,523,001
JBrowse link
G Hesx1 HESX homeobox 1 acts_upstream_of_or_within ISO MGI:3822474 (MGI:3821905|PMID:19093031) RGD PMID:19093031 MGI:3821905 NCBI chr16:2,191,852...2,193,957
Ensembl chr16:2,191,852...2,193,957
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
JBrowse link
G Hsf4 heat shock transcription factor 4 acts_upstream_of_or_within ISO MGI:3056560|MGI:3057199 (MGI:3056833|PMID:15483628), (MGI:3721138|PMID:16595169) RGD PMID:15483628 PMID:16595169 MGI:3056833 MGI:3721138 NCBI chr19:33,147,755...33,153,479
Ensembl chr19:33,147,755...33,153,479
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:3807419 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO MGI:1857713 (MGI:1336582|PMID:10196361) RGD PMID:10196361 MGI:1336582 NCBI chr 3:124,406,794...124,442,220
Ensembl chr 3:124,406,794...124,442,209
JBrowse link
G Lama1 laminin subunit alpha 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO MGI:1862040 (MGI:1197732|PMID:9238094) RGD PMID:9238094 MGI:1197732 NCBI chr 1:93,837,597...93,843,769
Ensembl chr 1:93,837,597...93,843,769
JBrowse link
G Lmx1b LIM homeobox transcription factor 1 beta acts_upstream_of_or_within ISO MGI:2158463|MGI:2386570|MGI:3714802 (MGI:1353150|PMID:10660670), (MGI:4461349|PMID:20568247) RGD PMID:10660670 PMID:20568247 MGI:1353150 MGI:4461349 NCBI chr 3:16,862,195...16,940,899
Ensembl chr 3:16,862,195...16,940,899
JBrowse link
G Mab21l1 mab-21 like 1 acts_upstream_of_or_within ISO (MGI:2652201|PMID:12642482) RGD PMID:12642482 MGI:2652201 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885
JBrowse link
G Mab21l2 mab-21 like 2 acts_upstream_of_or_within ISO MGI:3511363 (MGI:3510098|PMID:15385160) RGD PMID:15385160 MGI:3510098 NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (MGI:2674169|PMID:12941696) RGD PMID:12941696 MGI:2674169 NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463
JBrowse link
G Med1 mediator complex subunit 1 acts_upstream_of_or_within ISO MGI:2684189 (MGI:2682174|PMID:14500757) RGD PMID:14500757 MGI:2682174 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Mitf melanocyte inducing transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:88401 (MGI:3512656|PMID:15576400)
GO_REF:0000107
RGD
Ensembl
PMID:15576400 GO_REF:0000107 MGI:3512656 NCBI chr 4:130,409,020...130,621,145
Ensembl chr 4:130,409,217...130,621,145
JBrowse link
G Mterf4 mitochondrial transcription termination factor 4 acts_upstream_of_or_within ISO MGI:5288506 (MGI:5287350|PMID:21531335) RGD PMID:21531335 MGI:5287350 NCBI chr 9:93,834,162...93,838,838
Ensembl chr 9:93,834,144...93,838,864
JBrowse link
G Mtnr1a melatonin receptor 1A IEP RGD PMID:12890503 RGD:9588674 NCBI chr16:47,144,461...47,163,919
Ensembl chr16:47,144,461...47,163,919
JBrowse link
G Mtnr1b melatonin receptor 1B IEP RGD PMID:12890503 RGD:9588674 NCBI chr 8:12,638,219...12,652,737
Ensembl chr 8:12,638,219...12,652,737
JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO MGI:1857973|MGI:3055340 (MGI:3849775|PMID:19531352) RGD PMID:19531352 MGI:3849775 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177
JBrowse link
G Neurod1 neuronal differentiation 1 acts_upstream_of_or_within ISO MGI:108055 (MGI:2158684|PMID:11861467) RGD PMID:11861467 MGI:2158684 NCBI chr 3:64,360,222...64,363,526
Ensembl chr 3:64,359,395...64,363,649
JBrowse link
G Neurod4 neuronal differentiation 4 acts_upstream_of_or_within ISO MGI:1339708 (MGI:2158684|PMID:11861467) RGD PMID:11861467 MGI:2158684 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2176490|MGI:2176560 (MGI:3054148|PMID:15371513), (MGI:3582135|PMID:16000615) RGD PMID:15371513 PMID:16000615 MGI:3054148 MGI:3582135 NCBI chr20:46,050,134...46,070,569
Ensembl chr20:46,050,414...46,073,949
JBrowse link
G Pax2 paired box 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857673 (MGI:2662558|PMID:12756174)
UniProt
RGD
PMID:12756174 GO_REF:0000024 MGI:2662558 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO MGI:102764|MGI:108564|MGI:1856158|MGI:1931308|MGI:1934347|MGI:1934348 (MGI:1927276|PMID:11069887), (MGI:1928799|PMID:11062307), (MGI:2181466|PMID:12072567), (MGI:2384485|PMID:12183364), (MGI:2654287|PMID:12648492), (MGI:2662558|PMID:12756174), (MGI:3584303|PMID:16080917) RGD PMID:11062307 PMID:11069887 PMID:12072567 PMID:12183364 PMID:12648492 More... MGI:1927276 MGI:1928799 MGI:2181466 MGI:2384485 MGI:2654287 MGI:2662558 MGI:3584303 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pcnt pericentrin acts_upstream_of_or_within ISO MGI:4340776 (MGI:5696764|PMID:25220058) RGD PMID:25220058 MGI:5696764 NCBI chr20:12,190,597...12,278,723
Ensembl chr20:12,191,648...12,278,710
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:9618168) RGD PMID:9618168 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Pknox1 PBX/knotted 1 homeobox 1 acts_upstream_of_or_within ISO MGI:3530910 (MGI:3653971|PMID:16847320) RGD PMID:16847320 MGI:3653971 NCBI chr20:9,662,866...9,705,030
Ensembl chr20:9,662,899...9,703,727
JBrowse link
G Prss56 serine protease 56 involved_in
acts_upstream_of_or_within
ISO (PMID:21397065)
MGI:5444189 (MGI:5441705|PMID:21532570)
RGD PMID:21397065 PMID:21532570 MGI:5441705 NCBI chr 9:87,842,806...87,859,978
Ensembl chr 9:87,854,805...87,859,978
JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO
IEA
(PMID:20512159)
GO_REF:0000107
RGD
Ensembl
PMID:20512159 GO_REF:0000107 NCBI chr13:39,355,698...39,429,154
Ensembl chr13:39,352,247...39,429,169
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:98214 (MGI:1096258|PMID:9376317) RGD PMID:9376317 MGI:1096258 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Rax retina and anterior neural fold homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856862|MGI:2152531 (MGI:1929394|PMID:11105055), (MGI:3575215|PMID:15789424), (MGI:48767|PMID:17247120), (MGI:54439|PMID:640224), (MGI:61292|PMID:13970081)
Ensembl
RGD
PMID:640224 PMID:11105055 PMID:13970081 PMID:15789424 PMID:17247120 GO_REF:0000107 MGI:1929394 MGI:3575215 MGI:48767 MGI:54439 MGI:61292 NCBI chr18:59,463,737...59,467,431
Ensembl chr18:59,463,737...59,467,431
JBrowse link
G Rcn1 reticulocalbin 1 acts_upstream_of_or_within ISO (MGI:4355498|PMID:19474196) RGD PMID:19474196 MGI:4355498 NCBI chr 3:91,841,052...91,855,295
Ensembl chr 3:91,841,052...91,855,295
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IEP RGD PMID:9512345 RGD:633787 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Rpgrip1l Rpgrip1-like acts_upstream_of_or_within ISO MGI:3716208 (MGI:3715393|PMID:17553904), (MGI:3716248|PMID:17558409) RGD PMID:17553904 PMID:17558409 MGI:3715393 MGI:3716248 NCBI chr19:15,692,189...15,785,083
Ensembl chr19:15,692,150...15,785,083
JBrowse link
G Rxra retinoid X receptor alpha acts_upstream_of_or_within ISO MGI:97858 (MGI:1096258|PMID:9376317) RGD PMID:9376317 MGI:1096258 NCBI chr 3:10,989,832...11,076,366
Ensembl chr 3:10,989,832...11,073,712
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1934268|MGI:3052661|MGI:95729 (MGI:2385969|PMID:12195432), (MGI:2662556|PMID:12756179), (MGI:3608482|PMID:16236765), (MGI:3807419|PMID:18582859)
Ensembl
RGD
PMID:12195432 PMID:12756179 PMID:16236765 PMID:18582859 GO_REF:0000107 MGI:2385969 MGI:2662556 MGI:3608482 MGI:3807419 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:97490 (MGI:2181466|PMID:12072567) RGD PMID:12072567 MGI:2181466 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (MGI:2176418|PMID:11731796) RGD PMID:11731796 MGI:2176418 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Slc25a25 solute carrier family 25 member 25 acts_upstream_of_or_within ISO MGI:99778 (MGI:4947900|PMID:21296886) RGD PMID:21296886 MGI:4947900 NCBI chr 3:15,708,702...15,742,195
Ensembl chr 3:15,708,703...15,742,216
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (MGI:5513052|PMID:23543054) RGD PMID:23543054 MGI:5513052 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISS
ISO
GO_REF:0000024
(PMID:21901792)
UniProt
RGD
PMID:21901792 GO_REF:0000024 NCBI chr 8:58,549,743...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (MGI:3029604|PMID:14757819) RGD PMID:14757819 MGI:3029604 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:4127851|MGI:4440463 (MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:4439200 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415
JBrowse link
G Tmem231 transmembrane protein 231 acts_upstream_of_or_within ISO MGI:4284576 (MGI:5300833|PMID:22179047) RGD PMID:22179047 MGI:5300833 NCBI chr19:39,883,077...39,904,296
Ensembl chr19:39,883,077...39,904,269
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISS
ISO
GO_REF:0000024
(MGI:5285004|PMID:21856951)
UniProt
RGD
PMID:21856951 GO_REF:0000024 MGI:5285004 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO MGI:88180 (MGI:3043486|PMID:14681194) RGD PMID:14681194 MGI:3043486 NCBI chr 9:105,533,116...105,567,525
Ensembl chr 9:105,533,136...105,567,479
JBrowse link
G Vax1 ventral anterior homeobox 1 acts_upstream_of_or_within ISO MGI:1346018 (MGI:3578573|PMID:15905411) RGD PMID:15905411 MGI:3578573 NCBI chr 1:258,324,571...258,342,396
Ensembl chr 1:258,326,276...258,330,192
JBrowse link
G Vax2 ventral anterior homeobox 2 acts_upstream_of_or_within ISO MGI:1277163 (MGI:3578573|PMID:15905411) RGD PMID:15905411 MGI:3578573 NCBI chr 4:116,195,576...116,219,597
Ensembl chr 4:116,195,528...116,219,594
JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO MGI:104554 (MGI:3512656|PMID:15576400) RGD PMID:15576400 MGI:3512656 NCBI chr 6:104,214,842...104,240,264
Ensembl chr 6:104,217,230...104,240,018
JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:5558098|MGI:5558100 (MGI:5544506|PMID:24302887)
Ensembl
RGD
PMID:24302887 GO_REF:0000107 MGI:5544506 NCBI chr14:95,645,955...95,977,120
Ensembl chr14:95,646,038...95,977,113
JBrowse link
G Wt1 WT1 transcription factor involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:2183642 (MGI:3574744|PMID:15716344)
MGI:1857268 (MGI:2176638|PMID:11889045)
UniProt
RGD
PMID:11889045 PMID:15716344 GO_REF:0000024 MGI:2176638 MGI:3574744 NCBI chr 3:91,566,540...91,613,653
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqp1 aquaporin 1 acts_upstream_of_or_within ISO MGI:1857807 (MGI:2180433|PMID:11891232) RGD PMID:11891232 MGI:2180433 NCBI chr 4:84,482,512...84,494,690
Ensembl chr 4:84,482,512...84,494,690
JBrowse link
G Aqp5 aquaporin 5 acts_upstream_of_or_within ISO MGI:2150059 (MGI:2180433|PMID:11891232) RGD PMID:11891232 MGI:2180433 NCBI chr 7:130,722,675...130,726,207
Ensembl chr 7:130,721,748...130,726,209
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:88180 (MGI:1095762|PMID:9268572) RGD PMID:9268572 MGI:1095762 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654|MGI:2136986 (MGI:3610441|PMID:16154126), (MGI:3701027|PMID:16854970) RGD PMID:16154126 PMID:16854970 MGI:3610441 MGI:3701027 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Col8a1 collagen type VIII alpha 1 chain acts_upstream_of_or_within ISO MGI:88464 (MGI:3587134|PMID:16051690) RGD PMID:16051690 MGI:3587134 NCBI chr11:42,776,851...42,906,432
Ensembl chr11:42,777,628...42,906,424
JBrowse link
G Col8a2 collagen type VIII alpha 2 chain acts_upstream_of_or_within ISO MGI:88463 (MGI:3587134|PMID:16051690) RGD PMID:16051690 MGI:3587134 NCBI chr 5:138,586,201...138,613,627
Ensembl chr 5:138,585,999...138,612,850
JBrowse link
G Ephb1 Eph receptor B1 acts_upstream_of_or_within ISO MGI:2677305 (MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:2675767 NCBI chr 8:102,507,549...102,944,839
Ensembl chr 8:102,507,549...102,944,839
JBrowse link
G Ephb2 Eph receptor B2 acts_upstream_of_or_within ISO MGI:2149765 (MGI:2675767|PMID:12971893) RGD PMID:12971893 MGI:2675767 NCBI chr 5:148,889,574...149,077,027
Ensembl chr 5:148,897,246...149,077,059
JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:5766588 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO MGI:2449673 (MGI:3581514|PMID:15976303) RGD PMID:15976303 MGI:3581514 NCBI chr 7:1,311,732...1,325,211
Ensembl chr 7:1,311,732...1,320,725
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1856276 (MGI:52587|PMID:8387379) RGD PMID:8387379 MGI:52587 NCBI chr17:49,438,567...49,709,712
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Grcc10 gene rich cluster, C10 gene involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) RGD PMID:23453665 PMID:23633300 PMID:24798461 NCBI chr 4:157,551,276...157,552,924 JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO MGI:103223 (MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:5429122 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) RGD PMID:19000668 MGI:3827087 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1861626 (MGI:3589043|PMID:16104381)
GO_REF:0000107
RGD
Ensembl
PMID:16104381 GO_REF:0000107 MGI:3589043 NCBI chr 5:158,304,285...158,335,502
Ensembl chr 5:158,304,287...158,335,342
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:3605480 (MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:3604842 NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787
JBrowse link
G Nf1 neurofibromin 1 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
GO_REF:0000024
MGI:1857444 (MGI:66069|PMID:7926784)
GO_REF:0000107
HGNC-UCL
RGD
Ensembl
PMID:7926784 GO_REF:0000024 GO_REF:0000107 MGI:66069 NCBI chr10:64,306,027...64,539,112
Ensembl chr10:64,306,301...64,536,658
JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO MGI:99150 (MGI:3628673|PMID:16624538) RGD PMID:16624538 MGI:3628673 NCBI chr20:4,830,120...4,833,623
Ensembl chr20:4,830,053...4,833,620
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:3693412 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) RGD PMID:22766609 NCBI chr16:41,251,909...43,978,594
Ensembl chr16:41,252,182...43,978,594
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (MGI:3607459|PMID:16251428) RGD PMID:16251428 MGI:3607459 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:106918|MGI:2136645 (MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:5429122 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO MGI:1101770 (MGI:3628673|PMID:16624538) RGD PMID:16624538 MGI:3628673 NCBI chr 6:127,706,739...127,731,907
Ensembl chr 6:127,707,596...127,732,747
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dscam DS cell adhesion molecule involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
JBrowse link
G Prom1 prominin 1 involved_in IBA
ISO
PMID:21873635
(MGI:3838023|PMID:19228982)
(PMID:18654668)
RGD PMID:18654668 PMID:19228982 PMID:21873635 MGI:3838023, RGD:13792537 NCBI chr14:66,989,545...67,094,534
Ensembl chr14:66,990,160...67,094,527
JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:4437581 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) RGD PMID:26287463 MGI:5693671 NCBI chr10:98,824,923...99,102,590
Ensembl chr10:98,828,348...99,101,759
JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO GO:0060219 (MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:2680888 NCBI chr15:10,585,307...10,664,781
Ensembl chr15:10,588,979...10,664,781
JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO MGI:5140723 (MGI:5014119|PMID:21646512) RGD PMID:21646512 MGI:5014119 NCBI chr 6:118,198,186...118,252,422
Ensembl chr 6:118,198,201...118,252,418
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:3807419 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO
PMID:17064680
(MGI:3703484|PMID:17064680)
RGD PMID:17064680 PMID:17064680 MGI:3703484, RGD:10047226 NCBI chr 5:128,445,594...128,446,454
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Jag1 jagged canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3692444 (MGI:5492288|PMID:23676271)
Ensembl
RGD
PMID:23676271 GO_REF:0000107 MGI:5492288 NCBI chr 3:124,406,794...124,442,220
Ensembl chr 3:124,406,794...124,442,209
JBrowse link
G Notch2 notch receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3617328 (MGI:5492288|PMID:23676271)
Ensembl
RGD
PMID:23676271 GO_REF:0000107 MGI:5492288 NCBI chr 2:185,610,594...185,744,088
Ensembl chr 2:185,610,589...185,744,088
JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
(MGI:5285004|PMID:21856951)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:21856951 GO_REF:0000024 GO_REF:0000107 MGI:5285004 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:152,656,693...152,672,588
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:5429122 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:3719969 NCBI chr 5:144,549,350...144,621,259
Ensembl chr 5:144,549,363...144,620,865
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3797299|PMID:18423449)
UniProt
RGD
PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO
PMID:17064680
(MGI:3703484|PMID:17064680)
RGD PMID:17064680 PMID:17064680 MGI:3703484, RGD:10047226 NCBI chr 5:128,445,594...128,446,454
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Kera keratocan acts_upstream_of_or_within ISO UniProtKB:O60938 (MGI:1855733|PMID:10802664) RGD PMID:10802664 MGI:1855733 NCBI chr 7:32,397,382...32,404,837
Ensembl chr 7:32,397,382...32,404,837
JBrowse link
G Krt12 keratin 12 involved_in
acts_upstream_of_or_within
ISO
ISS
IEA
(PMID:26758872)
MGI:3051854 (MGI:85415|PMID:8977471)
(MGI:5752087|PMID:26758872)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:8977471 PMID:26758872 GO_REF:0000024 GO_REF:0000107 MGI:5752087 MGI:85415 NCBI chr10:84,370,803...84,378,075
Ensembl chr10:84,370,883...84,378,045
JBrowse link
G Limk2 LIM domain kinase 2 acts_upstream_of_or_within ISO MGI:3612836 (MGI:5646594|PMID:26234751) RGD PMID:26234751 MGI:5646594 NCBI chr14:78,208,182...78,286,106
Ensembl chr14:78,218,063...78,286,007
JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA
(PMID:7550230)
GO_REF:0000107
RGD
Ensembl
PMID:7550230 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3797299|PMID:18423449)
UniProt
RGD
PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2183192 (MGI:3610667|PMID:16186342) RGD PMID:16186342 MGI:3610667 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:3044412 (MGI:4949824|PMID:20574024) RGD PMID:20574024 MGI:4949824 NCBI chr 9:92,374,740...92,419,222
Ensembl chr 9:92,374,574...92,419,222
JBrowse link
embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family, member A2 acts_upstream_of_or_within ISO MGI:1861722 (MGI:3700411|PMID:17184764) RGD PMID:17184764 MGI:3700411 NCBI chr 8:71,877,850...71,957,107
Ensembl chr 8:71,877,850...71,957,107
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within
ISO (MGI:3042765|PMID:14623956)
MGI:107928 (MGI:3700411|PMID:17184764)
RGD PMID:14623956 PMID:17184764 MGI:3042765 MGI:3700411 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
G Cdk20 cyclin-dependent kinase 20 acts_upstream_of_or_within ISO MGI:6113512 (MGI:5912686|PMID:28817564) RGD PMID:28817564 MGI:5912686 NCBI chr17:701,122...707,869
Ensembl chr17:701,124...707,826
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (MGI:3588480|PMID:15958512) RGD PMID:15958512 MGI:3588480 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO MGI:3574771|MGI:3583769 (MGI:3821812|PMID:18791178) RGD PMID:18791178 MGI:3821812 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO MGI:4458412 (MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:5505384 NCBI chr10:14,032,665...14,121,682
Ensembl chr10:14,032,648...14,120,433
JBrowse link
G Nes nestin involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 2:173,437,867...173,447,777
Ensembl chr 2:173,438,734...173,447,777
JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846|MGI:1857880 (MGI:1344731|PMID:10498698), (MGI:1347482|PMID:10572050) RGD PMID:10498698 PMID:10572050 MGI:1344731 MGI:1347482 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Ppp1r13l protein phosphatase 1, regulatory subunit 13 like acts_upstream_of_or_within ISO MGI:3575541 (MGI:3530389|PMID:15661756) RGD PMID:15661756 MGI:3530389 NCBI chr 1:79,010,997...79,030,714
Ensembl chr 1:79,011,745...79,030,712
JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within ISO MGI:97858 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr10:83,883,490...83,928,932
Ensembl chr10:83,893,384...83,928,142
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97856 (MGI:69060|PMID:7607067) RGD PMID:7607067 MGI:69060 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:3709664 NCBI chr 5:3,186,671...3,215,572
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
G Traf3ip1 TRAF3 interacting protein 1 acts_upstream_of_or_within ISO MGI:4129326 (MGI:5298450|PMID:21945076) RGD PMID:21945076 MGI:5298450 NCBI chr 9:92,073,622...92,110,427
Ensembl chr 9:92,073,640...92,108,977
JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,590,478...161,632,514
Ensembl chr 4:161,590,479...161,632,149
JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:43,042,474...43,106,337
Ensembl chr14:43,042,478...43,106,288
JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:58,549,743...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07063281.1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:1857654 (MGI:1332362|PMID:10049573) RGD PMID:10049573 MGI:1332362 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:97490 (MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:3807101 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3777403 (MGI:3775669|PMID:18056999) RGD PMID:18056999 MGI:3775669 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) RGD PMID:22022403 MGI:5297296 NCBI chr17:32,835,730...32,842,555 JBrowse link
G Fzd5 frizzled class receptor 5 involved_in IEA
ISO
GO_REF:0000107
(MGI:3826935|PMID:18832390)
Ensembl
RGD
PMID:18832390 GO_REF:0000107 MGI:3826935 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4818711|PMID:20579985)
Ensembl
RGD
PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO MGI:3578529 (MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:6094959 NCBI chr 4:148,905,031...148,975,458
Ensembl chr 4:148,905,046...148,975,458
JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO MGI:2682066 (MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:6094959 NCBI chr 6:25,081,933...25,121,271 JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:3807419 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:33,566,530...33,701,366
Ensembl chr12:33,574,657...33,701,355
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2156191|MGI:4415718 (MGI:3823171|PMID:18985738), (MGI:4413396|PMID:19653321)
RGD PMID:18985738 PMID:19653321 PMID:21873635 MGI:3823171 MGI:4413396, RGD:13792537 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1306784 (MGI:3807101|PMID:18653562)
Ensembl
RGD
PMID:18653562 GO_REF:0000107 MGI:3807101 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:133,541,302...133,571,961
Ensembl chr 7:133,541,491...133,571,961
JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:57,811,855...57,857,150
Ensembl chr 3:57,812,075...57,860,342
JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:3487212 NCBI chr10:70,679,670...70,688,868
Ensembl chr10:70,679,518...70,688,529
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (MGI:1313057|PMID:9811866) RGD PMID:9811866 MGI:1313057 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:3617102 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857515 (MGI:3790562|PMID:18436818)
Ensembl
RGD
PMID:18436818 GO_REF:0000107 MGI:3790562 NCBI chr17:51,948,948...52,116,018
Ensembl chr17:51,948,948...52,115,214
JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 acts_upstream_of_or_within ISO MGI:1861722 (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) RGD PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 acts_upstream_of_or_within ISO MGI:1353450|MGI:3043947 (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) RGD PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA
(PMID:25406291)
GO_REF:0000107
RGD
Ensembl
PMID:25406291 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
JBrowse link
G Fbn2 fibrillin 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:51,499,737...51,703,976
Ensembl chr18:51,499,737...51,703,976
JBrowse link
G Foxl2 forkhead box L2 acts_upstream_of_or_within ISO MGI:3044226 (MGI:3043431|PMID:15056605) RGD PMID:15056605 MGI:3043431 NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427
JBrowse link
G Mfap2 microfibril associated protein 2 involved_in IBA
ISO
PMID:21873635
(PMID:25406291)
RGD PMID:25406291 PMID:21873635 RGD:13792537 NCBI chr 5:153,312,068...153,320,266
Ensembl chr 5:153,314,711...153,320,259
JBrowse link
G Mfap5 microfibril associated protein 5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,727,925...155,750,458
Ensembl chr 4:155,727,925...155,750,458
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:3608158 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97857 (MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:3608158 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Vax2 ventral anterior homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2159246 (MGI:1349226|PMID:10595508), (MGI:2157790|PMID:11830579)
Ensembl
RGD
PMID:10595508 PMID:11830579 GO_REF:0000107 MGI:1349226 MGI:2157790 NCBI chr 4:116,195,576...116,219,597
Ensembl chr 4:116,195,528...116,219,594
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2653120 (MGI:4422144|PMID:19754878)
Ensembl
RGD
PMID:19754878 GO_REF:0000107 MGI:4422144 NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4818711|PMID:20579985)
Ensembl
RGD
PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3772525|PMID:18094249)
UniProt
RGD
PMID:18094249 GO_REF:0000024 MGI:3772525 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lrp6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:4415718 (MGI:4413396|PMID:19653321)
RGD PMID:19653321 PMID:21873635 MGI:4413396, RGD:13792537 NCBI chr 4:167,266,581...167,400,155
Ensembl chr 4:167,270,353...167,400,497
JBrowse link
G Prox1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:12692551) RGD PMID:12692551 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (MGI:1344892|PMID:10469643) RGD PMID:10469643 MGI:1344892 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:5766588 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
JBrowse link
extraocular skeletal muscle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cacna1s calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within ISO MGI:1856326 (MGI:3613415|PMID:14618389) RGD PMID:14618389 MGI:3613415 NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318
JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:12630957) RGD PMID:12630957 NCBI chr 8:99,512,971...99,514,500
Ensembl chr 8:99,513,303...99,514,427
JBrowse link
G Myh15 myosin, heavy chain 15 IEP RGD PMID:19948655 RGD:2317122 NCBI chr11:51,621,924...51,763,037
Ensembl chr11:51,622,413...51,762,971
JBrowse link
G Myom1 myomesin 1 IEP RGD PMID:12878677 RGD:633368 NCBI chr 9:110,916,156...111,039,344
Ensembl chr 9:110,915,943...111,039,344
JBrowse link
G Myom2 myomesin 2 IEP RGD PMID:12878677 RGD:633368 NCBI chr16:74,520,148...74,592,658
Ensembl chr16:74,520,157...74,592,772
JBrowse link
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857844|MGI:1857846 (MGI:3624183|PMID:16638982), (MGI:4881620|PMID:21035439) RGD PMID:16638982 PMID:21035439 MGI:3624183 MGI:4881620 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb5 ATP binding cassette subfamily B member 5 involved_in ISO (MGI:5585659|PMID:25030174) RGD PMID:25030174 MGI:5585659 NCBI chr 6:139,836,528...139,932,830
Ensembl chr 6:139,835,949...139,932,830
JBrowse link
G Adamts18 ADAM metallopeptidase with thrombospondin type 1 motif, 18 involved_in ISO (PMID:23818446) RGD PMID:23818446 NCBI chr19:41,686,951...41,840,035
Ensembl chr19:41,688,617...41,839,781
JBrowse link
G Atf6 activating transcription factor 6 involved_in ISO (PMID:26029869) RGD PMID:26029869 NCBI chr13:82,927,579...83,106,381
Ensembl chr13:82,930,034...83,107,177
JBrowse link
G Bbs7 Bardet-Biedl syndrome 7 acts_upstream_of_or_within ISO MGI:98715 (MGI:5314314|PMID:22228099) RGD PMID:22228099 MGI:5314314 NCBI chr 2:119,434,760...119,474,665
Ensembl chr 2:119,434,760...119,474,396
JBrowse link
G Bloc1s3 biogenesis of lysosomal organelles complex-1, subunit 3 involved_in ISO (PMID:16385460) RGD PMID:16385460 NCBI chr 1:79,155,914...79,158,326
Ensembl chr 1:79,155,693...79,158,505
JBrowse link
G Bmp4 bone morphogenetic protein 4 NOT|involved_in ISO UniProtKB:P23359 (MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:3610441 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp6 bone morphogenetic protein 6 involved_in ISO UniProtKB:P23359 (MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:3610441 NCBI chr17:26,318,121...26,469,034
Ensembl chr17:26,318,569...26,470,365
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO (MGI:3610441|PMID:16154126) RGD PMID:16154126 MGI:3610441 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO (MGI:2181740|PMID:12117821) RGD PMID:12117821 MGI:2181740 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Chrdl1 chordin-like 1 involved_in ISO
ISS
IEA
(PMID:22284829)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:22284829 GO_REF:0000024 GO_REF:0000107 NCBI chr  X:106,889,125...106,992,937
Ensembl chr  X:106,889,125...106,992,921
JBrowse link
G Cryga crystallin, gamma A acts_upstream_of_or_within ISO MGI:1857595 (MGI:3042503|PMID:15037589) RGD PMID:15037589 MGI:3042503 NCBI chr 9:66,482,176...66,512,873
Ensembl chr 9:66,482,176...66,509,896
JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:1857597 (MGI:3042503|PMID:15037589) RGD PMID:15037589 MGI:3042503 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520
JBrowse link
G Crygc crystallin, gamma C acts_upstream_of_or_within ISO MGI:2176919 (MGI:3042503|PMID:15037589) RGD PMID:15037589 MGI:3042503 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626
JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within ISO MGI:2387106 (MGI:3042503|PMID:15037589) RGD PMID:15037589 MGI:3042503 NCBI chr 9:66,442,054...66,443,668
Ensembl chr 9:66,442,054...66,444,067
JBrowse link
G Cst3 cystatin C IEP RGD PMID:11431459 RGD:2306512 NCBI chr 3:136,336,923...136,340,796
Ensembl chr 3:136,336,920...136,340,822
JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in ISO (MGI:5291533|PMID:21858205) RGD PMID:21858205 MGI:5291533 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within ISO MGI:1856705|MGI:1857869 (MGI:1261705|PMID:9635428), (MGI:1335260|PMID:10072431)
(PMID:9792859)
RGD PMID:9635428 PMID:9792859 PMID:10072431 MGI:1261705 MGI:1335260 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxe3 forkhead box E3 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1856851 (MGI:1352262|PMID:10652278)
(PMID:27218149)
UniProt
RGD
PMID:10652278 PMID:27218149 GO_REF:0000024 MGI:1352262 NCBI chr 5:128,445,594...128,446,454
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Frem2 FRAS1 related extracellular matrix 2 involved_in
acts_upstream_of_or_within
ISO (PMID:29688405), (PMID:30802441)
(MGI:6368066|PMID:30802441)
MGI:3794302 (MGI:5646594|PMID:26234751)
RGD PMID:26234751 PMID:29688405 PMID:30802441 MGI:5646594 MGI:6368066 NCBI chr 2:137,602,784...137,740,785
Ensembl chr 2:137,602,784...137,740,785
JBrowse link
G Gdf3 growth differentiation factor 3 involved_in ISO (PMID:19864492) RGD PMID:19864492 NCBI chr 4:155,831,572...155,835,953
Ensembl chr 4:155,830,909...155,835,937
JBrowse link
G Hmgb1 high mobility group box 1 acts_upstream_of_or_within ISO MGI:3530901 (MGI:1339514|PMID:10391216) RGD PMID:10391216 MGI:1339514 NCBI chr12:5,973,062...5,978,565 JBrowse link
G Hsf4 heat shock transcription factor 4 acts_upstream_of_or_within ISO MGI:3056560 (MGI:3056236|PMID:15343150) RGD PMID:15343150 MGI:3056236 NCBI chr19:33,147,755...33,153,479
Ensembl chr19:33,147,755...33,153,479
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1918742 (MGI:5314314|PMID:22228099) RGD PMID:22228099 MGI:5314314 NCBI chr15:31,573,325...31,666,068
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Mab21l1 mab-21 like 1 involved_in ISO (PMID:27103078), (PMID:30487245) RGD PMID:27103078 PMID:30487245 NCBI chr 2:139,943,496...139,945,885
Ensembl chr 2:139,943,496...139,945,885
JBrowse link
G Mab21l2 mab-21 like 2 involved_in ISO (PMID:24906020), (PMID:25719200) RGD PMID:24906020 PMID:25719200 NCBI chr 2:171,946,573...171,949,655
Ensembl chr 2:171,946,573...171,949,655
JBrowse link
G Meis1 Meis homeobox 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265
JBrowse link
G Meis2 Meis homeobox 2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:97490 (MGI:2384485|PMID:12183364)
RGD PMID:12183364 PMID:21873635 MGI:2384485, RGD:13792537 NCBI chr 3:102,742,905...102,944,833
Ensembl chr 3:102,742,900...102,949,696
JBrowse link
G Meis3 Meis homeobox 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:76,861,267...76,872,691
Ensembl chr 1:76,861,924...76,872,691
JBrowse link
G Mug2 murinoglobulin 2 involved_in ISO (PMID:27839872) RGD PMID:27839872 NCBI chr 4:155,164,061...155,236,765
Ensembl chr 4:155,164,011...155,236,475
JBrowse link
G Pbx1 PBX homeobox 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:80,278,766...80,588,563
Ensembl chr13:80,278,770...80,588,594
JBrowse link
G Pbx2 PBX homeobox 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,151,500...4,156,425
Ensembl chr20:4,151,500...4,156,425
JBrowse link
G Pbx3 PBX homeobox 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:17,488,691...17,682,412
Ensembl chr 3:17,488,693...17,682,791
JBrowse link
G Pbx4 PBX homeobox 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr16:19,555,089...19,590,054
Ensembl chr16:19,555,090...19,590,014
JBrowse link
G Rab18 RAB18, member RAS oncogene family involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr17:54,944,099...54,976,093
Ensembl chr17:54,943,955...54,976,043
JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (PMID:10232633)
(MGI:3604178|PMID:15994349)
RGD PMID:10232633 PMID:15994349 MGI:3604178 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Sall2 spalt-like transcription factor 2 involved_in ISO (PMID:24412933) RGD PMID:24412933 NCBI chr15:25,021,345...25,038,918
Ensembl chr15:25,021,345...25,038,918
JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:20137777)
(MGI:4439252|PMID:20137777)
RGD PMID:20137777 MGI:4439252 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:16,918,679...17,005,170
JBrowse link
G Sipa1l3 signal-induced proliferation-associated 1 like 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:5697095|PMID:26231217)
UniProt
RGD
PMID:26231217 GO_REF:0000024 MGI:5697095 NCBI chr 1:84,618,714...84,825,956
Ensembl chr 1:84,618,719...84,703,802
JBrowse link
G Six3 SIX homeobox 3 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:2182264|PMID:12050133)
(PMID:18791198)
RGD PMID:12050133 PMID:18791198 PMID:21873635 MGI:2182264, RGD:13792537 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Six6 SIX homeobox 6 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:91,634,568...91,639,548
Ensembl chr 6:91,634,568...91,639,548
JBrowse link
G Slc39a5 solute carrier family 39 member 5 involved_in ISO (PMID:24891338) RGD PMID:24891338 NCBI chr 7:822,873...830,865
Ensembl chr 7:824,818...830,242
JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in ISS
ISO
GO_REF:0000024
(MGI:5775676|PMID:27018474)
UniProt
RGD
PMID:27018474 GO_REF:0000024 MGI:5775676 NCBI chr 1:79,988,540...80,011,262
Ensembl chr 1:79,988,612...80,011,254
JBrowse link
G Smoc1 SPARC related modular calcium binding 1 involved_in ISO (PMID:21194678)
(MGI:4939981|PMID:21194678)
RGD PMID:21194678 MGI:4939981 NCBI chr 6:100,701,330...100,897,441
Ensembl chr 6:100,701,346...100,862,699
JBrowse link
G Sox2 SRY-box transcription factor 2 involved_in ISO (PMID:18285410) RGD PMID:18285410 NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:15944186)
UniProt
RGD
PMID:15944186 GO_REF:0000024 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Zdhhc16 zinc finger DHHC-type palmitoyltransferase 16 involved_in ISO (MGI:5706675|PMID:26644582) RGD PMID:26644582 MGI:5706675 NCBI chr 1:240,745,606...240,757,009
Ensembl chr 1:240,745,641...240,757,009
JBrowse link
eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col5a1 collagen type V alpha 1 chain involved_in IEA
ISO
GO_REF:0000107
(PMID:16431952)
Ensembl
RGD
PMID:16431952 GO_REF:0000107 NCBI chr 3:11,208,429...11,356,715
Ensembl chr 3:11,208,512...11,354,588
JBrowse link
G Col5a2 collagen type V alpha 2 chain involved_in ISO (PMID:16431952) RGD PMID:16431952 NCBI chr 9:47,448,736...47,598,396
Ensembl chr 9:47,448,736...47,598,154
JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397 (MGI:2138055|PMID:11456441) RGD PMID:11456441 MGI:2138055 NCBI chr17:4,482,014...4,485,155 JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in ISO (PMID:8291537) RGD PMID:8291537 NCBI chr 2:57,399,443...57,586,770
Ensembl chr 2:57,399,445...57,565,899
JBrowse link
G Stau2 staufen double-stranded RNA binding protein 2 IMP RGD PMID:22940085 RGD:10043154 NCBI chr 5:2,840,801...3,084,451 JBrowse link
eye photoreceptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) RGD PMID:20081859 MGI:4437526 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO MGI:2676366 (MGI:2675211|PMID:12915475), (MGI:4849309|PMID:21052544) RGD PMID:12915475 PMID:21052544 MGI:2675211 MGI:4849309 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Dzank1 double zinc ribbon and ankyrin repeat domains 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:131,855,890...131,908,217
Ensembl chr 3:131,852,552...131,908,156
JBrowse link
G Fscn2 fascin actin-bundling protein 2, retinal acts_upstream_of_or_within ISO MGI:3612338 (MGI:3610644|PMID:16043865) RGD PMID:16043865 MGI:3610644 NCBI chr10:105,634,783...105,641,322
Ensembl chr10:105,634,783...105,641,322
JBrowse link
G Gabrr2 gamma-aminobutyric acid type A receptor subunit rho 2 NOT|acts_upstream_of_or_within ISO MGI:2446461 (MGI:2179933|PMID:12019334) RGD PMID:12019334 MGI:2179933 NCBI chr 5:47,445,280...47,489,929
Ensembl chr 5:47,452,150...47,489,809
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO MGI:2152779 (MGI:3609280|PMID:16249514) RGD PMID:16249514 MGI:3609280 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gngt1 G protein subunit gamma transducin 1 acts_upstream_of_or_within ISO MGI:3783323 (MGI:3778702|PMID:18367617) RGD PMID:18367617 MGI:3778702 NCBI chr 4:32,006,267...32,009,252
Ensembl chr 4:32,006,267...32,009,252
JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 8:60,365,581...60,373,383
Ensembl chr 8:60,366,124...60,373,163
JBrowse link
G Olfm3 olfactomedin 3 IDA RGD PMID:12019210 RGD:633402 NCBI chr 2:202,729,610...202,952,120
Ensembl chr 2:202,729,936...202,952,112
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856158 (MGI:2654287|PMID:12648492)
Ensembl
RGD
PMID:12648492 GO_REF:0000107 MGI:2654287 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (MGI:5607451|PMID:25224828) RGD PMID:25224828 MGI:5607451 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO MGI:3605621|MGI:3608904|MGI:4881674 (MGI:4454584|PMID:20463215) RGD PMID:20463215 MGI:4454584 NCBI chr20:47,959,858...47,981,488
Ensembl chr20:47,959,858...47,981,488
JBrowse link
G Prkci protein kinase C, iota acts_upstream_of_or_within ISO MGI:3526850|MGI:3608904 (MGI:3607414|PMID:16267237) RGD PMID:16267237 MGI:3607414 NCBI chr 2:112,321,919...112,382,305
Ensembl chr 2:112,321,929...112,382,352
JBrowse link
G Psen1 presenilin 1 NAS RGD PMID:12736250 RGD:724403 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Rbp3 retinol binding protein 3 NAS RGD PMID:7916695 RGD:633871 NCBI chr16:9,267,538...9,276,006
Ensembl chr16:9,267,538...9,276,006
JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO MGI:5467544 (MGI:5462166|PMID:22605914) RGD PMID:22605914 MGI:5462166 NCBI chr 1:69,373,014...69,401,454
Ensembl chr 1:69,373,113...69,400,908
JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
GO_REF:0000024
(MGI:3652638|PMID:16574740)
UniProt
RGD
PMID:16574740 GO_REF:0000024 MGI:3652638 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO MGI:2386674 (MGI:2654998|PMID:12651948) RGD PMID:12651948 MGI:2654998 NCBI chr  X:12,566,447...12,628,171
Ensembl chr  X:12,566,645...12,747,882
JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO MGI:2655714 (MGI:2654998|PMID:12651948) RGD PMID:12651948 MGI:2654998 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:3617102 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
JBrowse link
G Tulp1 TUB like protein 1 involved_in ISO (MGI:4397555|PMID:19218615) RGD PMID:19218615 MGI:4397555 NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073
JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048|MGI:2387296 (MGI:3607459|PMID:16251428) RGD PMID:16251428 MGI:3607459 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
JBrowse link
G Stat3 signal transducer and activator of transcription 3 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:3045481|PMID:15207851)
UniProt
RGD
PMID:15207851 GO_REF:0000024 MGI:3045481 NCBI chr10:85,811,206...85,863,057
Ensembl chr10:85,811,218...85,863,057
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO MGI:2178753 (MGI:2680889|PMID:14625556) RGD PMID:14625556 MGI:2680889 NCBI chr15:21,942,233...21,953,034
Ensembl chr15:21,943,191...21,953,416
JBrowse link
eyelid development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO MGI:98354 (MGI:85697|PMID:9030684) RGD PMID:9030684 MGI:85697 NCBI chr14:91,176,931...91,349,722
Ensembl chr14:91,177,067...91,344,382
JBrowse link
G Grhl3 grainyhead-like transcription factor 3 acts_upstream_of_or_within ISO MGI:1856837 (MGI:4947318|PMID:21262862) RGD PMID:21262862 MGI:4947318 NCBI chr 5:147,774,160...147,806,338
Ensembl chr 5:147,774,160...147,806,160
JBrowse link
G Hdac1 histone deacetylase 1 involved_in ISO UniProtKB:P70288 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr 5:141,853,992...141,881,057
Ensembl chr 5:141,853,989...141,881,111
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO UniProtKB:O09106 (MGI:4889029|PMID:21093383) RGD PMID:21093383 MGI:4889029 NCBI chr20:40,548,250...40,571,609
Ensembl chr20:40,548,250...40,571,609
JBrowse link
G Inhba inhibin subunit beta A involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q04999 (MGI:2682175|PMID:14551263)
UniProt
RGD
PMID:14551263 GO_REF:0000024 MGI:2682175 NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982
JBrowse link
G Jun Jun proto-oncogene, AP-1 transcription factor subunit acts_upstream_of_or_within ISO MGI:2673694 (MGI:5608927|PMID:25224220) RGD PMID:25224220 MGI:5608927 NCBI chr 5:109,894,175...109,897,268
Ensembl chr 5:109,893,145...109,897,656
JBrowse link
G Kmt2c lysine methyltransferase 2C acts_upstream_of_or_within ISO MGI:3693319 (MGI:3692812|PMID:17021013) RGD PMID:17021013 MGI:3692812 NCBI chr 4:9,620,638...9,834,787
Ensembl chr 4:9,609,627...9,833,539
JBrowse link
G Map3k1 mitogen-activated protein kinase kinase kinase 1 acts_upstream_of_or_within ISO MGI:2676654 (MGI:5467663|PMID:23201579), (MGI:5608927|PMID:25224220) RGD PMID:23201579 PMID:25224220 MGI:5467663 MGI:5608927 NCBI chr 2:43,348,572...43,414,706
Ensembl chr 2:43,350,098...43,414,463
JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3848564|PMID:19389375)
UniProt
RGD
PMID:19389375 GO_REF:0000024 MGI:3848564 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:66,487,839...66,495,224
JBrowse link
G Sos1 SOS Ras/Rac guanine nucleotide exchange factor 1 acts_upstream_of_or_within ISO MGI:95294 (MGI:85697|PMID:9030684) RGD PMID:9030684 MGI:85697 NCBI chr 6:14,533,870...14,613,348
Ensembl chr 6:14,533,360...14,611,107
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3052265|PMID:15254231)
UniProt
RGD
PMID:15254231 GO_REF:0000024 MGI:3052265 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2445832|MGI:3522206 (MGI:4421610|PMID:20047077) RGD PMID:20047077 MGI:4421610 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO
IEA
(PMID:17273977)
GO_REF:0000107
RGD
Ensembl
PMID:17273977 GO_REF:0000107 NCBI chr 8:58,549,743...58,568,861
Ensembl chr 8:58,549,736...58,568,860
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:1313057|PMID:9811866)
UniProt
RGD
PMID:9811866 GO_REF:0000024 MGI:1313057 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:50,674,910...50,676,904
Ensembl chr 6:50,674,678...50,677,653
JBrowse link
horizontal cell localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:3772525|PMID:18094249) RGD PMID:18094249 MGI:3772525 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
hyaloid vascular plexus regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Drd2 dopamine receptor D2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 8:49,708,903...49,772,888
Ensembl chr 8:49,708,927...49,772,875
JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626
JBrowse link
G Ninj1 ninjurin 1 acts_upstream_of_or_within ISO (MGI:4940188|PMID:19557008) RGD PMID:19557008 MGI:4940188 NCBI chr17:15,452,804...15,461,684
Ensembl chr17:15,452,813...15,461,704
JBrowse link
G Opn4 opsin 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr16:9,920,408...9,929,580
Ensembl chr16:9,920,491...10,005,711
JBrowse link
G Opn5 opsin 5 involved_in ISO (MGI:6359287|PMID:30936473) RGD PMID:30936473 MGI:6359287 NCBI chr 9:18,368,393...18,416,098
Ensembl chr 9:18,368,416...18,415,476
JBrowse link
G Slc17a6 solute carrier family 17 member 6 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 1:101,212,489...101,252,543
Ensembl chr 1:101,212,489...101,252,542
JBrowse link
G Slc6a3 solute carrier family 6 member 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 1:29,709,443...29,750,413
Ensembl chr 1:29,709,443...29,750,413
JBrowse link
G Th tyrosine hydroxylase involved_in ISS
ISO
GO_REF:0000024
(MGI:6359287|PMID:30936473)
UniProt
RGD
PMID:30936473 GO_REF:0000024 MGI:6359287 NCBI chr 1:198,071,500...198,078,832
Ensembl chr 1:198,071,503...198,109,767
JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO
PMID:17064680
(MGI:3703484|PMID:17064680)
RGD PMID:17064680 PMID:17064680 MGI:3703484, RGD:10047226 NCBI chr 5:128,445,594...128,446,454
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103223 (MGI:5429122|PMID:22627278)
Ensembl
RGD
PMID:22627278 GO_REF:0000107 MGI:5429122 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4818711|PMID:20579985)
Ensembl
RGD
PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
JBrowse link
G Pax6 paired box 6 involved_in ISO
IEA
(PMID:7550230)
GO_REF:0000107
RGD
Ensembl
PMID:7550230 GO_REF:0000107 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:9437321) RGD PMID:9437321 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:106918|MGI:2136645 (MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:5429122 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
lens development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07033887.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr11:40,749,214...40,861,752 JBrowse link
G Birc7 baculoviral IAP repeat-containing 7 acts_upstream_of_or_within ISO MGI:3045749|MGI:5796183 (MGI:5766584|PMID:26218911) RGD PMID:26218911 MGI:5766584 NCBI chr 3:168,047,824...168,052,606
Ensembl chr 3:168,047,824...168,052,606
JBrowse link
G Casp6 caspase 6 IEP RGD PMID:15161922 RGD:2301319 NCBI chr 2:218,466,063...218,478,503
Ensembl chr 2:218,466,076...218,478,502
JBrowse link
G Cdk2 cyclin dependent kinase 2 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:1,129,878...1,137,431
Ensembl chr 7:1,129,811...1,137,403
JBrowse link
G Cdk4 cyclin-dependent kinase 4 IEP RGD PMID:10620399 RGD:724665 NCBI chr 7:62,885,647...62,889,562
Ensembl chr 7:62,883,105...62,942,403
JBrowse link
G Cdon cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2653120 (MGI:4422144|PMID:19754878)
Ensembl
RGD
PMID:19754878 GO_REF:0000107 MGI:4422144 NCBI chr 8:33,775,123...33,861,635
Ensembl chr 8:33,806,183...33,859,033
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within IEP
ISO
MGI:1858025|MGI:2653028|MGI:88516 (MGI:2154010|PMID:11687536), (MGI:3617146|PMID:16439475), (MGI:85598|PMID:9023351) RGD PMID:9023351 PMID:11687536 PMID:16439475 PMID:8187157 MGI:2154010 MGI:3617146 MGI:85598, RGD:1600991 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
JBrowse link
G Cryab crystallin, alpha B acts_upstream_of_or_within ISO MGI:88515 (MGI:3617146|PMID:16439475) RGD PMID:16439475 MGI:3617146 NCBI chr 8:51,093,441...51,099,161
Ensembl chr 8:51,093,441...51,099,157
JBrowse link
G Cryba1 crystallin, beta A1 involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:2753045 PMID:21873635 RGD:1298814, RGD:13792537 NCBI chr10:62,608,373...62,614,726
Ensembl chr10:62,608,383...62,614,726
JBrowse link
G Cryba2 crystallin, beta A2 involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:4950379 (MGI:4950336|PMID:21212184)
RGD PMID:21212184 PMID:21873635 MGI:4950336, RGD:13792537 NCBI chr 9:76,447,250...76,457,968
Ensembl chr 9:76,447,251...76,450,460
JBrowse link
G Cryba4 crystallin, beta A4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:44,378,734...44,393,226
Ensembl chr12:44,378,737...44,393,221
JBrowse link
G Crybb1 crystallin, beta B1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:44,369,734...44,383,344
Ensembl chr12:44,369,735...44,383,344
JBrowse link
G Crybb2 crystallin, beta B2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:43,569,747...43,579,671
Ensembl chr12:43,569,747...43,579,671
JBrowse link
G Crybb3 crystallin, beta B3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr12:43,557,103...43,562,120
Ensembl chr12:43,557,103...43,562,120
JBrowse link
G Crybg3 crystallin beta-gamma domain containing 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr11:40,749,198...40,861,753 JBrowse link
G Cryga crystallin, gamma A acts_upstream_of_or_within
involved_in
IEP
ISO
IBA
MGI:1856493|MGI:1857595 (MGI:1333159|PMID:6510713), (MGI:65639|PMID:8034315), (MGI:69851|PMID:6877261), (MGI:71783|PMID:7088001)
PMID:21873635
RGD PMID:6510713 PMID:6877261 PMID:7088001 PMID:8034315 PMID:2338125 More... MGI:1333159 MGI:65639 MGI:69851 MGI:71783, RGD:2303725, RGD:13792537 NCBI chr 9:66,482,176...66,512,873
Ensembl chr 9:66,482,176...66,509,896
JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within
involved_in
IEP
ISO
IBA
MGI:1857597|MGI:3777015 (MGI:3691890|PMID:12426373), (MGI:3776178|PMID:18172107), (MGI:81294|PMID:8626090)
PMID:21873635
RGD PMID:8626090 PMID:12426373 PMID:18172107 PMID:2338125 PMID:21873635 MGI:3691890 MGI:3776178 MGI:81294, RGD:2303725, RGD:13792537 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520
JBrowse link
G Crygc crystallin, gamma C involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:2338125 PMID:21873635 RGD:2303725, RGD:13792537 NCBI chr 9:66,451,591...66,453,626
Ensembl chr 9:66,451,593...66,453,626
JBrowse link
G Crygd crystallin, gamma D acts_upstream_of_or_within
involved_in
IEP
ISO
IBA
MGI:1858026|MGI:3762620 (MGI:1354024|PMID:10704279), (MGI:3762268|PMID:17652744)
PMID:21873635
RGD PMID:10704279 PMID:17652744 PMID:2338125 PMID:21873635 MGI:1354024 MGI:3762268, RGD:2303725, RGD:13792537 NCBI chr 9:66,442,054...66,443,668
Ensembl chr 9:66,442,054...66,444,067
JBrowse link
G Cryge crystallin, gamma E involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:2338125 PMID:21873635 RGD:2303725, RGD:13792537 NCBI chr 9:66,429,924...66,432,521 JBrowse link
G Crygf crystallin, gamma F involved_in IEP
IBA
PMID:21873635 RGD
GO_Central
PMID:2338125 PMID:21873635 RGD:2303725, RGD:13792537 NCBI chr 9:67,448,265...67,450,429
Ensembl chr 9:67,447,954...67,450,429
JBrowse link
G Crygn crystallin, gamma N involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:10,394,020...10,401,543
Ensembl chr 4:10,394,020...10,401,543
JBrowse link
G Crygs crystallin, gamma S involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1861635 (MGI:65639|PMID:8034315), (MGI:69851|PMID:6877261)
RGD PMID:6877261 PMID:8034315 PMID:21873635 MGI:65639 MGI:69851, RGD:13792537 NCBI chr11:78,207,170...78,212,273
Ensembl chr11:78,207,170...78,212,273
JBrowse link
G Ctns cystinosin, lysosomal cystine transporter acts_upstream_of_or_within ISO MGI:2388945 (MGI:5302597|PMID:21897743) RGD PMID:21897743 MGI:5302597 NCBI chr10:57,801,551...57,817,213
Ensembl chr10:57,801,456...57,817,120
JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2680670 (MGI:2682188|PMID:14645510)
Ensembl
RGD
PMID:14645510 GO_REF:0000107 MGI:2682188 NCBI chr11:68,911,883...69,103,230
Ensembl chr11:68,911,883...69,102,689
JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO MGI:2662293 (MGI:5766588|PMID:26114487) RGD PMID:26114487 MGI:5766588 NCBI chr16:47,177,253...47,296,261
Ensembl chr16:47,177,248...47,296,107
JBrowse link
G Foxe3 forkhead box E3 involved_in ISS
ISO
PMID:17064680
(MGI:3703484|PMID:17064680)
GO_REF:0000024
(PMID:27218149)
RGD
UniProt
PMID:17064680 PMID:27218149 PMID:17064680 GO_REF:0000024 MGI:3703484, RGD:10047226 NCBI chr 5:128,445,594...128,446,454
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3045749|MGI:3768912 (MGI:5447585|PMID:23136392) RGD PMID:23136392 MGI:5447585 NCBI chr 7:52,711,255...52,792,758
Ensembl chr 7:52,711,257...52,792,743
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO MGI:2181200 (MGI:4354418|PMID:19623612) RGD PMID:19623612 MGI:4354418 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Gja1 gap junction protein, alpha 1 acts_upstream_of_or_within ISO MGI:1857177 (MGI:1267300|PMID:9620080) RGD PMID:9620080 MGI:1267300 NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
JBrowse link
G Gja8 gap junction protein, alpha 8 acts_upstream_of_or_within ISO MGI:1857499 (MGI:69851|PMID:6877261) RGD PMID:6877261 MGI:69851 NCBI chr 2:184,490,840...184,492,456
Ensembl chr 2:184,490,840...184,492,456
JBrowse link
G Gje1 gap junction protein, epsilon 1 acts_upstream_of_or_within ISO MGI:3529958 (MGI:3795311|PMID:18385072) RGD PMID:18385072 MGI:3795311 NCBI chr 1:9,086,425...9,088,138
Ensembl chr 1:9,086,348...9,088,138
JBrowse link
G Lim2 lens intrinsic membrane protein 2 acts_upstream_of_or_within ISO MGI:1862040 (MGI:1333159|PMID:6510713), (MGI:69851|PMID:6877261), (MGI:71783|PMID:7088001), (MGI:82332|PMID:8812411) RGD PMID:6510713 PMID:6877261 PMID:7088001 PMID:8812411 MGI:1333159 MGI:69851 MGI:71783 MGI:82332 NCBI chr 1:93,837,597...93,843,769
Ensembl chr 1:93,837,597...93,843,769
JBrowse link
G Maf MAF bZIP transcription factor acts_upstream_of_or_within ISO MGI:2148635|MGI:2148636|MGI:2148637 (MGI:1340085|PMID:10383433), (MGI:1350584|PMID:10603348), (MGI:3760711|PMID:12835653) RGD PMID:10383433 PMID:10603348 PMID:12835653 MGI:1340085 MGI:1350584 MGI:3760711 NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365
JBrowse link
G Med1 mediator complex subunit 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:2158098|PMID:11724781)
UniProt
RGD
PMID:11724781 GO_REF:0000024 MGI:2158098 NCBI chr10:83,145,538...83,189,260
Ensembl chr10:83,145,568...83,189,299
JBrowse link
G Mip major intrinsic protein of lens fiber involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857105 (MGI:55175|PMID:7333462)
Ensembl
RGD
PMID:7333462 GO_REF:0000107 MGI:55175 NCBI chr 7:643,502...654,573
Ensembl chr 7:647,315...654,400
JBrowse link
G Nhs NHS actin remodeling regulator involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:1861111 (MGI:64544|PMID:8282045)
RGD PMID:8282045 PMID:21873635 MGI:64544, RGD:13792537 NCBI chr  X:32,551,974...32,892,961
Ensembl chr  X:32,552,026...32,889,992
JBrowse link
G Pax6 paired box 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2156742 (MGI:69851|PMID:6877261)
Ensembl
RGD
PMID:6877261 GO_REF:0000107 MGI:69851 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO MGI:3722688 (MGI:3847057|PMID:19412548) RGD PMID:19412548 MGI:3847057 NCBI chr14:42,551,653...42,651,074
Ensembl chr14:42,552,647...42,648,669
JBrowse link
G Pds5b PDS5 cohesin associated factor B acts_upstream_of_or_within ISO MGI:3722688 (MGI:3847057|PMID:19412548) RGD PMID:19412548 MGI:3847057 NCBI chr12:202,481...345,596
Ensembl chr12:255,313...345,596
JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:3831639|PMID:19007884), (MGI:4353482|PMID:19334279)
UniProt
RGD
PMID:19007884 PMID:19334279 GO_REF:0000024 MGI:3831639 MGI:4353482 NCBI chr 1:245,001,106...245,013,881
Ensembl chr 1:245,001,164...245,013,892
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:8812486) RGD PMID:8812486 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Pygo2 pygopus family PHD finger 2 acts_upstream_of_or_within ISO MGI:3712856 (MGI:3712628|PMID:17425782) RGD PMID:17425782 MGI:3712628 NCBI chr 2:174,849,670...174,854,758
Ensembl chr 2:174,849,936...174,854,758
JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:1929788|PMID:11139622) RGD PMID:11139622 MGI:1929788 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Six5 SIX homeobox 5 acts_upstream_of_or_within ISO MGI:2148689|MGI:2148692 (MGI:1855730|PMID:10802668), (MGI:1855731|PMID:10802667) RGD PMID:10802667 PMID:10802668 MGI:1855730 MGI:1855731 NCBI chr 1:78,740,812...78,745,890
Ensembl chr 1:78,741,367...78,745,890
JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 acts_upstream_of_or_within ISO MGI:4417931 (MGI:5513052|PMID:23543054) RGD PMID:23543054 MGI:5513052 NCBI chr15:87,563,506...87,570,125
Ensembl chr15:87,563,322...87,570,393
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (MGI:5551670|PMID:24239381) RGD PMID:24239381 MGI:5551670 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:4440463 (MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:4439200 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:2151112|PMID:11641223)
GO_REF:0000107
RGD
Ensembl
PMID:11641223 GO_REF:0000107 MGI:2151112 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO (MGI:2151112|PMID:11641223) RGD PMID:11641223 MGI:2151112 NCBI chr 8:115,794,537...115,883,615
Ensembl chr 8:115,794,537...115,883,228
JBrowse link
lens fiber cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bfsp1 beaded filament structural protein 1 involved_in
acts_upstream_of_or_within
IBA
ISO
IEA
PMID:21873635
(MGI:2673300|PMID:15037121)
GO_REF:0000107
RGD
Ensembl
PMID:15037121 PMID:21873635 GO_REF:0000107 MGI:2673300, RGD:13792537 NCBI chr 3:131,195,087...131,252,668
Ensembl chr 3:131,195,087...131,229,337
JBrowse link
G Bfsp2 beaded filament structural protein 2 acts_upstream_of_or_within ISO MGI:2671074 (MGI:2673300|PMID:15037121), (MGI:3717045|PMID:17065509) RGD PMID:15037121 PMID:17065509 MGI:2673300 MGI:3717045 NCBI chr 8:104,006,226...104,063,399
Ensembl chr 8:104,006,226...104,063,399
JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:3777015 (MGI:3776178|PMID:18172107) RGD PMID:18172107 MGI:3776178 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3044679|MGI:3045749|MGI:95524 (MGI:3796810|PMID:18455718), (MGI:5447585|PMID:23136392) RGD PMID:18455718 PMID:23136392 MGI:3796810 MGI:5447585 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:95523 (MGI:3796810|PMID:18455718) RGD PMID:18455718 MGI:3796810 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3045749|MGI:3768912|MGI:97385 (MGI:5447585|PMID:23136392) RGD PMID:23136392 MGI:5447585 NCBI chr 7:52,711,255...52,792,758
Ensembl chr 7:52,711,257...52,792,743
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:2386105 (MGI:4888440|PMID:21118511) RGD PMID:21118511 MGI:4888440 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Tmod1 tropomodulin 1 involved_in IEA
ISO
GO_REF:0000107
UniProtKB:Q6NVD9 (MGI:5475090|PMID:23144950)
Ensembl
RGD
PMID:23144950 GO_REF:0000107 MGI:5475090 NCBI chr 5:60,316,445...60,393,957
Ensembl chr 5:60,338,512...60,393,956
JBrowse link
G Vim vimentin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2673300|PMID:15037121)
Ensembl
RGD
PMID:15037121 GO_REF:0000107 MGI:2673300 NCBI chr17:76,668,701...76,677,186
Ensembl chr17:76,668,647...76,677,187
JBrowse link
lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crygd crystallin, gamma D acts_upstream_of_or_within IDA
ISO
MGI:3762620 (MGI:3762268|PMID:17652744) RGD PMID:17652744 PMID:8575616 MGI:3762268, RGD:1601018 NCBI chr 9:66,442,054...66,443,668
Ensembl chr 9:66,442,054...66,444,067
JBrowse link
G Fzr1 fizzy and cell division cycle 20 related 1 acts_upstream_of_or_within ISO (MGI:3720408|PMID:17215516) RGD PMID:17215516 MGI:3720408 NCBI chr 7:8,332,029...8,343,953
Ensembl chr 7:8,332,029...8,343,952
JBrowse link
G Kdm5b lysine demethylase 5B IEP RGD PMID:24142921 RGD:9587771 NCBI chr13:46,001,589...46,073,868
Ensembl chr13:46,002,542...46,073,872
JBrowse link
G Maf MAF bZIP transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
IBA
GO_REF:0000107
MGI:2148636|MGI:2148637 (MGI:1340085|PMID:10383433), (MGI:3760711|PMID:12835653)
PMID:21873635
Ensembl
RGD
PMID:10383433 PMID:12835653 PMID:21873635 GO_REF:0000107 MGI:1340085 MGI:3760711, RGD:13792537 NCBI chr19:43,353,867...43,713,162
Ensembl chr19:43,360,342...43,712,365
JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in IEA
ISO
GO_REF:0000107
(MGI:4457460|PMID:20181838)
Ensembl
RGD
PMID:20181838 GO_REF:0000107 MGI:4457460 NCBI chr14:79,627,399...79,710,709
Ensembl chr14:79,627,399...79,710,667
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:1100860 (MGI:5447585|PMID:23136392) RGD PMID:23136392 MGI:5447585 NCBI chr 1:132,116,472...132,503,849
Ensembl chr 1:132,132,849...132,503,286
JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISO (MGI:3831639|PMID:19007884) RGD PMID:19007884 MGI:3831639 NCBI chr 1:245,001,106...245,013,881
Ensembl chr 1:245,001,164...245,013,892
JBrowse link
G Plaat1 phospholipase A and acyltransferase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr11:71,517,492...71,537,142
Ensembl chr11:71,517,493...71,527,020
JBrowse link
G Plaat3 phospholipase A and acyltransferase 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:6710184|PMID:33854238)
UniProt
RGD
PMID:33854238 GO_REF:0000024 MGI:6710184 NCBI chr 1:204,782,608...204,816,397
Ensembl chr 1:204,782,729...204,817,667
JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:2181466|PMID:12072567) RGD PMID:12072567 MGI:2181466 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Skil SKI-like proto-oncogene acts_upstream_of_or_within ISO (MGI:3720408|PMID:17215516) RGD PMID:17215516 MGI:3720408 NCBI chr 2:112,247,047...112,275,176
Ensembl chr 2:112,247,051...112,275,080
JBrowse link
G Slc7a11 solute carrier family 7 member 11 IEP RGD PMID:16043861 RGD:2315033 NCBI chr 2:134,382,002...134,517,622
Ensembl chr 2:133,963,107...134,517,536
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3720408|PMID:17215516) RGD PMID:17215516 MGI:3720408 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO
ISS
(PMID:21436445)
(MGI:4943339|PMID:21436445)
GO_REF:0000024
RGD
UniProt
PMID:21436445 GO_REF:0000024 MGI:4943339 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO (MGI:3720408|PMID:17215516) RGD PMID:17215516 MGI:3720408 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl-interactor 2 involved_in ISO (MGI:3525751|PMID:15572692) RGD PMID:15572692 MGI:3525751 NCBI chr 9:61,856,379...61,904,029
Ensembl chr 9:61,827,139...61,905,699
JBrowse link
G Atf4 activating transcription factor 4 involved_in ISS
ISO
GO_REF:0000024
(MGI:1339872|PMID:10096021), (MGI:1859108|PMID:10885750), (MGI:2158533|PMID:11806972)
UniProt
RGD
PMID:10096021 PMID:10885750 PMID:11806972 GO_REF:0000024 MGI:1339872 MGI:1859108 MGI:2158533 NCBI chr 7:111,804,135...111,806,457
Ensembl chr 7:111,804,183...111,806,446
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:3665275|MGI:3777403 (MGI:3655912|PMID:16799046), (MGI:3775669|PMID:18056999) RGD PMID:16799046 PMID:18056999 MGI:3655912 MGI:3775669 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
JBrowse link
G Crygb crystallin, gamma B acts_upstream_of_or_within ISO MGI:1857597 (MGI:3691890|PMID:12426373), (MGI:81294|PMID:8626090) RGD PMID:8626090 PMID:12426373 MGI:3691890 MGI:81294 NCBI chr 9:66,461,460...66,463,520
Ensembl chr 9:66,461,460...66,463,520
JBrowse link
G Epha2 Eph receptor A2 involved_in ISO (MGI:3831440|PMID:18948590) RGD PMID:18948590 MGI:3831440 NCBI chr 5:153,605,644...153,634,115
Ensembl chr 5:153,605,644...153,634,117
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:11850194)
(MGI:1332720|PMID:10080188)
RGD PMID:10080188 PMID:11850194 MGI:1332720 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Tbc1d20 TBC1 domain family, member 20 acts_upstream_of_or_within ISO MGI:1856684 (MGI:5551670|PMID:24239381) RGD PMID:24239381 MGI:5551670 NCBI chr 3:140,768,537...140,787,010
Ensembl chr 3:140,768,537...140,785,121
JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857137 (MGI:1316914|PMID:9851982)
Ensembl
RGD
PMID:9851982 GO_REF:0000107 MGI:1316914 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4818711|PMID:20579985)
Ensembl
RGD
PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:191,248,817...191,299,787
Ensembl chr 2:191,248,817...191,298,902
JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:67,439,327...67,619,223
Ensembl chr 4:67,440,501...67,619,223
JBrowse link
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO MGI:98364 (MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:3701404 NCBI chr13:78,120,617...78,263,306
Ensembl chr13:78,130,685...78,263,363
JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO MGI:3693322 (MGI:3692850|PMID:17066077) RGD PMID:17066077 MGI:3692850 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO MGI:101898 (MGI:3701404|PMID:17140559) RGD PMID:17140559 MGI:3701404 NCBI chr 2:117,536,929...117,539,338
Ensembl chr 2:117,536,929...117,539,338
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:1888387 (MGI:1347707|PMID:10571739) RGD PMID:10571739 MGI:1347707 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member acts_upstream_of_or_within ISO MGI:4359826 (MGI:4358852|PMID:19365570) RGD PMID:19365570 MGI:4358852 NCBI chr 2:210,525,260...210,638,674
Ensembl chr 2:210,525,260...210,638,798
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:3045749|MGI:3696062 (MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:3807101 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Cryaa crystallin, alpha A acts_upstream_of_or_within ISO MGI:1858023|MGI:3665274|MGI:3665275 (MGI:3655912|PMID:16799046), (MGI:82388|PMID:8812430) RGD PMID:8812430 PMID:16799046 MGI:3655912 MGI:82388 NCBI chr20:9,783,605...9,787,351
Ensembl chr20:9,783,605...9,787,349
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148567|MGI:3045749 (MGI:3603687|PMID:16102745)
Ensembl
RGD
PMID:16102745 GO_REF:0000107 MGI:3603687 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:1933072|PMID:11290300) RGD PMID:11290300 MGI:1933072 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G Lctl lactase-like involved_in ISO (MGI:6274960|PMID:29425878) RGD PMID:29425878 MGI:6274960 NCBI chr 8:64,618,356...64,654,851
Ensembl chr 8:64,618,350...64,639,357
JBrowse link
G Meis1 Meis homeobox 1 acts_upstream_of_or_within ISO MGI:3029063 (MGI:3028436|PMID:14713950) RGD PMID:14713950 MGI:3028436 NCBI chr14:93,155,426...93,294,373
Ensembl chr14:93,155,419...93,294,265
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:3605480 (MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:3604842 NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787
JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO MGI:3605481 (MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:3604842 NCBI chr11:54,362,712...54,461,316
Ensembl chr11:54,364,487...54,462,519
JBrowse link
G Pitx3 paired-like homeodomain 3 involved_in ISS
ISO
GO_REF:0000024
(MGI:4353482|PMID:19334279)
UniProt
RGD
PMID:19334279 GO_REF:0000024 MGI:4353482 NCBI chr 1:245,001,106...245,013,881
Ensembl chr 1:245,001,164...245,013,892
JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:1332720|PMID:10080188) RGD PMID:10080188 MGI:1332720 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:3693412 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Sox1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO MGI:2137412 (MGI:1201714|PMID:9512512) RGD PMID:9512512 MGI:1201714 NCBI chr16:77,134,795...77,139,628 JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3797299|PMID:18423449)
UniProt
RGD
PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISS
ISO
GO_REF:0000024
(MGI:4943339|PMID:21436445)
(PMID:21436445)
UniProt
RGD
PMID:21436445 GO_REF:0000024 MGI:4943339 NCBI chr 5:60,238,742...60,312,548
Ensembl chr 5:60,238,678...60,312,544
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:2176682 (MGI:1329246|PMID:9918694), (MGI:3774683|PMID:18224708) RGD PMID:9918694 PMID:18224708 MGI:1329246 MGI:3774683 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3521833 (MGI:3513737|PMID:15569927) RGD PMID:15569927 MGI:3513737 NCBI chr 7:52,711,255...52,792,758
Ensembl chr 7:52,711,257...52,792,743
JBrowse link
G Prox1 prospero homeobox 1 acts_upstream_of_or_within ISO (PMID:11850194) RGD PMID:11850194 NCBI chr13:101,669,184...101,719,804
Ensembl chr13:101,669,184...101,711,183
JBrowse link
negative regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:5629913 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
JBrowse link
G Pou4f2 POU class 4 homeobox 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5316576|PMID:21875655)
UniProt
RGD
PMID:21875655 GO_REF:0000024 MGI:5316576 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327
JBrowse link
negative regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO
PMID:16199865
(MGI:1352262|PMID:10652278), (MGI:1861492|PMID:10890982), (MGI:3603877|PMID:16199865)
RGD PMID:10652278 PMID:10890982 PMID:16199865 PMID:16199865 MGI:1352262 MGI:1861492 MGI:3603877, RGD:10047273 NCBI chr 5:128,445,594...128,446,454
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Spred1 sprouty-related, EVH1 domain containing 1 involved_in ISO (MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:6414698 NCBI chr 3:103,983,120...104,050,321
Ensembl chr 3:103,983,072...104,049,718
JBrowse link
G Spred2 sprouty-related, EVH1 domain containing 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:6414698|PMID:29501879)
UniProt
RGD
PMID:29501879 GO_REF:0000024 MGI:6414698 NCBI chr14:94,226,312...94,248,162
Ensembl chr14:94,148,837...94,249,162
JBrowse link
G Spred3 sprouty-related, EVH1 domain containing 3 involved_in ISO (MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:6414698 NCBI chr 1:84,458,779...84,470,425
Ensembl chr 1:84,459,314...84,470,249
JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 involved_in ISO (MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:6414698 NCBI chr 2:120,557,276...120,561,918
Ensembl chr 2:120,556,706...120,566,189
JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 involved_in ISO (MGI:6414698|PMID:29501879) RGD PMID:29501879 MGI:6414698 NCBI chr15:82,692,312...82,697,408
Ensembl chr15:82,692,143...82,698,009
JBrowse link
negative regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857430 (MGI:1336407|PMID:10321489)
Ensembl
RGD
PMID:10321489 GO_REF:0000107 MGI:1336407 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO MGI:3054837 (MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:3054140 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO MGI:3052661|MGI:4841554 (MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:5629913 NCBI chr 5:159,243,965...159,393,935
Ensembl chr 5:159,243,995...159,393,400
JBrowse link
negative regulation of vasculature development involved in avascular cornea development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angptl7 angiopoietin like 7 involved_in ISO (PMID:25622036) RGD PMID:25622036 NCBI chr 5:158,932,094...158,937,597
Ensembl chr 5:158,932,794...158,937,324
JBrowse link
neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actl6a actin-like 6A involved_in ISO (PMID:18816825) RGD PMID:18816825 NCBI chr 2:115,492,374...115,508,401
Ensembl chr 2:115,492,285...115,508,401
JBrowse link
G Atoh7 atonal bHLH transcription factor 7 acts_upstream_of_or_within ISO MGI:2159015 (MGI:5288596|PMID:21441919)
(PMID:21441919)
RGD PMID:21441919 MGI:5288596 NCBI chr20:25,530,826...25,531,275
Ensembl chr20:25,530,826...25,531,275
JBrowse link
G Atp2b1 ATPase plasma membrane Ca2+ transporting 1 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 7:33,735,595...33,845,226
Ensembl chr 7:33,735,871...33,843,295
JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 IEP RGD PMID:16079002 RGD:2317729 NCBI chr 4:146,896,332...147,140,665
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Atp2b3 ATPase plasma membrane Ca2+ transporting 3 IEP RGD PMID:16079002 RGD:2317729 NCBI chr  X:151,216,483...151,289,069
Ensembl chr  X:151,216,507...151,286,775
JBrowse link
G Atp2b4 ATPase plasma membrane Ca2+ transporting 4 IEP RGD PMID:16079002 RGD:2317729 NCBI chr13:45,156,137...45,255,292
Ensembl chr13:45,156,146...45,255,246
JBrowse link
G Bsg basigin (Ok blood group) involved_in ISS
ISO
GO_REF:0000024
(MGI:1888850|PMID:10967074), (MGI:1932603|PMID:11273674), (MGI:3610672|PMID:11853760)
UniProt
RGD
PMID:10967074 PMID:11273674 PMID:11853760 GO_REF:0000024 MGI:1888850 MGI:1932603 MGI:3610672 NCBI chr 7:9,993,170...10,000,387
Ensembl chr 7:9,993,170...10,000,387
JBrowse link
G Casp2 caspase 2 IEP RGD PMID:9809666 RGD:4107085 NCBI chr 4:71,149,632...71,167,388
Ensembl chr 4:71,149,669...71,167,379
JBrowse link
G Gpm6a glycoprotein m6a involved_in ISS
ISO
GO_REF:0000024
(MGI:3811956|PMID:18776950)
UniProt
RGD
PMID:18776950 GO_REF:0000024 MGI:3811956 NCBI chr16:36,641,282...36,973,477
Ensembl chr16:36,641,284...36,973,475
JBrowse link
G Optn optineurin IEP RGD PMID:17687037 RGD:7800681 NCBI chr17:73,209,572...73,260,251
Ensembl chr17:73,209,575...73,260,251
JBrowse link
G Psen1 presenilin 1 IEP RGD PMID:12401445 RGD:729595 NCBI chr 6:103,323,014...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Rab11fip4 RAB11 family interacting protein 4 acts_upstream_of_or_within ISO (MGI:3694624|PMID:17089410) RGD PMID:17089410 MGI:3694624 NCBI chr10:64,550,109...64,658,123
Ensembl chr10:64,550,177...64,654,759
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 IDA RGD PMID:2631392 RGD:9585660 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Slc17a6 solute carrier family 17 member 6 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:101,212,489...101,252,543
Ensembl chr 1:101,212,489...101,252,542
JBrowse link
G Slc17a7 solute carrier family 17 member 7 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 1:95,649,709...95,661,591
Ensembl chr 1:95,649,745...95,661,588
JBrowse link
G Slc17a8 solute carrier family 17 member 8 IEP RGD PMID:18482716 RGD:9999162 NCBI chr 7:23,994,212...24,049,498
Ensembl chr 7:23,994,217...24,048,079
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in ISO
IEA
(PMID:18816825)
GO_REF:0000107
RGD
Ensembl
PMID:18816825 GO_REF:0000107 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Smarcd3 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 involved_in
acts_upstream_of_or_within
ISO (PMID:18816825) RGD PMID:18816825 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (MGI:894212|PMID:9217007) RGD PMID:9217007 MGI:894212 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO MGI:5469314 (MGI:5466629|PMID:23129809) RGD PMID:23129809 MGI:5466629 NCBI chr 5:145,908,181...145,981,609
Ensembl chr 5:145,908,181...145,985,564
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861722 (MGI:3624188|PMID:16611695)
Ensembl
RGD
PMID:16611695 GO_REF:0000107 MGI:3624188 NCBI chr 1:218,000,470...218,152,962
Ensembl chr 1:218,042,127...218,152,961
JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1353450 (MGI:3624188|PMID:16611695)
Ensembl
RGD
PMID:16611695 GO_REF:0000107 MGI:3624188 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055 GO_REF:0000024 MGI:84247 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:4439459|PMID:20150232)
UniProt
RGD
PMID:20150232 GO_REF:0000024 MGI:4439459 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (MGI:2136715|PMID:11458394) RGD PMID:11458394 MGI:2136715 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
(MGI:4439459|PMID:20150232)
UniProt
RGD
PMID:20150232 GO_REF:0000024 MGI:4439459 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
positive regulation of amacrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5316576|PMID:21875655)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:21875655 GO_REF:0000024 GO_REF:0000107 MGI:5316576 NCBI chr 3:56,356,190...56,360,780
Ensembl chr 3:56,356,190...56,360,780
JBrowse link
G Dlx2 distal-less homeobox 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:5316576|PMID:21875655)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:21875655 GO_REF:0000024 GO_REF:0000107 MGI:5316576 NCBI chr 3:56,371,347...56,373,230
Ensembl chr 3:56,370,483...56,373,597
JBrowse link
positive regulation of lens epithelial cell proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxe3 forkhead box E3 involved_in ISS
ISO
PMID:16199865
(PMID:22527307)
(MGI:1352262|PMID:10652278), (MGI:3603877|PMID:16199865)
RGD PMID:10652278 PMID:16199865 PMID:22527307 PMID:16199865 PMID:22527307 MGI:1352262 MGI:3603877, RGD:10047273, RGD:10047255 NCBI chr 5:128,445,594...128,446,454
Ensembl chr 5:128,445,594...128,446,454
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
ISO
GO_REF:0000024
(MGI:3797299|PMID:18423449)
UniProt
RGD
PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:44,008,340...44,010,354
JBrowse link
positive regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf2 fibroblast growth factor 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:29501879)
UniProt
RGD
PMID:29501879 GO_REF:0000024 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 involved_in ISO (MGI:3604916|PMID:16162653) RGD PMID:16162653 MGI:3604916 NCBI chr 3:29,219,765...29,342,094
Ensembl chr 3:29,218,301...29,345,157
JBrowse link
positive regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casp6 caspase 6 IMP RGD PMID:12917395 RGD:2301324 NCBI chr 2:218,466,063...218,478,503
Ensembl chr 2:218,466,076...218,478,502
JBrowse link
post-embryonic camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl11b BAF chromatin remodeling complex subunit BCL11B acts_upstream_of_or_within ISO MGI:2663971 (MGI:2662810|PMID:12717433) RGD PMID:12717433 MGI:2662810 NCBI chr 6:126,834,531...126,927,720
Ensembl chr 6:126,834,531...126,928,224
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:3826935|PMID:18832390)
MGI:3574771|MGI:3583769 (MGI:3821812|PMID:18791178)
Ensembl
RGD
PMID:18791178 PMID:18832390 GO_REF:0000107 MGI:3821812 MGI:3826935 NCBI chr 9:66,117,370...66,119,127
Ensembl chr 9:66,113,112...66,121,457
JBrowse link
G Klf4 Kruppel like factor 4 acts_upstream_of_or_within ISO MGI:2183917|MGI:3045749 (MGI:3697243|PMID:17060454) RGD PMID:17060454 MGI:3697243 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
JBrowse link
G Muc4 mucin 4, cell surface associated IEP RGD PMID:11120573 RGD:2303744 NCBI chr11:68,008,245...68,053,229 JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931047 (MGI:1339868|PMID:10229225) RGD PMID:10229225 MGI:1339868 NCBI chr 9:14,955,300...14,970,641
Ensembl chr 9:14,955,300...14,970,641
JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2-antagonist/killer 1 acts_upstream_of_or_within ISO MGI:99702 (MGI:3692135|PMID:15955981) RGD PMID:15955981 MGI:3692135 NCBI chr20:5,100,480...5,109,669
Ensembl chr20:5,100,480...5,109,264
JBrowse link
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1097161 (MGI:3692135|PMID:15955981)
Ensembl
RGD
PMID:15955981 GO_REF:0000107 MGI:3692135 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Flt1 Fms related receptor tyrosine kinase 1 acts_upstream_of_or_within ISO MGI:96683 (MGI:5318610|PMID:22426483) RGD PMID:22426483 MGI:5318610 NCBI chr12:7,296,899...7,468,626
Ensembl chr12:7,297,292...7,468,626
JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO MGI:3590648 (MGI:3614611|PMID:16466397) RGD PMID:16466397 MGI:3614611 NCBI chr11:35,422,328...35,428,247
Ensembl chr11:35,422,328...35,428,254
JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:95558 (MGI:5318610|PMID:22426483)
GO_REF:0000107
RGD
Ensembl
PMID:22426483 GO_REF:0000107 MGI:5318610 NCBI chr14:32,217,871...32,261,018
Ensembl chr14:32,217,871...32,261,018
JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (MGI:5516374|PMID:24101522) RGD PMID:24101522 MGI:5516374 NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071
JBrowse link
post-embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe23 basic helix-loop-helix family, member e23 acts_upstream_of_or_within ISO MGI:3054837 (MGI:3054140|PMID:15363390) RGD PMID:15363390 MGI:3054140 NCBI chr 3:167,889,009...167,891,223
Ensembl chr 3:167,889,009...167,891,223
JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 involved_in ISO
IEA
(PMID:25406291)
GO_REF:0000107
RGD
Ensembl
PMID:25406291 GO_REF:0000107 NCBI chr14:102,610,813...102,690,027
Ensembl chr14:102,610,908...102,690,018
JBrowse link
G Fbn1 fibrillin 1 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:112,554,257...112,750,835
Ensembl chr 3:112,554,925...112,750,889
JBrowse link
G Mfap2 microfibril associated protein 2 involved_in ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 5:153,312,068...153,320,266
Ensembl chr 5:153,314,711...153,320,259
JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc66 coiled-coil domain containing 66 acts_upstream_of_or_within ISO MGI:3893603 (MGI:5141557|PMID:21680557) RGD PMID:21680557 MGI:5141557 NCBI chr16:2,662,125...2,694,031
Ensembl chr16:2,662,131...2,694,023
JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in
ISO (MGI:3051713|PMID:15316081), (MGI:3690408|PMID:16885194)
(MGI:2675211|PMID:12915475)
RGD PMID:12915475 PMID:15316081 PMID:16885194 MGI:2675211 MGI:3051713 MGI:3690408 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Dscam DS cell adhesion molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3761008 (MGI:3768917|PMID:18216855)
Ensembl
RGD
PMID:18216855 GO_REF:0000107 MGI:3768917 NCBI chr11:35,921,924...36,507,100
Ensembl chr11:35,926,896...36,507,415
JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO MGI:2668595 (MGI:1334014|PMID:10097103) RGD PMID:10097103 MGI:1334014 NCBI chr16:76,122,501...76,135,792
Ensembl chr16:76,123,842...76,135,792
JBrowse link
regulation of lens fiber cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1b cyclin-dependent kinase inhibitor 1B acts_upstream_of_or_within ISO MGI:104564 (MGI:1309707|PMID:9784491) RGD PMID:9784491 MGI:1309707 NCBI chr 4:167,760,067...167,765,177
Ensembl chr 4:167,760,181...167,764,982
JBrowse link
G Cdkn1c cyclin-dependent kinase inhibitor 1C acts_upstream_of_or_within ISO MGI:104565 (MGI:1309707|PMID:9784491) RGD PMID:9784491 MGI:1309707 NCBI chr 1:198,655,394...198,658,097
Ensembl chr 1:198,655,407...198,658,048
JBrowse link
regulation of neural retina development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll4 delta like canonical Notch ligand 4 involved_in ISO (MGI:5314555|PMID:22323600) RGD PMID:22323600 MGI:5314555 NCBI chr 3:106,317,114...106,327,004
Ensembl chr 3:106,316,986...106,326,931
JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISS
ISO
GO_REF:0000024
(MGI:3691257|PMID:17075007)
UniProt
RGD
PMID:17075007 GO_REF:0000024 MGI:3691257 NCBI chr17:82,051,281...82,053,135
Ensembl chr17:82,051,281...82,053,135
JBrowse link
G Six3 SIX homeobox 3 involved_in ISO (MGI:4837018|PMID:20890044) RGD PMID:20890044 MGI:4837018 NCBI chr 6:9,040,123...9,043,336
Ensembl chr 6:9,036,434...9,053,301
JBrowse link
regulation of retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf4 CUGBP, Elav-like family member 4 acts_upstream_of_or_within ISO (MGI:5523751|PMID:23932931) RGD PMID:23932931 MGI:5523751 NCBI chr18:16,786,578...17,065,045
Ensembl chr18:16,786,867...17,064,786
JBrowse link
regulation of retinal cell programmed cell death term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain-derived neurotrophic factor acts_upstream_of_or_within ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 3:96,165,042...96,215,621
Ensembl chr 3:96,165,042...96,215,615
JBrowse link
G Cntf ciliary neurotrophic factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:2155023|PMID:11747369)
Ensembl
RGD
PMID:11747369 GO_REF:0000107 MGI:2155023 NCBI chr 1:209,887,854...209,889,877
Ensembl chr 1:209,887,854...209,889,877
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (MGI:2155023|PMID:11747369) RGD PMID:11747369 MGI:2155023 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
retina development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ache acetylcholinesterase involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2179948 (MGI:3603700|PMID:15579149)
Ensembl
RGD
PMID:15579149 GO_REF:0000107 MGI:3603700 NCBI chr12:19,407,359...19,413,713
Ensembl chr12:19,407,360...19,413,651
JBrowse link
G Actb actin, beta IEP RGD PMID:22916200 RGD:9587758 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
JBrowse link
G Agtpbp1 ATP/GTP binding carboxypeptidase 1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:5,120,540...5,238,874
Ensembl chr17:5,120,609...5,238,869
JBrowse link
G Ahi1 Abelson helper integration site 1 acts_upstream_of_or_within ISO MGI:4360696 (MGI:4461813|PMID:20592197) RGD PMID:20592197 MGI:4461813 NCBI chr 1:15,768,047...15,886,744
Ensembl chr 1:15,762,462...15,891,041
JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:1857951 (MGI:3699582|PMID:10982921) RGD PMID:10982921 MGI:3699582 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
JBrowse link
G Bax BCL2 associated X, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857429 (MGI:1277631|PMID:9699561)
Ensembl
RGD
PMID:9699561 GO_REF:0000107 MGI:1277631 NCBI chr 1:95,940,001...95,945,407
Ensembl chr 1:95,938,808...95,945,368
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEP RGD PMID:17069773 RGD:2289001 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO MGI:2158497 (MGI:2654391|PMID:12654290) RGD PMID:12654290 MGI:2654391 NCBI chr 2:230,538,252...230,871,077
Ensembl chr 2:230,541,558...230,871,368
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 IEP RGD PMID:10482474 RGD:5129487 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G C3 complement C3 acts_upstream_of_or_within ISO (MGI:5883383|PMID:28057640) RGD PMID:28057640 MGI:5883383 NCBI chr 9:2,087,437...2,114,366
Ensembl chr 9:2,087,437...2,114,429
JBrowse link
G Cacna1f calcium voltage-gated channel subunit alpha1 F acts_upstream_of_or_within ISO MGI:3605845 (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr  X:14,868,096...14,896,413
Ensembl chr  X:14,868,024...14,896,413
JBrowse link
G Calb1 calbindin 1 acts_upstream_of_or_within ISO (PMID:10741426) RGD PMID:10741426 NCBI chr 5:29,375,624...29,402,532
Ensembl chr 5:29,375,642...29,402,431
JBrowse link
G Cep290 centrosomal protein 290 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 7:35,310,071...35,399,392
Ensembl chr 7:35,310,199...35,399,392
JBrowse link
G Cfd complement factor D acts_upstream_of_or_within ISO (MGI:5883383|PMID:28057640) RGD PMID:28057640 MGI:5883383 NCBI chr 7:9,813,148...9,814,871
Ensembl chr 7:9,813,150...9,815,053
JBrowse link
G Cfh complement factor H acts_upstream_of_or_within_positive_effect ISO (MGI:6304909|PMID:30705315)
(MGI:3760334|PMID:17921253), (MGI:5883383|PMID:28057640)
RGD PMID:17921253 PMID:28057640 PMID:30705315 MGI:3760334 MGI:5883383 MGI:6304909 NCBI chr13:51,512,376...51,613,829
Ensembl chr13:51,511,828...51,613,838
JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 involved_in ISO (PMID:15300250) RGD PMID:15300250 NCBI chr 5:21,812,007...21,995,358
Ensembl chr 5:21,812,070...21,995,358
JBrowse link
G Clcn2 chloride voltage-gated channel 2 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr11:80,197,741...80,211,657
Ensembl chr11:80,198,153...80,211,657
JBrowse link
G Cln8 CLN8, transmembrane ER and ERGIC protein acts_upstream_of_or_within ISO MGI:1856959 (MGI:3695117|PMID:15565184), (MGI:4849309|PMID:21052544) RGD PMID:15565184 PMID:21052544 MGI:3695117 MGI:4849309 NCBI chr16:74,749,662...74,759,553
Ensembl chr16:74,749,662...74,759,774
JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (MGI:5315300|PMID:22447858), (MGI:5608935|PMID:25147295) RGD PMID:22447858 PMID:25147295 MGI:5315300 MGI:5608935 NCBI chr13:50,801,484...50,989,261
Ensembl chr13:50,800,959...50,989,261
JBrowse link
G Crx cone-rod homeobox acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 1:76,540,141...76,545,818
Ensembl chr 1:76,540,141...76,545,818
JBrowse link
G Dcx doublecortin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:107,430,767...107,573,612
Ensembl chr  X:107,430,767...107,507,476
JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISS
ISO
GO_REF:0000024
(MGI:3848562|PMID:19389377)
UniProt
RGD
PMID:19389377 GO_REF:0000024 MGI:3848562 NCBI chr 1:56,312,062...56,320,177
Ensembl chr 1:56,312,066...56,320,179
JBrowse link
G Drd4 dopamine receptor D4 IEP RGD PMID:18778704 RGD:7175073 NCBI chr 1:196,396,366...196,400,824
Ensembl chr 1:196,396,366...196,399,553
JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 IEP RGD PMID:23954924 RGD:11251759 NCBI chr17:19,685,218...19,776,668
Ensembl chr17:19,685,215...19,776,661
JBrowse link
G Gdnf glial cell derived neurotrophic factor IEP RGD PMID:16650834 RGD:2324945 NCBI chr 2:56,893,992...56,919,935
Ensembl chr 2:56,895,010...56,917,209
JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 8:108,350,935...108,355,671
Ensembl chr 8:108,350,935...108,355,671
JBrowse link
G Gnb1 G protein subunit beta 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 5:166,075,508...166,142,223
Ensembl chr 5:166,075,629...166,142,124
JBrowse link
G Grm6 glutamate metabotropic receptor 6 acts_upstream_of_or_within ISO MGI:3605835 (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr10:35,167,985...35,182,717
Ensembl chr10:35,167,985...35,182,717
JBrowse link
G Grn granulin precursor acts_upstream_of_or_within ISO MGI:3762618 (MGI:6101836|PMID:28728022) RGD PMID:28728022 MGI:6101836 NCBI chr10:87,387,672...87,393,777
Ensembl chr10:87,387,638...87,393,775
JBrowse link
G Hpca hippocalcin IEP RGD PMID:7789406 RGD:9686441 NCBI chr 5:141,455,616...141,466,252
Ensembl chr 5:141,455,613...141,463,841
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158690 (MGI:3831471|PMID:18940586) RGD PMID:18940586 MGI:3831471 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Il4 interleukin 4 IEP RGD PMID:23070471 RGD:7829830 NCBI chr10:37,771,203...37,776,750
Ensembl chr10:37,771,203...37,776,750
JBrowse link
G Impdh1 inosine monophosphate dehydrogenase 1 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 4:57,801,842...57,817,434
Ensembl chr 4:57,801,831...57,819,076
JBrowse link
G Impdh2 inosine monophosphate dehydrogenase 2 IEP RGD PMID:18295529 RGD:5144133 NCBI chr 8:109,256,705...109,261,365
Ensembl chr 8:109,256,728...109,261,359
JBrowse link
G Jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase acts_upstream_of_or_within ISO MGI:3580706 (MGI:3580691|PMID:15345036) RGD PMID:15345036 MGI:3580691 NCBI chr10:102,041,131...102,047,182
Ensembl chr10:102,041,120...102,047,182
JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
JBrowse link
G Lamb2 laminin subunit beta 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1344394 (MGI:4454394|PMID:19907020)
Ensembl
RGD
PMID:19907020 GO_REF:0000107 MGI:4454394 NCBI chr 8:109,178,367...109,190,552
Ensembl chr 8:109,178,409...109,190,549
JBrowse link
G Lamc3 laminin subunit gamma 3 acts_upstream_of_or_within ISO MGI:99916 (MGI:4454394|PMID:19907020) RGD PMID:19907020 MGI:4454394 NCBI chr 3:15,165,220...15,226,697
Ensembl chr 3:15,165,220...15,226,697
JBrowse link
G Lhx1 LIM homeobox 1 acts_upstream_of_or_within ISO (PMID:10741426) RGD PMID:10741426 NCBI chr10:69,396,829...69,403,617
Ensembl chr10:69,396,829...69,403,617
JBrowse link
G Lhx2 LIM homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97490 (MGI:3836385|PMID:19146846)
Ensembl
RGD
PMID:19146846 GO_REF:0000107 MGI:3836385 NCBI chr 3:22,113,619...22,143,909
Ensembl chr 3:22,126,007...22,143,908
JBrowse link
G Lif LIF, interleukin 6 family cytokine IDA RGD PMID:16643897 RGD:2326157 NCBI chr14:79,131,049...79,140,486
Ensembl chr14:79,134,574...79,140,482
JBrowse link
G Lpcat1 lysophosphatidylcholine acyltransferase 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 1:29,766,070...29,816,401
Ensembl chr 1:29,766,071...29,816,401
JBrowse link
G Max MYC associated factor X IEP RGD PMID:14603520 RGD:2316820 NCBI chr 6:95,636,857...95,662,204
Ensembl chr 6:95,636,858...95,662,137
JBrowse link
G Mdm1 Mdm1 nuclear protein involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2664154 (MGI:4849309|PMID:21052544)
RGD PMID:21052544 PMID:21873635 MGI:4849309, RGD:13792537 NCBI chr 7:53,729,603...53,766,034
Ensembl chr 7:53,729,610...53,766,034
JBrowse link
G Mertk MER proto-oncogene, tyrosine kinase acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 3:115,939,351...116,045,141
Ensembl chr 3:115,939,351...116,046,554
JBrowse link
G Mfrp membrane frizzled-related protein acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 8:44,445,636...44,450,859
Ensembl chr 8:44,445,697...44,450,859
JBrowse link
G Mir183 microRNA 183 acts_upstream_of_or_within ISO MGI:2676846|MGI:3619440 (MGI:5469752|PMID:23341629), (MGI:6108693|PMID:28819115) RGD PMID:23341629 PMID:28819115 MGI:5469752 MGI:6108693 NCBI chr 4:58,788,614...58,788,723
Ensembl chr 4:58,788,614...58,788,723
JBrowse link
G Mir96 microRNA 96 acts_upstream_of_or_within ISO MGI:2676846|MGI:2676847 (MGI:5469752|PMID:23341629), (MGI:6108693|PMID:28819115) RGD PMID:23341629 PMID:28819115 MGI:5469752 MGI:6108693 NCBI chr 4:58,788,411...58,788,516
Ensembl chr 4:58,788,411...58,788,516
JBrowse link
G Musk muscle associated receptor tyrosine kinase IEP RGD PMID:16899069 RGD:2317091 NCBI chr 5:73,058,427...73,169,696
Ensembl chr 5:73,058,121...73,171,932
JBrowse link
G Myh10 myosin heavy chain 10 acts_upstream_of_or_within ISO MGI:2386445 (MGI:1099556|PMID:9356462), (MGI:1933038|PMID:11283949) RGD PMID:9356462 PMID:11283949 MGI:1099556 MGI:1933038 NCBI chr10:53,393,901...53,525,174
Ensembl chr10:53,394,389...53,525,165
JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:3605480 (MGI:3604842|PMID:15728677) RGD PMID:15728677 MGI:3604842 NCBI chr 8:44,101,776...44,164,863
Ensembl chr 8:44,101,776...44,189,787
JBrowse link
G Neurod4 neuronal differentiation 4 IEP RGD PMID:15345241 RGD:2311603 NCBI chr 7:7,090,048...7,102,018
Ensembl chr 7:7,090,045...7,102,030
JBrowse link
G Nos3 nitric oxide synthase 3 IEP RGD PMID:16639026 RGD:7771562 NCBI chr 4:10,793,834...10,814,170
Ensembl chr 4:10,793,834...10,814,166
JBrowse link
G Nphp1 nephrocystin 1 involved_in ISO (MGI:3839506|PMID:19208653) RGD PMID:19208653 MGI:3839506 NCBI chr 3:114,960,650...115,016,234
Ensembl chr 3:114,960,650...115,016,234
JBrowse link
G Nphp4 nephrocystin 4 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 5:162,986,157...163,073,708
Ensembl chr 5:162,988,370...163,073,706
JBrowse link
G Nr2e1 nuclear receptor subfamily 2, group E, member 1 acts_upstream_of_or_within ISO MGI:2176490|MGI:2176560 (MGI:2151063|PMID:11997145), (MGI:3624573|PMID:16702404) RGD PMID:11997145 PMID:16702404 MGI:2151063 MGI:3624573 NCBI chr20:46,050,134...46,070,569
Ensembl chr20:46,050,414...46,073,949
JBrowse link
G Nr2e3 nuclear receptor subfamily 2, group E, member 3 acts_upstream_of_or_within ISO MGI:1346317 (MGI:3624051|PMID:12407160), (MGI:4849309|PMID:21052544) RGD PMID:12407160 PMID:21052544 MGI:3624051 MGI:4849309 NCBI chr 8:60,365,581...60,373,383
Ensembl chr 8:60,366,124...60,373,163
JBrowse link
G Nr4a2 nuclear receptor subfamily 4, group A, member 2 IEP RGD PMID:22714110 RGD:124713571 NCBI chr 3:41,689,847...41,707,036
Ensembl chr 3:41,689,851...41,697,877
JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (MGI:5619875|PMID:25542970) RGD PMID:25542970 MGI:5619875 NCBI chr17:5,558,992...5,870,299
Ensembl chr17:5,559,043...5,869,136
JBrowse link
G Opa1 OPA1, mitochondrial dynamin like GTPase IEP RGD PMID:15505078 RGD:1547836 NCBI chr11:71,108,100...71,185,170
Ensembl chr11:71,109,873...71,185,109
JBrowse link
G Pax4 paired box 4 IEP RGD PMID:19012751 RGD:2311636 NCBI chr 4:57,058,453...57,065,995
Ensembl chr 4:57,058,462...57,063,408
JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within
involved_in
IEP
ISO
IEA
MGI:96785 (MGI:3836385|PMID:19146846)
GO_REF:0000107
RGD
Ensembl
PMID:19146846 PMID:19012751 GO_REF:0000107 MGI:3836385, RGD:2311636 NCBI chr 3:92,128,772...92,157,022
Ensembl chr 3:92,135,637...92,157,014
JBrowse link
G Pde6a phosphodiesterase 6A involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:4849309|PMID:21052544)
RGD PMID:21052544 PMID:21873635 MGI:4849309, RGD:13792537 NCBI chr18:54,676,863...54,749,644
Ensembl chr18:54,676,863...54,748,816
JBrowse link
G Pde6b phosphodiesterase 6B involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:4849309|PMID:21052544)
RGD PMID:21052544 PMID:21873635 MGI:4849309, RGD:13792537 NCBI chr14:1,323,310...1,366,450
Ensembl chr14:1,323,310...1,366,450
JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (MGI:5607451|PMID:25224828) RGD PMID:25224828 MGI:5607451 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
JBrowse link
G Pfdn5 prefoldin subunit 5 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 7:133,451,778...133,456,516
Ensembl chr 7:133,451,453...133,456,516
JBrowse link
G Pou4f2 POU class 4 homeobox 2 acts_upstream_of_or_within ISO MGI:2176272|MGI:3582493 (MGI:3621691|PMID:9630743), (MGI:80981|PMID:8637595) RGD PMID:8637595 PMID:9630743 MGI:3621691 MGI:80981 NCBI chr19:29,486,686...29,490,327
Ensembl chr19:29,486,686...29,490,327
JBrowse link
G Prph2 peripherin 2 acts_upstream_of_or_within ISO MGI:1856523|MGI:6367794|MGI:97998 (MGI:3610839|PMID:15964665), (MGI:4849309|PMID:21052544), (MGI:5905515|PMID:28053051) RGD PMID:15964665 PMID:21052544 PMID:28053051 MGI:3610839 MGI:4849309 MGI:5905515 NCBI chr 9:14,066,149...14,081,454
Ensembl chr 9:14,066,156...14,081,454
JBrowse link
G Ptn pleiotrophin IEP RGD PMID:16914133 PMID:8453763 RGD:9831439, RGD:9831456 NCBI chr 4:65,293,731...65,375,572
Ensembl chr 4:65,293,734...65,375,456
JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within ISO MGI:97858 (MGI:81656|PMID:8681798) RGD PMID:8681798 MGI:81656 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:8,406,492...9,051,288
JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO MGI:97857 (MGI:81656|PMID:8681798) RGD PMID:8681798 MGI:81656 NCBI chr 7:133,367,833...133,390,301
Ensembl chr 7:133,367,833...133,390,177
JBrowse link
G Rbp4 retinol binding protein 4 acts_upstream_of_or_within ISO MGI:2445721 (MGI:2150869|PMID:11562477) RGD PMID:11562477 MGI:2150869 NCBI chr 1:235,893,917...235,901,315
Ensembl chr 1:235,893,917...235,901,399
JBrowse link
G Rd3 RD3 regulator of GUCY2D involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:4849309|PMID:21052544)
(MGI:52860|PMID:8486383)
RGD PMID:8486383 PMID:21052544 PMID:21873635 MGI:4849309 MGI:52860, RGD:13792537 NCBI chr13:103,551,823...103,562,925
Ensembl chr13:103,552,857...103,562,622
JBrowse link
G Ret ret proto-oncogene IEP RGD PMID:16650834 RGD:2324945 NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
JBrowse link
G Rho rhodopsin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:4849309|PMID:21052544)
Ensembl
RGD
PMID:21052544 GO_REF:0000107 MGI:4849309 NCBI chr 4:148,975,597...148,988,693
Ensembl chr 4:148,980,611...148,985,773
JBrowse link
G Rnpep arginyl aminopeptidase IEP RGD PMID:15500823 RGD:2325937 NCBI chr13:46,699,458...46,717,829
Ensembl chr13:46,699,463...46,717,998
JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO MGI:102791|MGI:2181662 (MGI:5905515|PMID:28053051) RGD PMID:28053051 MGI:5905515 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
JBrowse link
G Rorb RAR-related orphan receptor B involved_in ISS
ISO
GO_REF:0000024
(MGI:5546314|PMID:23652001)
UniProt
RGD
PMID:23652001 GO_REF:0000024 MGI:5546314 NCBI chr 1:216,363,629...216,544,390
Ensembl chr 1:216,363,629...216,544,390
JBrowse link
G Rp1 RP1, axonemal microtubule associated involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
(MGI:4849309|PMID:21052544)
RGD PMID:21052544 PMID:21873635 MGI:4849309, RGD:13792537 NCBI chr 5:15,121,104...15,582,363
Ensembl chr 5:15,121,133...15,579,363
JBrowse link
G Rp1l1 RP1 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr15:38,259,595...38,271,269
Ensembl chr15:38,259,928...38,270,316
JBrowse link
G Rpe65 retinoid isomerohydrolase RPE65 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 2:248,766,497...248,798,403
Ensembl chr 2:248,766,612...248,798,403
JBrowse link
G Rpgrip1 RPGR interacting protein 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr15:24,814,576...24,867,522
Ensembl chr15:24,814,614...24,868,605
JBrowse link
G Rpl24 ribosomal protein L24 acts_upstream_of_or_within ISO MGI:1856685 (MGI:1097191|PMID:9331275), (MGI:1332363|PMID:10049578) RGD PMID:9331275 PMID:10049578 MGI:1097191 MGI:1332363 NCBI chr11:44,653,937...44,659,346
Ensembl chr11:44,653,937...44,659,370
JBrowse link
G Rrm1 ribonucleotide reductase catalytic subunit M1 IEP RGD PMID:2647502 RGD:5133699 NCBI chr 1:156,823,960...156,848,262
Ensembl chr 1:156,823,960...156,848,261
JBrowse link
G Serpinf1 serpin family F member 1 IEP RGD PMID:21738387 RGD:8655555 NCBI chr10:60,250,198...60,262,593
Ensembl chr10:60,249,708...60,262,646
JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (MGI:3693412|PMID:17003410) RGD PMID:17003410 MGI:3693412 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Slc1a1 solute carrier family 1 member 1 involved_in ISO (MGI:6492417|PMID:28703795) RGD PMID:28703795 MGI:6492417 NCBI chr 1:226,549,932...226,631,925
Ensembl chr 1:226,549,842...226,630,402
JBrowse link
G Slc4a5 solute carrier family 4 member 5 acts_upstream_of_or_within ISO (MGI:5292606|PMID:21705333) RGD PMID:21705333 MGI:5292606 NCBI chr 4:115,710,101...115,810,330
Ensembl chr 4:115,725,592...115,810,323
JBrowse link
G Sox8 SRY-box transcription factor 8 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:98371 (MGI:4368088|PMID:19490914)
UniProt
RGD
PMID:19490914 GO_REF:0000024 MGI:4368088 NCBI chr10:14,584,829...14,589,818
Ensembl chr10:14,584,829...14,589,818
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:98370 (MGI:4368088|PMID:19490914)
UniProt
RGD
PMID:19490914 GO_REF:0000024 MGI:4368088 NCBI chr10:97,806,485...97,811,994
Ensembl chr10:97,806,485...97,811,994
JBrowse link
G Tbc1d32 TBC1 domain family, member 32 acts_upstream_of_or_within ISO MGI:4440463 (MGI:4439200|PMID:20159594) RGD PMID:20159594 MGI:4439200 NCBI chr20:35,359,865...35,590,992
Ensembl chr20:35,359,863...35,590,415
JBrowse link
G Tcirg1 T-cell immune regulator 1, ATPase H+ transporting V0 subunit A3 acts_upstream_of_or_within ISO MGI:3852642 (MGI:4819740|PMID:20711468) RGD PMID:20711468 MGI:4819740 NCBI chr 1:201,127,034...201,138,787
Ensembl chr 1:201,127,034...201,138,742
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 IEP RGD PMID:23700402 RGD:11041783 NCBI chr 2:24,380,135...24,432,099
Ensembl chr 2:24,380,225...24,432,099
JBrowse link
G Tgif1 TGFB-induced factor homeobox 1 acts_upstream_of_or_within ISO (MGI:3826282|PMID:18973577) RGD PMID:18973577 MGI:3826282 NCBI chr 9:110,748,094...110,757,714
Ensembl chr 9:110,720,921...110,757,802
JBrowse link
G Tgif2 TGFB-induced factor homeobox 2 acts_upstream_of_or_within ISO (MGI:3826300|PMID:18926818) RGD PMID:18926818 MGI:3826300 NCBI chr 3:145,333,152...145,348,599
Ensembl chr 3:145,333,418...145,348,596
JBrowse link
G Ttll5 tubulin tyrosine ligase like 5 acts_upstream_of_or_within ISO (PMID:24791901) RGD PMID:24791901 NCBI chr 6:105,483,091...105,700,920
Ensembl chr 6:105,483,191...105,700,934
JBrowse link
G Tub TUB bipartite transcription factor acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 1:163,008,198...163,030,958
Ensembl chr 1:162,951,931...163,026,812
JBrowse link
G Tulp1 TUB like protein 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr20:6,412,170...6,424,312
Ensembl chr20:6,412,171...6,424,073
JBrowse link
G Uchl3 ubiquitin C-terminal hydrolase L3 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr15:78,485,304...78,527,355
Ensembl chr15:78,485,315...78,527,355
JBrowse link
G Ush2a usherin IEP RGD PMID:12160733 RGD:634438 NCBI chr13:99,837,445...100,503,935
Ensembl chr13:99,837,445...100,503,922
JBrowse link
G