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Gene: Casz1 (castor zinc finger 1) Rattus norvegicus

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Symbol:

Casz1

Name:

castor zinc finger 1

RGD ID:

1563533

Description:

Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II and regulation of neuron differentiation. Predicted to act upstream of or within negative regulation of cell differentiation and retina morphogenesis in camera-type eye. Predicted to be located in chromatin; cytosol; and nucleoplasm. Predicted to be active in nucleus. Orthologous to human CASZ1 (castor zinc finger 1); INTERACTS WITH (+)-schisandrin B; alpha-Zearalanol; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC313713; RGD1563533; similar to novel protein; zinc finger protein castor homolog 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CASZ1 (castor zinc finger 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Casz1 (castor zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Casz1 (castor zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CASZ1 (castor zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CASZ1 (castor zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Casz1 (castor zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CASZ1 (castor zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CASZ1 (castor zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Casz1 (castor zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GPI (glucose-6-phosphate isomerase)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Casz1 (castor zinc finger 1)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CASZ1 (castor zinc finger 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	casz1 (castor zinc finger 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	cas	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	CG7512	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	casz1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	164,527,083 - 164,677,037 (+)	NCBI		GRCr8
mRatBN7.2	5	159,243,965 - 159,393,935 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	159,243,995 - 159,393,400 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	165,625,119 - 165,777,053 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	165,724,027 - 165,774,616 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	169,374,846 - 169,427,383 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	165,979,472 - 166,030,420 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	157,518,835 - 157,666,098 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Imported Disease Annotations - ClinVar

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Casz1	Rat	autism spectrum disorder		ISO	RGD:1606535	8554872	ClinVar Annotator: match by term: Autism spectrum disorder	ClinVar	PMID:25741868
Casz1	Rat	Charcot-Marie-Tooth disease type 2		ISO	RGD:1606535	8554872	ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 2	ClinVar	PMID:28492532
Casz1	Rat	chromosome 1p36 deletion syndrome		ISO	RGD:1606535	8554872	ClinVar Annotator: match by term: Chromosome 1p36 deletion syndrome	ClinVar
Casz1	Rat	dilated cardiomyopathy		ISO	RGD:1606535	8554872	ClinVar Annotator: match by term: Primary dilated cardiomyopathy	ClinVar	PMID:25741868
Casz1	Rat	Familial Atrial Fibrillation 6		ISO	RGD:1606535	8554872	ClinVar Annotator: match by term: Atrial fibrillation, familial, 6	ClinVar	PMID:28492532
Casz1	Rat	immunodeficiency 14		ISO	RGD:1606535	8554872	ClinVar Annotator: match by term: Immunodeficiency 14	ClinVar	PMID:28492532
Casz1	Rat	Peroxisome Biogenesis Disorder, Complementation Group K		ISO	RGD:1606535	8554872	ClinVar Annotator: match by term: Peroxisome biogenesis disorder, complementation group K	ClinVar	PMID:28492532

Imported Disease Annotations - CTD

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Casz1	Rat	atrial fibrillation		ISO	RGD:1606535	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:29892015\|PMID:30061737
Casz1	Rat	Prostatic Neoplasms		ISO	RGD:1606535	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:29662167
Casz1	Rat	Stroke		ISO	RGD:1606535	11554173	CTD Direct Evidence: marker/mechanism	CTD	PMID:29531354

Imported Disease Annotations - MGI

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Casz1	Rat	chromosome 1p36 deletion syndrome		ISS	RGD:1557539	13592920	OMIM:607872	MouseDO

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Casz1	Rat	(+)-schisandrin B	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of CASZ1 mRNA]	CTD	PMID:31150632
Casz1	Rat	1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene	multiple interactions	ISO	RGD:1557539	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
Casz1	Rat	1,2-dichloroethane	increases expression	ISO	RGD:1557539	6480464	ethylene dichloride results in increased expression of CASZ1 mRNA	CTD	PMID:28960355
Casz1	Rat	1,2-dimethylhydrazine	multiple interactions	ISO	RGD:1557539	6480464	[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CASZ1 mRNA	CTD	PMID:22206623
Casz1	Rat	17beta-estradiol	multiple interactions	ISO	RGD:1606535	6480464	[Estradiol co-treated with TGFB1 protein] results in decreased expression of CASZ1 mRNA	CTD	PMID:30165855
Casz1	Rat	2,2',4,4',5,5'-hexachlorobiphenyl	multiple interactions	ISO	RGD:1557539	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
Casz1	Rat	2,2',5,5'-tetrachlorobiphenyl	multiple interactions	ISO	RGD:1557539	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
Casz1	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	ISO	RGD:1557539	6480464	Tetrachlorodibenzodioxin results in increased expression of CASZ1 mRNA	CTD	PMID:37172768
Casz1	Rat	2,4,4'-trichlorobiphenyl	multiple interactions	ISO	RGD:1557539	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
Casz1	Rat	3,4-methylenedioxymethamphetamine	decreases expression	ISO	RGD:1557539	6480464	N-Methyl-3,4-methylenedioxyamphetamine results in decreased expression of CASZ1 mRNA	CTD	PMID:26251327
Casz1	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	RGD:1557539	6480464	bisphenol S affects the methylation of CASZ1 exon; bisphenol S affects the methylation of CASZ1 more ...	CTD	PMID:31683443\|PMID:33297965
Casz1	Rat	4,4'-sulfonyldiphenol	decreases methylation	ISO	RGD:1606535	6480464	bisphenol S results in decreased methylation of CASZ1 gene	CTD	PMID:31601247
Casz1	Rat	5-aza-2'-deoxycytidine	increases expression	ISO	RGD:1606535	6480464	Decitabine results in increased expression of CASZ1 mRNA	CTD	PMID:17940511
Casz1	Rat	aflatoxin B1	increases methylation	ISO	RGD:1606535	6480464	Aflatoxin B1 results in increased methylation of CASZ1 intron	CTD	PMID:30157460
Casz1	Rat	Aflatoxin B2 alpha	increases methylation	ISO	RGD:1606535	6480464	aflatoxin B2 results in increased methylation of CASZ1 intron	CTD	PMID:30157460
Casz1	Rat	aldehydo-D-glucose	increases expression	ISO	RGD:1557539	6480464	Glucose results in increased expression of CASZ1 mRNA	CTD	PMID:33448797
Casz1	Rat	aldehydo-D-glucose	multiple interactions	ISO	RGD:1557539	6480464	fucoxanthin inhibits the reaction [Glucose results in increased expression of CASZ1 mRNA]	CTD	PMID:33448797
Casz1	Rat	all-trans-retinoic acid	decreases expression	ISO	RGD:1606535	6480464	Tretinoin results in decreased expression of CASZ1 mRNA	CTD	PMID:21934132\|PMID:33167477
Casz1	Rat	alpha-Zearalanol	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of CASZ1 mRNA	CTD	PMID:35163327
Casz1	Rat	antirheumatic drug	affects expression	ISO	RGD:1606535	6480464	Antirheumatic Agents affects the expression of CASZ1 mRNA	CTD	PMID:24449571
Casz1	Rat	arsane	affects methylation	ISO	RGD:1606535	6480464	Arsenic affects the methylation of CASZ1 gene	CTD	PMID:25304211
Casz1	Rat	arsane	multiple interactions	ISO	RGD:1606535	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Casz1	Rat	arsenic atom	affects methylation	ISO	RGD:1606535	6480464	Arsenic affects the methylation of CASZ1 gene	CTD	PMID:25304211
Casz1	Rat	arsenic atom	multiple interactions	ISO	RGD:1606535	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Casz1	Rat	atrazine	increases expression	ISO	RGD:1606535	6480464	Atrazine results in increased expression of CASZ1 mRNA	CTD	PMID:22378314
Casz1	Rat	atrazine	affects methylation	EXP		6480464	Atrazine affects the methylation of CASZ1 gene	CTD	PMID:35440735
Casz1	Rat	benzo[a]pyrene	decreases methylation	ISO	RGD:1557539	6480464	Benzo(a)pyrene results in decreased methylation of CASZ1 intron	CTD	PMID:27901495
Casz1	Rat	benzo[a]pyrene	affects methylation	ISO	RGD:1606535	6480464	Benzo(a)pyrene affects the methylation of CASZ1 5' UTR; Benzo(a)pyrene affects the methylation of CASZ1 intron	CTD	PMID:27901495\|PMID:30157460
Casz1	Rat	benzo[b]fluoranthene	decreases expression	ISO	RGD:1557539	6480464	benzo(b)fluoranthene results in decreased expression of CASZ1 mRNA	CTD	PMID:26377693
Casz1	Rat	benzo[e]pyrene	increases methylation	ISO	RGD:1606535	6480464	benzo(e)pyrene results in increased methylation of CASZ1 intron	CTD	PMID:30157460
Casz1	Rat	beta-lapachone	increases expression	ISO	RGD:1606535	6480464	beta-lapachone results in increased expression of CASZ1 mRNA	CTD	PMID:38218311
Casz1	Rat	bis(2-ethylhexyl) phthalate	increases expression	ISO	RGD:1557539	6480464	Diethylhexyl Phthalate results in increased expression of CASZ1 mRNA	CTD	PMID:19850644
Casz1	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	RGD:1606535	6480464	Diethylhexyl Phthalate results in decreased expression of CASZ1 mRNA	CTD	PMID:31163220
Casz1	Rat	bis(2-ethylhexyl) phthalate	multiple interactions	ISO	RGD:1557539	6480464	PPARA protein promotes the reaction [Diethylhexyl Phthalate results in increased expression of CASZ1 mRNA]	CTD	PMID:19850644
Casz1	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CASZ1 mRNA	CTD	PMID:25181051
Casz1	Rat	bisphenol A	increases expression	ISO	RGD:1557539	6480464	bisphenol A results in increased expression of CASZ1 mRNA	CTD	PMID:32156529
Casz1	Rat	bisphenol A	decreases methylation	ISO	RGD:1606535	6480464	bisphenol A results in decreased methylation of CASZ1 gene	CTD	PMID:31601247
Casz1	Rat	bisphenol A	multiple interactions	ISO	RGD:1606535	6480464	[bisphenol A co-treated with Fulvestrant] affects the methylation of CASZ1 gene	CTD	PMID:31601247
Casz1	Rat	bisphenol F	increases methylation	ISO	RGD:1606535	6480464	bisphenol F results in increased methylation of CASZ1 gene	CTD	PMID:31601247
Casz1	Rat	buta-1,3-diene	decreases expression	ISO	RGD:1557539	6480464	1,3-butadiene results in decreased expression of CASZ1 mRNA	CTD	PMID:29038090
Casz1	Rat	butanal	increases expression	ISO	RGD:1606535	6480464	butyraldehyde results in increased expression of CASZ1 mRNA	CTD	PMID:26079696
Casz1	Rat	calcitriol	increases expression	ISO	RGD:1606535	6480464	Calcitriol results in increased expression of CASZ1 mRNA	CTD	PMID:26485663
Casz1	Rat	carbon nanotube	decreases expression	ISO	RGD:1557539	6480464	Nanotubes, Carbon analog results in decreased expression of CASZ1 mRNA; Nanotubes, Carbon results in decreased more ...	CTD	PMID:25554681
Casz1	Rat	choline	multiple interactions	ISO	RGD:1557539	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression more ...	CTD	PMID:20938992
Casz1	Rat	chromium(6+)	multiple interactions	ISO	RGD:1606535	6480464	[zinc chromate results in increased abundance of chromium hexavalent ion] which results in decreased expression more ...	CTD	PMID:38479592
Casz1	Rat	chrysene	increases expression	ISO	RGD:1557539	6480464	chrysene results in increased expression of CASZ1 mRNA	CTD	PMID:26377693
Casz1	Rat	Cuprizon	decreases expression	EXP		6480464	Cuprizone results in decreased expression of CASZ1 mRNA	CTD	PMID:27523638
Casz1	Rat	D-glucose	multiple interactions	ISO	RGD:1557539	6480464	fucoxanthin inhibits the reaction [Glucose results in increased expression of CASZ1 mRNA]	CTD	PMID:33448797
Casz1	Rat	D-glucose	increases expression	ISO	RGD:1557539	6480464	Glucose results in increased expression of CASZ1 mRNA	CTD	PMID:33448797
Casz1	Rat	Dibutyl phosphate	affects expression	ISO	RGD:1606535	6480464	di-n-butylphosphoric acid affects the expression of CASZ1 mRNA	CTD	PMID:37042841
Casz1	Rat	dicrotophos	increases expression	ISO	RGD:1606535	6480464	dicrotophos results in increased expression of CASZ1 mRNA	CTD	PMID:28302478
Casz1	Rat	dorsomorphin	multiple interactions	ISO	RGD:1606535	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Casz1	Rat	doxorubicin	decreases expression	ISO	RGD:1606535	6480464	Doxorubicin results in decreased expression of CASZ1 mRNA	CTD	PMID:29803840
Casz1	Rat	ethyl methanesulfonate	increases expression	ISO	RGD:1606535	6480464	Ethyl Methanesulfonate results in increased expression of CASZ1 mRNA	CTD	PMID:23649840
Casz1	Rat	fenvalerate	increases expression	EXP		6480464	fenvalerate results in increased expression of CASZ1 mRNA	CTD	PMID:30307764
Casz1	Rat	folic acid	multiple interactions	ISO	RGD:1557539	6480464	[1,2-Dimethylhydrazine co-treated with Folic Acid] results in decreased expression of CASZ1 mRNA; [Methionine deficiency co-treated more ...	CTD	PMID:20938992\|PMID:22206623
Casz1	Rat	folic acid	decreases expression	ISO	RGD:1557539	6480464	Folic Acid results in decreased expression of CASZ1 mRNA	CTD	PMID:25629700
Casz1	Rat	formaldehyde	increases expression	ISO	RGD:1606535	6480464	Formaldehyde results in increased expression of CASZ1 mRNA	CTD	PMID:23649840
Casz1	Rat	fucoxanthin	multiple interactions	ISO	RGD:1557539	6480464	fucoxanthin inhibits the reaction [Glucose results in increased expression of CASZ1 mRNA]	CTD	PMID:33448797
Casz1	Rat	fulvestrant	multiple interactions	ISO	RGD:1606535	6480464	[bisphenol A co-treated with Fulvestrant] affects the methylation of CASZ1 gene	CTD	PMID:31601247
Casz1	Rat	gentamycin	increases expression	EXP		6480464	Gentamicins results in increased expression of CASZ1 mRNA	CTD	PMID:33387578
Casz1	Rat	glucose	increases expression	ISO	RGD:1557539	6480464	Glucose results in increased expression of CASZ1 mRNA	CTD	PMID:33448797
Casz1	Rat	glucose	multiple interactions	ISO	RGD:1557539	6480464	fucoxanthin inhibits the reaction [Glucose results in increased expression of CASZ1 mRNA]	CTD	PMID:33448797
Casz1	Rat	L-methionine	multiple interactions	ISO	RGD:1557539	6480464	[Methionine deficiency co-treated with Choline deficiency co-treated with Folic Acid deficiency] results in increased expression more ...	CTD	PMID:20938992
Casz1	Rat	lead(0)	affects expression	ISO	RGD:1606535	6480464	Lead affects the expression of CASZ1 mRNA	CTD	PMID:28903495
Casz1	Rat	manganese atom	multiple interactions	ISO	RGD:1606535	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Casz1	Rat	manganese(0)	multiple interactions	ISO	RGD:1606535	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Casz1	Rat	manganese(II) chloride	multiple interactions	ISO	RGD:1606535	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Casz1	Rat	methapyrilene	increases methylation	ISO	RGD:1606535	6480464	Methapyrilene results in increased methylation of CASZ1 intron	CTD	PMID:30157460
Casz1	Rat	methotrexate	increases expression	ISO	RGD:1606535	6480464	Methotrexate results in increased expression of CASZ1 mRNA	CTD	PMID:24449571
Casz1	Rat	methyl methanesulfonate	increases expression	ISO	RGD:1606535	6480464	Methyl Methanesulfonate results in increased expression of CASZ1 mRNA	CTD	PMID:23649840
Casz1	Rat	N-methyl-4-phenylpyridinium	increases expression	ISO	RGD:1606535	6480464	1-Methyl-4-phenylpyridinium results in increased expression of CASZ1 mRNA	CTD	PMID:24810058
Casz1	Rat	okadaic acid	increases expression	ISO	RGD:1606535	6480464	Okadaic Acid results in increased expression of CASZ1 mRNA	CTD	PMID:38832940
Casz1	Rat	paracetamol	affects expression	ISO	RGD:1557539	6480464	Acetaminophen affects the expression of CASZ1 mRNA	CTD	PMID:17562736
Casz1	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of CASZ1 mRNA	CTD	PMID:33387578
Casz1	Rat	paracetamol	increases expression	ISO	RGD:1606535	6480464	Acetaminophen results in increased expression of CASZ1 mRNA	CTD	PMID:29067470
Casz1	Rat	PCB138	multiple interactions	ISO	RGD:1557539	6480464	[2,4,4'-trichlorobiphenyl co-treated with 2,5,2',5'-tetrachlorobiphenyl co-treated with 2,4,5,2',5'-pentachlorobiphenyl co-treated with 2,2',3',4,4',5-hexachlorobiphenyl co-treated with 2,4,5,2',4',5'-hexachlorobiphenyl co-treated with more ...	CTD	PMID:25510870
Casz1	Rat	perfluorooctanoic acid	multiple interactions	EXP		6480464	[Zeranol co-treated with perfluorooctanoic acid] results in decreased expression of CASZ1 mRNA	CTD	PMID:35163327
Casz1	Rat	pirinixic acid	increases expression	ISO	RGD:1557539	6480464	pirinixic acid results in increased expression of CASZ1 mRNA	CTD	PMID:23811191
Casz1	Rat	SB 431542	multiple interactions	ISO	RGD:1606535	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386
Casz1	Rat	sodium arsenite	increases expression	ISO	RGD:1606535	6480464	sodium arsenite results in increased expression of CASZ1 mRNA	CTD	PMID:38568856
Casz1	Rat	sodium arsenite	multiple interactions	ISO	RGD:1606535	6480464	[[sodium arsenite results in increased abundance of Arsenic] co-treated with [manganese chloride results in increased more ...	CTD	PMID:39836092
Casz1	Rat	sulforaphane	decreases expression	ISO	RGD:1606535	6480464	sulforaphane results in decreased expression of CASZ1 mRNA	CTD	PMID:31838189
Casz1	Rat	tetrachloromethane	multiple interactions	EXP		6480464	schizandrin B inhibits the reaction [Carbon Tetrachloride results in increased expression of CASZ1 mRNA]	CTD	PMID:31150632
Casz1	Rat	tetrachloromethane	increases expression	EXP		6480464	Carbon Tetrachloride results in increased expression of CASZ1 mRNA	CTD	PMID:31150632
Casz1	Rat	thioacetamide	increases expression	EXP		6480464	Thioacetamide results in increased expression of CASZ1 mRNA	CTD	PMID:34492290
Casz1	Rat	titanium dioxide	increases expression	ISO	RGD:1557539	6480464	titanium dioxide results in increased expression of CASZ1 mRNA	CTD	PMID:23557971
Casz1	Rat	titanium dioxide	increases methylation	ISO	RGD:1557539	6480464	titanium dioxide results in increased methylation of CASZ1 gene	CTD	PMID:35295148
Casz1	Rat	titanium dioxide	decreases methylation	ISO	RGD:1557539	6480464	titanium dioxide results in decreased methylation of CASZ1 gene	CTD	PMID:35295148
Casz1	Rat	tributylstannane	increases expression	ISO	RGD:1557539	6480464	tributyltin results in increased expression of CASZ1 mRNA	CTD	PMID:31939706
Casz1	Rat	trichloroethene	increases expression	ISO	RGD:1557539	6480464	Trichloroethylene results in increased expression of CASZ1 mRNA	CTD	PMID:25549359
Casz1	Rat	trichostatin A	increases expression	ISO	RGD:1606535	6480464	trichostatin A results in increased expression of CASZ1 mRNA	CTD	PMID:17940511\|PMID:24935251
Casz1	Rat	triclosan	decreases expression	ISO	RGD:1606535	6480464	Triclosan results in decreased expression of CASZ1 mRNA	CTD	PMID:30510588
Casz1	Rat	valproic acid	increases methylation	ISO	RGD:1606535	6480464	Valproic Acid results in increased methylation of CASZ1 gene	CTD	PMID:29154799
Casz1	Rat	valproic acid	increases expression	ISO	RGD:1606535	6480464	Valproic Acid results in increased expression of CASZ1 mRNA	CTD	PMID:23179753\|PMID:24383497\|PMID:24935251\|PMID:26272509
Casz1	Rat	valproic acid	multiple interactions	ISO	RGD:1606535	6480464	[NOG protein co-treated with Valproic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in increased more ...	CTD	PMID:27188386

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Casz1	Rat	cell differentiation	acts_upstream_of	ISO	RGD:1557539	1624291	MGI:3052661\|MGI:4841554 PMID:25654255	RGD	PMID:25654255
Casz1	Rat	negative regulation of amacrine cell differentiation	acts_upstream_of_or_within	ISO	RGD:1557539	1624291	MGI:3052661\|MGI:4841554 PMID:25654255	RGD	PMID:25654255
Casz1	Rat	negative regulation of glial cell differentiation	acts_upstream_of_or_within	ISO	RGD:1557539	1624291	MGI:3052661\|MGI:4841554 PMID:25654255	RGD	PMID:25654255
Casz1	Rat	negative regulation of neuron differentiation	acts_upstream_of_or_within	ISO	RGD:1557539	1624291	MGI:3052661\|MGI:4841554 PMID:25654255	RGD	PMID:25654255
Casz1	Rat	negative regulation of retinal cone cell fate commitment	acts_upstream_of_or_within	ISO	RGD:1557539	1624291	MGI:3052661\|MGI:4841554 PMID:25654255	RGD	PMID:25654255
Casz1	Rat	neuron differentiation	acts_upstream_of	ISO	RGD:1557539	1624291	MGI:3052661\|MGI:4841554 PMID:25654255	RGD	PMID:25654255
Casz1	Rat	positive regulation of DNA-templated transcription	involved_in	ISO	RGD:1606535	1624291	PMID:27693370	RGD	PMID:27693370
Casz1	Rat	positive regulation of DNA-templated transcription	involved_in	IEA	UniProtKB:Q86V15\|ensembl:ENSP00000366221	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Casz1	Rat	positive regulation of transcription by RNA polymerase II	involved_in	ISO	RGD:1606535	1624291	PMID:27693370	RGD	PMID:27693370
Casz1	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IEA	UniProtKB:Q86V15\|ensembl:ENSP00000366221	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Casz1	Rat	positive regulation of transcription by RNA polymerase II	involved_in	IBA	PANTHER:PTN000278753\|UniProtKB:Q86V15	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Casz1	Rat	radial glial cell differentiation	acts_upstream_of	ISO	RGD:1557539	1624291	MGI:3052661\|MGI:4841554 PMID:25654255	RGD	PMID:25654255
Casz1	Rat	regulation of DNA-templated transcription	involved_in	IEA	InterPro:IPR040373	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Casz1	Rat	regulation of neuron differentiation	involved_in	IBA	MGI:1196251\|PANTHER:PTN000278753	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Casz1	Rat	retinal bipolar neuron differentiation	acts_upstream_of_or_within	ISO	RGD:1557539	1624291	PMID:24467707	RGD	PMID:24467707
Casz1	Rat	retinal rod cell fate commitment	acts_upstream_of_or_within	ISO	RGD:1557539	1624291	MGI:3052661\|MGI:4841554 PMID:25654255	RGD	PMID:25654255

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Casz1	Rat	chromatin	located_in	ISO	RGD:1606535	1624291	PMID:27693370	RGD	PMID:27693370
Casz1	Rat	chromatin	located_in	IEA	UniProtKB:Q86V15\|ensembl:ENSP00000366221	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Casz1	Rat	cytosol	located_in	IEA	UniProtKB:Q86V15\|ensembl:ENSP00000366221	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Casz1	Rat	cytosol	located_in	ISO	RGD:1606535\|UniProtKB:Q86V15-1\|UniProtKB:Q86V15-2	1624291		RGD	GO_REF:0000052
Casz1	Rat	nucleoplasm	located_in	IEA	UniProtKB:Q86V15\|ensembl:ENSP00000366221	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Casz1	Rat	nucleoplasm	located_in	ISO	RGD:1606535\|UniProtKB:Q86V15-1\|UniProtKB:Q86V15-2	1624291		RGD	GO_REF:0000052
Casz1	Rat	nucleus	is_active_in	IBA	FB:FBgn0004878\|PANTHER:PTN000278753\|UniProtKB:Q86V15	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Casz1	Rat	DNA-binding transcription activator activity, RNA polymerase II-specific	enables	ISO	RGD:1606535	1624291	PMID:27693370	RGD	PMID:27693370
Casz1	Rat	DNA-binding transcription activator activity, RNA polymerase II-specific	enables	IEA	UniProtKB:Q86V15\|ensembl:ENSP00000366221	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Casz1	Rat	DNA-binding transcription factor activity, RNA polymerase II-specific	enables	IBA	PANTHER:PTN000278753\|UniProtKB:Q86V15	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Casz1	Rat	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	ISO	RGD:1606535	1624291	PMID:27693370	RGD	PMID:27693370
Casz1	Rat	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IEA	UniProtKB:Q86V15\|ensembl:ENSP00000366221	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Casz1	Rat	RNA polymerase II transcription regulatory region sequence-specific DNA binding	enables	IBA	PANTHER:PTN000278753\|UniProtKB:Q86V15	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Casz1	Rat	zinc ion binding	enables	IEA	UniProtKB-KW:KW-0863	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

Disease Annotations Click to see Annotation Detail View

atrial fibrillation (ISO)

autism spectrum disorder (ISO)

Charcot-Marie-Tooth disease type 2 (ISO)

chromosome 1p36 deletion syndrome (ISO,ISS)

dilated cardiomyopathy (ISO)

Familial Atrial Fibrillation 6 (ISO)

immunodeficiency 14 (ISO)

Peroxisome Biogenesis Disorder, Complementation Group K (ISO)

Prostatic Neoplasms (ISO)

Stroke (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4,4'-trichlorobiphenyl (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP,ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

butanal (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

choline (ISO)

chromium(6+) (ISO)

chrysene (ISO)

Cuprizon (EXP)

D-glucose (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

fenvalerate (EXP)

folic acid (ISO)

formaldehyde (ISO)

fucoxanthin (ISO)

fulvestrant (ISO)

gentamycin (EXP)

glucose (ISO)

L-methionine (ISO)

lead(0) (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methapyrilene (ISO)

methotrexate (ISO)

methyl methanesulfonate (ISO)

N-methyl-4-phenylpyridinium (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

PCB138 (ISO)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

tributylstannane (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (ISO)

negative regulation of amacrine cell differentiation (ISO)

negative regulation of glial cell differentiation (ISO)

negative regulation of neuron differentiation (ISO)

negative regulation of retinal cone cell fate commitment (ISO)

neuron differentiation (ISO)

positive regulation of DNA-templated transcription (IEA,ISO)

positive regulation of transcription by RNA polymerase II (IBA,IEA,ISO)

radial glial cell differentiation (ISO)

regulation of DNA-templated transcription (IEA)

regulation of neuron differentiation (IBA)

retinal bipolar neuron differentiation (ISO)

retinal rod cell fate commitment (ISO)

Cellular Component

chromatin (IEA,ISO)

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (IBA)

Molecular Function

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (IBA,IEA,ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:24467707	PMID:25654255	PMID:27693370

Genomics

Comparative Map Data

Casz1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	164,527,083 - 164,677,037 (+)	NCBI		GRCr8
mRatBN7.2	5	159,243,965 - 159,393,935 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	159,243,995 - 159,393,400 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	5	165,625,119 - 165,777,053 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	165,724,027 - 165,774,616 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	169,374,846 - 169,427,383 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	165,979,472 - 166,030,420 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	5	157,518,835 - 157,666,098 (+)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

CASZ1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	10,636,604 - 10,796,646 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	10,636,604 - 10,796,650 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	10,696,661 - 10,856,703 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	10,619,248 - 10,779,294 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	9,808,055 - 9,967,917 (-)	NCBI		Celera
Cytogenetic Map	1	p36.22	NCBI
HuRef	1	9,850,697 - 10,009,398 (-)	NCBI		HuRef
CHM1_1	1	10,684,386 - 10,844,453 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	10,180,201 - 10,340,363 (-)	NCBI		T2T-CHM13v2.0

Casz1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	148,888,823 - 149,039,350 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	148,888,886 - 149,039,346 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	148,804,366 - 148,954,893 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	148,804,429 - 148,954,889 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	148,178,501 - 148,329,001 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	147,648,192 - 147,788,930 (+)	NCBI		MGSCv36	mm8
Celera	4	151,067,937 - 151,218,394 (+)	NCBI		Celera
Cytogenetic Map	4	E2	NCBI
cM Map	4	78.87	NCBI

Casz1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955486	2,923,239 - 2,975,835 (+)	NCBI	ChiLan1.0	ChiLan1.0

CASZ1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	217,466,144 - 217,588,144 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	216,112,244 - 216,234,246 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	9,396,936 - 9,557,100 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	10,630,416 - 10,778,567 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	10,622,519 - 10,677,091 (-)	Ensembl	panpan1.1		panPan2

CASZ1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	85,194,640 - 85,218,068 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	85,176,161 - 85,232,920 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	81,769,949 - 81,812,168 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	85,903,378 - 85,945,601 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	85,844,387 - 85,966,963 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	82,650,892 - 82,693,107 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	83,653,486 - 83,695,698 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	84,716,224 - 84,758,454 (+)	NCBI		UU_Cfam_GSD_1.0

Casz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	33,993,178 - 34,009,091 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936623	4,467,837 - 4,494,390 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936623	4,478,421 - 4,503,207 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CASZ1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	70,878,983 - 70,933,357 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	70,876,329 - 71,029,495 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	64,810,472 - 64,828,934 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CASZ1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	120,986,451 - 121,144,311 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666054	24,935,600 - 25,060,001 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Casz1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624818	2,024,461 - 2,076,551 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624818	2,024,553 - 2,078,708 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Casz1
523 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	217
Count of miRNA genes:	143
Interacting mature miRNAs:	159
Transcripts:	ENSRNOT00000018000, ENSRNOT00000055621
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	124965598	166875058	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	151113452	166875058	Rat
1576314	Eutr1	Estrogen induced uterine response QTL 1			uterus integrity trait (VT:0010575)	pyometritis severity score (CMO:0002009)	5	2138965	166875058	Rat
2302369	Scl60	Serum cholesterol level QTL 60	3.13		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	143608201	161165651	Rat
631562	Apr2	Acute phase response QTL 2	3.7		blood murinoglobulin 1 amount (VT:0010597)	plasma murinoglobulin 1 level (CMO:0001931)	5	135927956	166875058	Rat
634349	Bp139	Blood pressure QTL 139		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	128924607	166875058	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	135929696	166875058	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	126424772	166875058	Rat
1549904	Neuinf1	Neuroinflammation QTL 1	3	0	nervous system integrity trait (VT:0010566)	blood T lymphocyte count (CMO:0000110)	5	154828214	166875058	Rat
738018	Anxrr4	Anxiety related response QTL 4	5.1		exploratory behavior trait (VT:0010471)	percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)	5	130130159	166875058	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	144377876	161317411	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	128506074	166875058	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	60293434	161481680	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	131345754	166875058	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	151113452	164465185	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	82394392	166664054	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	127798274	166875058	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	46711509	161317411	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	132717196	165560427	Rat
1641920	Colcs1	Colorectal carcinoma susceptibility QTL 1	2.99	0.0055	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	5	121846814	166846814	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	151006154	161165494	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	127798274	166875058	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	128506074	166875058	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	143069996	166846814	Rat

Markers in Region

BB450868

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	159,393,723 - 159,393,806 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	165,776,841 - 165,776,923	NCBI	Rnor6.0
Rnor_5.0	5	169,427,171 - 169,427,253	UniSTS	Rnor5.0
RGSC_v3.4	5	166,032,263 - 166,032,345	UniSTS	RGSC3.4
Celera	5	157,665,886 - 157,665,968	UniSTS
Cytogenetic Map	5	q36	UniSTS

D4Ertd432e

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	159,377,476 - 159,377,680 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	165,760,588 - 165,760,791	NCBI	Rnor6.0
Rnor_5.0	5	169,410,919 - 169,411,122	UniSTS	Rnor5.0
RGSC_v3.4	5	166,016,010 - 166,016,213	UniSTS	RGSC3.4
Celera	5	157,649,637 - 157,649,840	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH131569

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	159,389,668 - 159,389,869 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	165,772,780 - 165,772,980	NCBI	Rnor6.0
Rnor_5.0	5	169,423,111 - 169,423,311	UniSTS	Rnor5.0
RGSC_v3.4	5	166,028,202 - 166,028,402	UniSTS	RGSC3.4
Celera	5	157,661,829 - 157,662,029	UniSTS
RH 3.4 Map	5	1110.6	UniSTS
Cytogenetic Map	5	q36	UniSTS

BE096150

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	159,378,318 - 159,378,475 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	165,761,430 - 165,761,586	NCBI	Rnor6.0
Rnor_5.0	5	169,411,761 - 169,411,917	UniSTS	Rnor5.0
RGSC_v3.4	5	166,016,852 - 166,017,008	UniSTS	RGSC3.4
Celera	5	157,650,479 - 157,650,635	UniSTS
RH 3.4 Map	5	1108.4	UniSTS
Cytogenetic Map	5	q36	UniSTS

RH138182

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	159,383,756 - 159,383,932 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	165,766,868 - 165,767,043	NCBI	Rnor6.0
Rnor_5.0	5	169,417,199 - 169,417,374	UniSTS	Rnor5.0
RGSC_v3.4	5	166,022,290 - 166,022,465	UniSTS	RGSC3.4
Celera	5	157,655,917 - 157,656,092	UniSTS
RH 3.4 Map	10	171.3	UniSTS
Cytogenetic Map	5	q36	UniSTS

BI282303

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	159,393,130 - 159,393,243 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	165,776,248 - 165,776,360	NCBI	Rnor6.0
Rnor_5.0	5	169,426,578 - 169,426,690	UniSTS	Rnor5.0
RGSC_v3.4	5	166,031,670 - 166,031,782	UniSTS	RGSC3.4
Celera	5	157,665,293 - 157,665,405	UniSTS
RH 3.4 Map	5	1110.4	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	80	79	48	25	48	6	207	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427668	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764317	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008764318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017593880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603149	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC123476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000018000 ⟹ ENSRNOP00000018000

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	159,367,350 - 159,391,847 (+)	Ensembl
Rnor_6.0 Ensembl	5	165,724,027 - 165,774,616 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094206 ⟹ ENSRNOP00000091853

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	159,340,420 - 159,393,400 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103298 ⟹ ENSRNOP00000079561

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	159,383,382 - 159,393,400 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109654 ⟹ ENSRNOP00000081497

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	5	159,243,995 - 159,393,400 (+)	Ensembl

RefSeq Acc Id:

NM_001427668 ⟹ NP_001414597

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	164,527,112 - 164,677,037 (+)	NCBI

RefSeq Acc Id:

XM_008764317 ⟹ XP_008762539

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	164,623,536 - 164,676,535 (+)	NCBI
mRatBN7.2	5	159,330,273 - 159,393,935 (+)	NCBI
Rnor_6.0	5	165,724,074 - 165,777,053 (+)	NCBI

Sequence:

show sequence

CCCTCCTGCCAAACTGTTACCCTGAGTGTTACCGTCAGGAGCAATGACATCAGGATTTTAAAAC
AACTTGTTATTCGGGGAGTAATCAGTTGCAATTAGGCATTAATTAAGTATTATGAAAGTTGATT
ATTTAAGTGAATTCGGCTTTCGACTCTCCGACTATGAGTTTGGGACCAAGGAGCGGAGAATGGA
TCTTGGAACAGCTGAAAGCACCCGGTGCACCGACCCACCTGCAGGCAAGCCTCCAATGGCAGCC
AAGCGCAAAGGCGGCCTGAAGCTCAACGCCATCTGTGCCAAGCTAAGCCGGCAGGTGGTCGTGG
AGAAGGGAGCAGAGGCTGGCTCCCAAGCTGAAGGCAGTCCACTACGTCCCCGGGACAGAGAGCG
CAGTGGCCCCGAGTCTGCGGCGACCCGGGCTCCCCGAAGTGAGGAAGACAAGAGGCGGGCAGTG
ATCGAGAAGTGGGTCAACGGAGAGTACTGTGAGGAGCCCGCACCCACGCCAGTGTTGGGGCGCA
TCGTCCGCGAGGGCTCGGAGCTGCCCCCAGAGGGCGTCTACATGGTCCAGCCGCAGGGCTGCAG
TGACGAAGAAGACCATGCAGAAGAGCCCTCAAAAGATAACAGTATCCTGGGGGAGAAGGACTCA
GATGGTACAAAAGATGACAGCGGCCCCAGTGCCAAGCAAGCTTCAGGAGAAGCCTCCTCTCTGA
GGGACTACGCTGCTTCCACCATGACCGAGTTCCTCGGCATGTTTGGCTACGACGACCAGAACAC
CAGGGATGAGCTGGCCAGAAAGATCAGCTTTGAGAAGCTGCATGCAGGCTCCACCCCTGAGGTG
GTCGCGTCTTCCATGCTGCCCTCTTCTGAGGACACCCTCAGCAAGCGGGCACGCTTCTCCAAAT
ACGAGGAATACATTCGGAAACTCAAGGCTGGCGAGCAACTTCCCTGGCCAGCCCATGGCAGCAA
GGCTGAGGACCGCGCGGGCAAGGAGGTGGTGGGCCCCTTGCCCAGCCTACGGCTACCCAGCAAC
ACTGCCCACCTGGAGACCAAGGCCACCATCTTGCCACTGCCATCCCACAGCAGTGTCCAGATGC
AGAACCTGGTAGCCCGTGCTTCTAAGTATGACTTCTTCATCCACAAACTGAAGACGGGTGAGAG
CCTGAGGCCCCAGAATGGAAGCACTTACAAGAAGCCATCCAAGTATGACCTGGAGAACGTCAAG
TACCTGCACCTCTTCAAACCCGGGGAAGGTAGCCCTGACATGGGCGGGGCCATTGCCTTCAAGA
CAGGCAAGGTGGGGCGCCCCTCCAAGTACGACGTTCGGGGCATCCAGAAGCCGGGCACTACCAA
GATTCCGCCGGCCCCCAGCCTGGTTCCTACACCCCTCACCAATGTGCCCAGTGCTCCCAGCGCC
CCTGGGCCAGGACCCGAGCCACCTGCCTCCCTGTCCTTCAACACTCCCGAGTACCTGAAGTCAA
CCTTTTCCAAAACAGACTCCATCACCACAGGAACTGTCTCCACTGTCAAGAACGGATTGCCCAC
AGATAAACCAGCTGTCACCGAAGATGTAAACATATACCAGAAATATATTGCCAGGTTCTCAGGA
AGTCAGCACTGCGGCCACATCCATTGCGCCTACCAGTACCGCGAGCACTATCACTGTCTGGACC
CAGAGTGCAACTACCAGAGGTTCACAAGCAAGCAGGACGTGATCCGACATTACAACATGCACAA
GAAGCGAGACAACTCCCTGCAGCACGGCTTCATGCGCTTCAGCCCGCTGGACGATTGCAGCGTC
TACTACCACGGCTGCCACCTCAATGGGAAGAGCACCCACTACCACTGCATGCAGGTGGGATGTA
ACAAGGTGTACACAAGTACCTCAGACGTCATGACCCATGAGAACTTCCACAAGAAGAACACCCA
GCTCATCAATGACGGCTTCCAGCGCTTCCGGGCCACCGAGGACTGCGGCACGGCTGACTGTCAG
TTCTACGGACAGAAGACCACACACTTCCACTGCAGGCGCCCCGGCTGCACGTTTACCTTCAAGA
ACAAGTGTGACATCGAGAAGCACAAAAGCTACCACATCAAGGACGACGCCTACGCCAAGGATGG
CTTCAAGAAGTTCTACAAATATGAGGAGTGCAAATACGAGGGCTGCGTGTACAGCAAGGCCACC
AACCACTTCCACTGCATCCGCGCCGGCTGCGGCTTCACCTTCACCTCCACCAGCCAGATGACCT
CACACAAGCGCAAGCACGAGCGCCGGCACATCCGGTCCTCCGGTGCCCTGGGGCTGCCGGCCTC
CCTGCTGGGCACCAAGGACACGGAACATGAGGAGTCCAGCAATGACGACCTTGTGGACTTCTCT
GCCCTGAGCAGCAAGAACTCCAGCCTGAGCGCCTCCCCCAACAGCCAGCAATCTTCCGCATCCC
TGGCCGCTGCGGCTGCTGCCACCACTGCCGAGGCTGTCCCAAGTGCCGCCAAGCCTCCCAATAG
CAAGATGGCAGGCCTGCTGCCCCAGGGCCTGTCCGGTTCCATTCCCCTGGCCTTGGCCCTCTCT
AACTCAGGCCTGCCCACCACCACACCCTATTTCCCTCTCCTTCCTGGCCGTGGGAGCGCCTCAC
TGCCTGTGGGATCTCCAGGGCTCCTGGGCTCCATGACCTCTGGGGCCACAACCTCGGCGACCCC
CGACATGCCAGCTCTGATGGCTTCTGGAGCTGGGGACTCAGCCCCCACAGCTGCCACCTCTCTC
TCGGTGCCCCCTGCCTCCATCATGGAGAGGATCTCTGCGAGCAAAGGCCTCATCTCACCCATGA
TGGCTAGACTGGCTGCGGCCGCCCTCAAGCCCTCTGCCACCTTTGACCCAGGAAGTGGGCAGCA
GTCCACCCCCACCAAGTTCCCCCAGGCCCAGGTGAAGCAGGAGCCTGACAGTGCTGGCACCCCG
GGTCCCCACGAGGCCTCCCAAGACCGCAGTCTAGACCTGACTGTGAAGGAGCCCAGTAATGAAT
CAAATGGCCACGCAGTCCCGGCAAATTCATCTCTTTTATCCTCGCTTATGAATAAGATGTCTCA
GGGCAACCCCAGCCTTGGAAACTTGCTGAACATCAAGACAGAAGTGGAGGGGAGCCCCGCCGGG
GAGCCCTCGCCTTTCTTGGGCAAGGCCGTGAAGGCACTAGTTCAAGAGAAGCTGTCGGAGCCCT
GGAAAGTGTACCTCCGCAGGTTCGGCACCAAGGACTTCTGCGATGCCCAGTGTGACTTCCTCCA
CAAGGCCCACTTCCATTGTGTGGTGGAGGAGTGCGGTGCGCTTTTCAGCACCCTGGACGGAGCC
ATTAAACATGCGAATTTCCACTTCCGGACGGAGGGAGGAACAGCAAAGGGAACCACAGAGGCTT
CCTTCCCAACCTCTGCTGCAGAGACCAAACCTCCCTTGGCACCCTCGTCCCCGCCAGCACCTCC
TGGCACCATGGTCCCTGGATCTTCTCTGGAGGGGCCTGCTCCCAGCCCCGTCTCCGTGCCCTCC
ACCCCCACCCTGCTCGCCTGGAAGCAACTGGCTTCTACCATACCCCAGATGCCTCAGATTCCCT
CATCAGTGCCTCACCTGCCCACTTCGCCCCTGGCGACGACGTCTCTAGAGAGTGCCAAGCCTCA
GGTCAAACCCGGGTTCCTCCAGTTCCAGGACAACGATCCATGCCTGGCGACGGATTGCAAGTAC
GCCAGCAAGTTCCACTTCCACTGTCTCTTCGGGAACTGCAAGTACGTCTGTAAGACCTCAGGCA
AGGCCGAGTCCCACTGCTTGGACCACATCAACCCCAGCAACAGCCTGGTGAACGTGCGAGACCA
GTTTGCTTACTACTCTCTGCAGTGTCTGTGTCCCAACCAGCACTGTGAGTTCCGGATGCGTGGG
CACTACCACTGCCTCCGGACGGGCTGCTACTTTGTCACCAACATCACCACCAAACTTCCGTGGC
ACATAAAGAAGCACGAGAAAGCTGAGCGGCGGGCAGCCAACGGGTTCAAATACTTCACCAAGCG
TGAGGAGTGCGGAAGGCTAGGCTGCAAGTACAACCAGGTGAACAGTCACTTCCACTGCATCCGG
GAAGGCTGCCAGTTCTCTTTTCTCCTCAAGCACCAGATGACCTCGCATGCCCGGAAGCACATGC
GGAGAATGCTGGGGAAGAACTTCGACCGAGTGCCCCCATCCCAGGGTCCCCCGAGCCTAATGGA
TGCCGAGACAGACGAGGGCATGGACTACACGGGCTGCAGCCCCGGCGCGGCATCCTCGGAGTCT
TCCACCATGGACCGCAGCTGCTCCAGCACCCCTGTGGGCAACGAAAGCACAGCCGCAGGCTGCC
CGGTTCCTCCTCCTCCTCCTCTTCCTCCTCCTGCTGCGGCTGGTGATGAGGCTGCTCGTGGGGC
TGCACCGCCCACCCTGACTCCATCCTTCCCACCGGCTGTGCTCCGGCCGCCCCTCCCTCCCCTC
CCATGCCTCTTCTCTCCCTCCTGTCTGTCATACTCTCTGCTCAGTACCACTCTCGGAGCCAGCC
GGGGCCTGGCCCACCCCATCAGCAGCCCGTCCAGCTTCCCGCCCATCACTGCCACTCCAACTCC
AGTAAAAAGGGACGCCCCCCTAGTTCAGGATGCTGCAGGGAACACCATCTCCATGCCGACAGCC
TCAGGGGCCAAAAAGCGCTTTTGGATCATCGAGGATATGTCTCCCTTTGGCAAGCGAAGGAAGA
CAGCCTCGTCTCGGAAGATGCTGGACGAGGGCATGATGCTGGAGGGCTTCCGGCGCTTTGACCT
CTACGAGGACTGCAAGGATACCGCCTGCCAGTTCTCGCTCAAGGTCACCCACTACCACTGCACG
CGGGAGAACTGCGGCTACAAGTTCTGCGGGCGCACGCACATGTACAAGCACGCACAGCACCACG
ACCGCGTGGACAACCTGGTGCTGGACGACTTCAAGCGCTTCAAGGCCTCGCTCAGCTGCCACTT
CGCCGACTGCCCGTTCTCGGGCACCAGCACGCACTTCCACTGCCTGCGCTGCCGCTTCCGCTGC
ACAGACAGCACCAAGGTCACTGCGCACCGCAAGCACCACGGCAAGCAGGACGTGATCAGCGCCG
CTGGCTTCTGCCAGTTCAGCTCGAGCGCCGACTGCGCGGTGCCCGACTGCAAGTACAAGCTCAA
GTGCTCGCACTTCCACTGCACCTACCCGGGCTGCCGCCACACAGTGGTGGGCATGTCGCAGATG
GACTCGCACAAGCGCAAGCACGAGAAGCAGGAGCGAGGGGAGCCTCCCGCAGCCTCGCCGGGTG
CGCCCGTCAGCCTGGACGGCTCGCTCACGCTGGCCGCCGAGCAAGGCTCGCTGCTCTTCCTGCA
GACAGCGGCCGCCGGCCTAGGCCTGCTCGGGGACACGGGGGACCCCGGCCCACCTGTCACCGCC
CCCGGGACTCGGGACGCCCCTGCTGCGCCCGCCCCGGTTGCCGCCGCCGCGGCCACCACCACCA
CCACCACCACCACCACCACCACCAGCAGCGCCGCTGGGGAGTCCTCCCAAGAGGACGACGAGGA
GGAGCTGGAGATGCCGGAGGAGGAGGCCGAGGAGGACGACGAGGATGACGATGAAGAGGACGAC
GACGACGAGGATGATGATGATGATGACGACGACGAGGACCTGCGCACCGACTCGGAGGAGTCGC
TGCCTGAGGCTGCGGGCGAGGCGGGCGCGCGGACCCCGCTGGCGGCCCTGGGTGGCCCCGGCCC
CGCGCCCACCGCCGCATCACCCTAGTGGCCGCGCCACCGCAGCCCCCTCTAGAACTGCTCTGTA
TGTGAACCCCTGTGTACAGACCCCGCTGGGCCGCCCCAGGGAGTGAGGCGCCCTGGCCCCGCCG
GTGCTTCCGGACCCCGAGTCCGTCTCAGGGCAGAGGCGGGGACCCCTCTGGTGCTCCGGGCCGT
CCGCGCCCTCCCCGCCCGCCCGAACGGGTGTTCAGGGAATAGCAGGTGCTGTGTCGGGGTGGCA
GCGCTGACCTGCGCTCCTCTCGGTACCCACACGCGAGGTCCTTGTTTGCTCAGGGGCTCCCCGC
GGGGGTCACCGGGTTGTGGGGGCGGCGGCTCCTGTAGCATCTGGTCCCCCCCCCCCCAATGCAG
CTAAGACCTCCCCCTGACTCGGGGGAGGGCCGGCCGAAGACGGTCAGCATCAGCACGGGTGACA
CTACAGGGACATGGAGGGAATCTCATGGAATCAGCAGCGAGCCGGCATCCCCGCCCCCAAGCTG
TGGTCCGGGTCTGGTGACACTCAGGCCCCAGCCTCCAGCGAATCGAGGCTGTGGCCCGAAGCAG
GCACAGCTGGTGGGGGCCTGGAGGCGAGGGTCTCAGCCACTCTGGTGCAAACAGGAAGGATGCG
ACTGGTTTTGGCTTTAATAATCAAAATGGAAACAAAAACCAAGAAAGTTGTACAGTATTTTTCC
TGTAAAGGTTATTATTCTACATAGAACAAAAAAAAAAAAGAGAAGGGGGGGAAATGGGAAAAAA
AGCAGGTGAGTGCGGGGAGCCTCGCCTCCCCTCCAGACCAGCCCTGGGATTGGGGACCCGAGTG
CAATTGCTCCTGTGGAATTGTTTTGCATTTATTTTAGAGGCCTCAGTTTGAGGCTTTGTCCTCA
CACTAGCACTGATGGGGGCTGCGTGATTCCAACTTTTAACTTGAATTTTGTAGAGACAAGGAAA
AAAAAAAGACTATTCTCTTGATACGAGTTTGTAGCTAATTTAACATTTGAGGGTTTTTCTGTTG
GTTATGCGTGTGGCTTTCTAGGGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTTGTTCCGGTTTCGTTTTATTATTTTATTTGGGATGCTATTGTGCA
GGTGCAGCCCACCCAGATTTGGTTCCTTCTCCAAAATACCCCTTTCCTGGAGGCAAGGAGGCCA
CTTAGACTTGGCACAGGACTCACCTGCAGACACTTACTTAGCCAGAGGCTGCTCCAGACTCTGG
CAGGGGCAGGCTGCCTGAGGCAGGGCTTGTGGGGTAAACCTGTGCACTGCGGGTTCTGACCAGT
GCCAGGCTGGAAGAAAACGGGCCAGCTCAGCAGGTGATGGAAGTCAGCGGAAGCCCCTCCCACG
GGTCTTCAAAGGGGGCGGTGTTCTCTCCATCTGACTCTGAGTGTGTGAACATGTGCGAGAGTGT
GCGAGCGCATGTGTGCGCGTGCGTGGGTGTGTGGGTGCGTGCGTGTGCGCACGCGCATGTGTGC
GTGTGTGCCCGAGTGTGTGTGTGAGCACGTCTCCTCTTGGCTGCCCACAACCAGAAAGCCAGGA
CCATCTGAACTGGAGAGGGAGCAGGGAGGGTACAGCGGAGAGATGAGAGTACCCAACAGGAAGC
ACGTTGATTCCTAAATGGCCCTGCCAGAGCCTCCATGCTGCTGCTGAGAGTTCGCCCAGATTCT
GACCTACCACAGGACTCTGCCTCTGTGGAAGGAGTTTTGTAAAGGAAAACAAACAAACAAGCAA
ACAGAATAAAAAACATTTTTCAATGTAGCAAAATCAAATAAAAAAAAAGGAAAAAAAAAAAAAG
AGCCGGAGCGTGCGCGTGCGCAGTCTAGCCTTTTGTAAGCCTCATATTGCACATTAGGACTATA
AGCCATTGCTAGCTCATCTTGAATTTTAATGTGTAATTTTTGTTTTATTTTCTTTCTGTGAGGA
AAACGATGCCTGATCCACCAATGCTCTTTTTAATGTTTTATAACTATGTATGTGTATATATATA
AATATAAAAGTAATATGTATGCACATATGTGTGTATATATCTATATGTATATACATATATAGAT
ATATAGAGATATATAGAGAGGTTTTGAGACAAAAAAAATGCAGAACATGAAACCGAACTGAACA
GCGCGTGCTCTGATTACTTGAATCTGGTCTCCTCGGCACCTGGTTATTAAGAACTGAATATTTT
TCCACTTGAATTTAGTGCTATTAGAAATTTAATATATGTGTTTTATTTATTTGATTTTTTTTTG
CATGACTGATGCAAGGTTTGACATTTTCACTCAATAAAAACTGGAAAAAAAAAC

hide sequence

RefSeq Acc Id:

XM_008764318 ⟹ XP_008762540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	164,527,083 - 164,676,535 (+)	NCBI
mRatBN7.2	5	159,243,965 - 159,393,935 (+)	NCBI
Rnor_6.0	5	165,625,119 - 165,777,053 (+)	NCBI

Sequence:

show sequence

TAATCACAGCGGGCGAGAGCGGAGACTGGGAGAGAAAAATCCGGGATCCGGCAACTTTGGTCGC
GCATGCGCGCCCGCGGCGCTCCATCCCAAACACACACACATTTTTCCCCGGACTTGGAAAGTCA
CCCAAAGCCGCCCCAAGTGCAGGCACACAGACCTTGCTGACGGAAGGCAGACCCTCTCCATCCT
GACTGCCTGAGCCACCCACTCCTCCTTCTCCGGGGGGGGGGACCCTGCAGCTCCCCAGTGGTGT
GCATTGGAATGGACTTTGGACCTTGGCCTCTTGGGATGCAAAGGATGAAGTGACCTCCCCAACT
GTGTTTGAGGAATCCCTAGGACCCTGTGAGAGTTTGGGACCAAGGAGCGGAGAATGGATCTTGG
AACAGCTGAAAGCACCCGGTGCACCGACCCACCTGCAGGCAAGCCTCCAATGGCAGCCAAGCGC
AAAGGCGGCCTGAAGCTCAACGCCATCTGTGCCAAGCTAAGCCGGCAGGTGGTCGTGGAGAAGG
GAGCAGAGGCTGGCTCCCAAGCTGAAGGCAGTCCACTACGTCCCCGGGACAGAGAGCGCAGTGG
CCCCGAGTCTGCGGCGACCCGGGCTCCCCGAAGTGAGGAAGACAAGAGGCGGGCAGTGATCGAG
AAGTGGGTCAACGGAGAGTACTGTGAGGAGCCCGCACCCACGCCAGTGTTGGGGCGCATCGTCC
GCGAGGGCTCGGAGCTGCCCCCAGAGGGCGTCTACATGGTCCAGCCGCAGGGCTGCAGTGACGA
AGAAGACCATGCAGAAGAGCCCTCAAAAGATAACAGTATCCTGGGGGAGAAGGACTCAGATGGT
ACAAAAGATGACAGCGGCCCCAGTGCCAAGCAAGCTTCAGGAGAAGCCTCCTCTCTGAGGGACT
ACGCTGCTTCCACCATGACCGAGTTCCTCGGCATGTTTGGCTACGACGACCAGAACACCAGGGA
TGAGCTGGCCAGAAAGATCAGCTTTGAGAAGCTGCATGCAGGCTCCACCCCTGAGGTGGTCGCG
TCTTCCATGCTGCCCTCTTCTGAGGACACCCTCAGCAAGCGGGCACGCTTCTCCAAATACGAGG
AATACATTCGGAAACTCAAGGCTGGCGAGCAACTTCCCTGGCCAGCCCATGGCAGCAAGGCTGA
GGACCGCGCGGGCAAGGAGGTGGTGGGCCCCTTGCCCAGCCTACGGCTACCCAGCAACACTGCC
CACCTGGAGACCAAGGCCACCATCTTGCCACTGCCATCCCACAGCAGTGTCCAGATGCAGAACC
TGGTAGCCCGTGCTTCTAAGTATGACTTCTTCATCCACAAACTGAAGACGGGTGAGAGCCTGAG
GCCCCAGAATGGAAGCACTTACAAGAAGCCATCCAAGTATGACCTGGAGAACGTCAAGTACCTG
CACCTCTTCAAACCCGGGGAAGGTAGCCCTGACATGGGCGGGGCCATTGCCTTCAAGACAGGCA
AGGTGGGGCGCCCCTCCAAGTACGACGTTCGGGGCATCCAGAAGCCGGGCACTACCAAGATTCC
GCCGGCCCCCAGCCTGGTTCCTACACCCCTCACCAATGTGCCCAGTGCTCCCAGCGCCCCTGGG
CCAGGACCCGAGCCACCTGCCTCCCTGTCCTTCAACACTCCCGAGTACCTGAAGTCAACCTTTT
CCAAAACAGACTCCATCACCACAGGAACTGTCTCCACTGTCAAGAACGGATTGCCCACAGATAA
ACCAGCTGTCACCGAAGATGTAAACATATACCAGAAATATATTGCCAGGTTCTCAGGAAGTCAG
CACTGCGGCCACATCCATTGCGCCTACCAGTACCGCGAGCACTATCACTGTCTGGACCCAGAGT
GCAACTACCAGAGGTTCACAAGCAAGCAGGACGTGATCCGACATTACAACATGCACAAGAAGCG
AGACAACTCCCTGCAGCACGGCTTCATGCGCTTCAGCCCGCTGGACGATTGCAGCGTCTACTAC
CACGGCTGCCACCTCAATGGGAAGAGCACCCACTACCACTGCATGCAGGTGGGATGTAACAAGG
TGTACACAAGTACCTCAGACGTCATGACCCATGAGAACTTCCACAAGAAGAACACCCAGCTCAT
CAATGACGGCTTCCAGCGCTTCCGGGCCACCGAGGACTGCGGCACGGCTGACTGTCAGTTCTAC
GGACAGAAGACCACACACTTCCACTGCAGGCGCCCCGGCTGCACGTTTACCTTCAAGAACAAGT
GTGACATCGAGAAGCACAAAAGCTACCACATCAAGGACGACGCCTACGCCAAGGATGGCTTCAA
GAAGTTCTACAAATATGAGGAGTGCAAATACGAGGGCTGCGTGTACAGCAAGGCCACCAACCAC
TTCCACTGCATCCGCGCCGGCTGCGGCTTCACCTTCACCTCCACCAGCCAGATGACCTCACACA
AGCGCAAGCACGAGCGCCGGCACATCCGGTCCTCCGGTGCCCTGGGGCTGCCGGCCTCCCTGCT
GGGCACCAAGGACACGGAACATGAGGAGTCCAGCAATGACGACCTTGTGGACTTCTCTGCCCTG
AGCAGCAAGAACTCCAGCCTGAGCGCCTCCCCCAACAGCCAGCAATCTTCCGCATCCCTGGCCG
CTGCGGCTGCTGCCACCACTGCCGAGGCTGTCCCAAGTGCCGCCAAGCCTCCCAATAGCAAGAT
GGCAGGCCTGCTGCCCCAGGGCCTGTCCGGTTCCATTCCCCTGGCCTTGGCCCTCTCTAACTCA
GGCCTGCCCACCACCACACCCTATTTCCCTCTCCTTCCTGGCCGTGGGAGCGCCTCACTGCCTG
TGGGATCTCCAGGGCTCCTGGGCTCCATGACCTCTGGGGCCACAACCTCGGCGACCCCCGACAT
GCCAGCTCTGATGGCTTCTGGAGCTGGGGACTCAGCCCCCACAGCTGCCACCTCTCTCTCGGTG
CCCCCTGCCTCCATCATGGAGAGGATCTCTGCGAGCAAAGGCCTCATCTCACCCATGATGGCTA
GACTGGCTGCGGCCGCCCTCAAGCCCTCTGCCACCTTTGACCCAGGAAGTGGGCAGCAGTCCAC
CCCCACCAAGTTCCCCCAGGCCCAGGTGAAGCAGGAGCCTGACAGTGCTGGCACCCCGGGTCCC
CACGAGGCCTCCCAAGACCGCAGTCTAGACCTGACTGTGAAGGAGCCCAGTAATGAATCAAATG
GCCACGCAGTCCCGGCAAATTCATCTCTTTTATCCTCGCTTATGAATAAGATGTCTCAGGGCAA
CCCCAGCCTTGGAAACTTGCTGAACATCAAGACAGAAGTGGAGGGGAGCCCCGCCGGGGAGCCC
TCGCCTTTCTTGGGCAAGGCCGTGAAGGCACTAGTTCAAGAGAAGCTGTCGGAGCCCTGGAAAG
TGTACCTCCGCAGGTTCGGCACCAAGGACTTCTGCGATGCCCAGTGTGACTTCCTCCACAAGGC
CCACTTCCATTGTGTGGTGGAGGAGTGCGGTGCGCTTTTCAGCACCCTGGACGGAGCCATTAAA
CATGCGAATTTCCACTTCCGGACGGAGGGAGGAACAGCAAAGGGAACCACAGAGGCTTCCTTCC
CAACCTCTGCTGCAGAGACCAAACCTCCCTTGGCACCCTCGTCCCCGCCAGCACCTCCTGGCAC
CATGGTCCCTGGATCTTCTCTGGAGGGGCCTGCTCCCAGCCCCGTCTCCGTGCCCTCCACCCCC
ACCCTGCTCGCCTGGAAGCAACTGGCTTCTACCATACCCCAGATGCCTCAGATTCCCTCATCAG
TGCCTCACCTGCCCACTTCGCCCCTGGCGACGACGTCTCTAGAGAGTGCCAAGCCTCAGGTCAA
ACCCGGGTTCCTCCAGTTCCAGGACAACGATCCATGCCTGGCGACGGATTGCAAGTACGCCAGC
AAGTTCCACTTCCACTGTCTCTTCGGGAACTGCAAGTACGTCTGTAAGACCTCAGGCAAGGCCG
AGTCCCACTGCTTGGACCACATCAACCCCAGCAACAGCCTGGTGAACGTGCGAGACCAGTTTGC
TTACTACTCTCTGCAGTGTCTGTGTCCCAACCAGCACTGTGAGTTCCGGATGCGTGGGCACTAC
CACTGCCTCCGGACGGGCTGCTACTTTGTCACCAACATCACCACCAAACTTCCGTGGCACATAA
AGAAGCACGAGAAAGCTGAGCGGCGGGCAGCCAACGGGTTCAAATACTTCACCAAGCGTGAGGA
GTGCGGAAGGCTAGGCTGCAAGTACAACCAGGTGAACAGTCACTTCCACTGCATCCGGGAAGGC
TGCCAGTTCTCTTTTCTCCTCAAGCACCAGATGACCTCGCATGCCCGGAAGCACATGCGGAGAA
TGCTGGGGAAGAACTTCGACCGAGTGCCCCCATCCCAGGGTCCCCCGAGCCTAATGGATGCCGA
GACAGACGAGGGCATGGACTACACGGGCTGCAGCCCCGGCGCGGCATCCTCGGAGTCTTCCACC
ATGGACCGCAGCTGCTCCAGCACCCCTGTGGGCAACGAAAGCACAGCCGCAGGCTGCCCGGTTC
CTCCTCCTCCTCCTCTTCCTCCTCCTGCTGCGGCTGGTGATGAGGCTGCTCGTGGGGCTGCACC
GCCCACCCTGACTCCATCCTTCCCACCGGCTGTGCTCCGGCCGCCCCTCCCTCCCCTCCCATGC
CTCTTCTCTCCCTCCTGTCTGTCATACTCTCTGCTCAGTACCACTCTCGGAGCCAGCCGGGGCC
TGGCCCACCCCATCAGCAGCCCGTCCAGCTTCCCGCCCATCACTGCCACTCCAACTCCAGTAAA
AAGGGACGCCCCCCTAGTTCAGGATGCTGCAGGGAACACCATCTCCATGCCGACAGCCTCAGGG
GCCAAAAAGCGCTTTTGGATCATCGAGGATATGTCTCCCTTTGGCAAGCGAAGGAAGACAGCCT
CGTCTCGGAAGATGCTGGACGAGGGCATGATGCTGGAGGGCTTCCGGCGCTTTGACCTCTACGA
GGACTGCAAGGATACCGCCTGCCAGTTCTCGCTCAAGGTCACCCACTACCACTGCACGCGGGAG
AACTGCGGCTACAAGTTCTGCGGGCGCACGCACATGTACAAGCACGCACAGCACCACGACCGCG
TGGACAACCTGGTGCTGGACGACTTCAAGCGCTTCAAGGCCTCGCTCAGCTGCCACTTCGCCGA
CTGCCCGTTCTCGGGCACCAGCACGCACTTCCACTGCCTGCGCTGCCGCTTCCGCTGCACAGAC
AGCACCAAGGTCACTGCGCACCGCAAGCACCACGGCAAGCAGGACGTGATCAGCGCCGCTGGCT
TCTGCCAGTTCAGCTCGAGCGCCGACTGCGCGGTGCCCGACTGCAAGTACAAGCTCAAGTGCTC
GCACTTCCACTGCACCTACCCGGGCTGCCGCCACACAGTGGTGGGCATGTCGCAGATGGACTCG
CACAAGCGCAAGCACGAGAAGCAGGAGCGAGGGGAGCCTCCCGCAGCCTCGCCGGGTGCGCCCG
TCAGCCTGGACGGCTCGCTCACGCTGGCCGCCGAGCAAGGCTCGCTGCTCTTCCTGCAGACAGC
GGCCGCCGGCCTAGGCCTGCTCGGGGACACGGGGGACCCCGGCCCACCTGTCACCGCCCCCGGG
ACTCGGGACGCCCCTGCTGCGCCCGCCCCGGTTGCCGCCGCCGCGGCCACCACCACCACCACCA
CCACCACCACCACCACCAGCAGCGCCGCTGGGGAGTCCTCCCAAGAGGACGACGAGGAGGAGCT
GGAGATGCCGGAGGAGGAGGCCGAGGAGGACGACGAGGATGACGATGAAGAGGACGACGACGAC
GAGGATGATGATGATGATGACGACGACGAGGACCTGCGCACCGACTCGGAGGAGTCGCTGCCTG
AGGCTGCGGGCGAGGCGGGCGCGCGGACCCCGCTGGCGGCCCTGGGTGGCCCCGGCCCCGCGCC
CACCGCCGCATCACCCTAGTGGCCGCGCCACCGCAGCCCCCTCTAGAACTGCTCTGTATGTGAA
CCCCTGTGTACAGACCCCGCTGGGCCGCCCCAGGGAGTGAGGCGCCCTGGCCCCGCCGGTGCTT
CCGGACCCCGAGTCCGTCTCAGGGCAGAGGCGGGGACCCCTCTGGTGCTCCGGGCCGTCCGCGC
CCTCCCCGCCCGCCCGAACGGGTGTTCAGGGAATAGCAGGTGCTGTGTCGGGGTGGCAGCGCTG
ACCTGCGCTCCTCTCGGTACCCACACGCGAGGTCCTTGTTTGCTCAGGGGCTCCCCGCGGGGGT
CACCGGGTTGTGGGGGCGGCGGCTCCTGTAGCATCTGGTCCCCCCCCCCCCAATGCAGCTAAGA
CCTCCCCCTGACTCGGGGGAGGGCCGGCCGAAGACGGTCAGCATCAGCACGGGTGACACTACAG
GGACATGGAGGGAATCTCATGGAATCAGCAGCGAGCCGGCATCCCCGCCCCCAAGCTGTGGTCC
GGGTCTGGTGACACTCAGGCCCCAGCCTCCAGCGAATCGAGGCTGTGGCCCGAAGCAGGCACAG
CTGGTGGGGGCCTGGAGGCGAGGGTCTCAGCCACTCTGGTGCAAACAGGAAGGATGCGACTGGT
TTTGGCTTTAATAATCAAAATGGAAACAAAAACCAAGAAAGTTGTACAGTATTTTTCCTGTAAA
GGTTATTATTCTACATAGAACAAAAAAAAAAAAGAGAAGGGGGGGAAATGGGAAAAAAAGCAGG
TGAGTGCGGGGAGCCTCGCCTCCCCTCCAGACCAGCCCTGGGATTGGGGACCCGAGTGCAATTG
CTCCTGTGGAATTGTTTTGCATTTATTTTAGAGGCCTCAGTTTGAGGCTTTGTCCTCACACTAG
CACTGATGGGGGCTGCGTGATTCCAACTTTTAACTTGAATTTTGTAGAGACAAGGAAAAAAAAA
AGACTATTCTCTTGATACGAGTTTGTAGCTAATTTAACATTTGAGGGTTTTTCTGTTGGTTATG
CGTGTGGCTTTCTAGGGCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTTGTTCCGGTTTCGTTTTATTATTTTATTTGGGATGCTATTGTGCAGGTGCA
GCCCACCCAGATTTGGTTCCTTCTCCAAAATACCCCTTTCCTGGAGGCAAGGAGGCCACTTAGA
CTTGGCACAGGACTCACCTGCAGACACTTACTTAGCCAGAGGCTGCTCCAGACTCTGGCAGGGG
CAGGCTGCCTGAGGCAGGGCTTGTGGGGTAAACCTGTGCACTGCGGGTTCTGACCAGTGCCAGG
CTGGAAGAAAACGGGCCAGCTCAGCAGGTGATGGAAGTCAGCGGAAGCCCCTCCCACGGGTCTT
CAAAGGGGGCGGTGTTCTCTCCATCTGACTCTGAGTGTGTGAACATGTGCGAGAGTGTGCGAGC
GCATGTGTGCGCGTGCGTGGGTGTGTGGGTGCGTGCGTGTGCGCACGCGCATGTGTGCGTGTGT
GCCCGAGTGTGTGTGTGAGCACGTCTCCTCTTGGCTGCCCACAACCAGAAAGCCAGGACCATCT
GAACTGGAGAGGGAGCAGGGAGGGTACAGCGGAGAGATGAGAGTACCCAACAGGAAGCACGTTG
ATTCCTAAATGGCCCTGCCAGAGCCTCCATGCTGCTGCTGAGAGTTCGCCCAGATTCTGACCTA
CCACAGGACTCTGCCTCTGTGGAAGGAGTTTTGTAAAGGAAAACAAACAAACAAGCAAACAGAA
TAAAAAACATTTTTCAATGTAGCAAAATCAAATAAAAAAAAAGGAAAAAAAAAAAAAGAGCCGG
AGCGTGCGCGTGCGCAGTCTAGCCTTTTGTAAGCCTCATATTGCACATTAGGACTATAAGCCAT
TGCTAGCTCATCTTGAATTTTAATGTGTAATTTTTGTTTTATTTTCTTTCTGTGAGGAAAACGA
TGCCTGATCCACCAATGCTCTTTTTAATGTTTTATAACTATGTATGTGTATATATATAAATATA
AAAGTAATATGTATGCACATATGTGTGTATATATCTATATGTATATACATATATAGATATATAG
AGATATATAGAGAGGTTTTGAGACAAAAAAAATGCAGAACATGAAACCGAACTGAACAGCGCGT
GCTCTGATTACTTGAATCTGGTCTCCTCGGCACCTGGTTATTAAGAACTGAATATTTTTCCACT
TGAATTTAGTGCTATTAGAAATTTAATATATGTGTTTTATTTATTTGATTTTTTTTTGCATGAC
TGATGCAAGGTTTGACATTTTCACTCAATAAAAACTGGAAAAAAAAAC

hide sequence

RefSeq Acc Id:

XM_017593879 ⟹ XP_017449368

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	164,527,276 - 164,676,535 (+)	NCBI
mRatBN7.2	5	159,244,129 - 159,393,935 (+)	NCBI
Rnor_6.0	5	165,625,284 - 165,777,053 (+)	NCBI

Sequence:

show sequence

CTCTTTCCACCGCGGCCCCCTCAAGCCCTCCACCTCTGCGGGCATATTGGGGCGCCTCCAGGCT
TCACCCCTGTCCCGGTGCAGCCCACTACCCCCGGGTTGCCGCTTGCAGCTGGGAGCGGGCGAAC
GAGCGAACGACCGAGCCAGTCAGCCTACGAGCGGCGGCTGCCACCCAACTCCGGCCGTACCGGA
GGCACACAGACCTTGCTGACGGAAGGCAGACCCTCTCCATCCTGACTGCCTGAGCCACCCACTC
CTCCTTCTCCGGGGGGGGGGACCCTGCAGCTCCCCAGTGGTGTGCATTGGAATGGACTTTGGAC
CTTGGCCTCTTGGGATGCAAAGGATGAAGTGACCTCCCCAACTGTGTTTGAGGAATCCCTAGGA
CCCTGTGAGAGTTTGGGACCAAGGAGCGGAGAATGGATCTTGGAACAGCTGAAAGCACCCGGTG
CACCGACCCACCTGCAGGCAAGCCTCCAATGGCAGCCAAGCGCAAAGGCGGCCTGAAGCTCAAC
GCCATCTGTGCCAAGCTAAGCCGGCAGGTGGTCGTGGAGAAGGGAGCAGAGGCTGGCTCCCAAG
CTGAAGGCAGTCCACTACGTCCCCGGGACAGAGAGCGCAGTGGCCCCGAGTCTGCGGCGACCCG
GGCTCCCCGAAGTGAGGAAGACAAGAGGCGGGCAGTGATCGAGAAGTGGGTCAACGGAGAGTAC
TGTGAGGAGCCCGCACCCACGCCAGTGTTGGGGCGCATCGTCCGCGAGGGCTCGGAGCTGCCCC
CAGAGGGCGTCTACATGGTCCAGCCGCAGGGCTGCAGTGACGAAGAAGACCATGCAGAAGAGCC
CTCAAAAGATAACAGTATCCTGGGGGAGAAGGACTCAGATGGTACAAAAGATGACAGCGGCCCC
AGTGCCAAGCAAGCTTCAGGAGAAGCCTCCTCTCTGAGGGACTACGCTGCTTCCACCATGACCG
AGTTCCTCGGCATGTTTGGCTACGACGACCAGAACACCAGGGATGAGCTGGCCAGAAAGATCAG
CTTTGAGAAGCTGCATGCAGGCTCCACCCCTGAGGTGGTCGCGTCTTCCATGCTGCCCTCTTCT
GAGGACACCCTCAGCAAGCGGGCACGCTTCTCCAAATACGAGGAATACATTCGGAAACTCAAGG
CTGGCGAGCAACTTCCCTGGCCAGCCCATGGCAGCAAGGCTGAGGACCGCGCGGGCAAGGAGGT
GGTGGGCCCCTTGCCCAGCCTACGGCTACCCAGCAACACTGCCCACCTGGAGACCAAGGCCACC
ATCTTGCCACTGCCATCCCACAGCAGTGTCCAGATGCAGAACCTGGTAGCCCGTGCTTCTAAGT
ATGACTTCTTCATCCACAAACTGAAGACGGGTGAGAGCCTGAGGCCCCAGAATGGAAGCACTTA
CAAGAAGCCATCCAAGTATGACCTGGAGAACGTCAAGTACCTGCACCTCTTCAAACCCGGGGAA
GGTAGCCCTGACATGGGCGGGGCCATTGCCTTCAAGACAGGCAAGGTGGGGCGCCCCTCCAAGT
ACGACGTTCGGGGCATCCAGAAGCCGGGCACTACCAAGATTCCGCCGGCCCCCAGCCTGGTTCC
TACACCCCTCACCAATGTGCCCAGTGCTCCCAGCGCCCCTGGGCCAGGACCCGAGCCACCTGCC
TCCCTGTCCTTCAACACTCCCGAGTACCTGAAGTCAACCTTTTCCAAAACAGACTCCATCACCA
CAGGAACTGTCTCCACTGTCAAGAACGGATTGCCCACAGATAAACCAGCTGTCACCGAAGATGT
AAACATATACCAGAAATATATTGCCAGGTTCTCAGGAAGTCAGCACTGCGGCCACATCCATTGC
GCCTACCAGTACCGCGAGCACTATCACTGTCTGGACCCAGAGTGCAACTACCAGAGGTTCACAA
GCAAGCAGGACGTGATCCGACATTACAACATGCACAAGAAGCGAGACAACTCCCTGCAGCACGG
CTTCATGCGCTTCAGCCCGCTGGACGATTGCAGCGTCTACTACCACGGCTGCCACCTCAATGGG
AAGAGCACCCACTACCACTGCATGCAGGTGGGATGTAACAAGGTGTACACAAGTACCTCAGACG
TCATGACCCATGAGAACTTCCACAAGAAGAACACCCAGCTCATCAATGACGGCTTCCAGCGCTT
CCGGGCCACCGAGGACTGCGGCACGGCTGACTGTCAGTTCTACGGACAGAAGACCACACACTTC
CACTGCAGGCGCCCCGGCTGCACGTTTACCTTCAAGAACAAGTGTGACATCGAGAAGCACAAAA
GCTACCACATCAAGGACGACGCCTACGCCAAGGATGGCTTCAAGAAGTTCTACAAATATGAGGA
GTGCAAATACGAGGGCTGCGTGTACAGCAAGGCCACCAACCACTTCCACTGCATCCGCGCCGGC
TGCGGCTTCACCTTCACCTCCACCAGCCAGATGACCTCACACAAGCGCAAGCACGAGCGCCGGC
ACATCCGGTCCTCCGGTGCCCTGGGGCTGCCGGCCTCCCTGCTGGGCACCAAGGACACGGAACA
TGAGGAGTCCAGCAATGACGACCTTGTGGACTTCTCTGCCCTGAGCAGCAAGAACTCCAGCCTG
AGCGCCTCCCCCAACAGCCAGCAATCTTCCGCATCCCTGGCCGCTGCGGCTGCTGCCACCACTG
CCGAGGCTGTCCCAAGTGCCGCCAAGCCTCCCAATAGCAAGATGGCAGGCCTGCTGCCCCAGGG
CCTGTCCGGTTCCATTCCCCTGGCCTTGGCCCTCTCTAACTCAGGCCTGCCCACCACCACACCC
TATTTCCCTCTCCTTCCTGGCCGTGGGAGCGCCTCACTGCCTGTGGGATCTCCAGGGCTCCTGG
GCTCCATGACCTCTGGGGCCACAACCTCGGCGACCCCCGACATGCCAGCTCTGATGGCTTCTGG
AGCTGGGGACTCAGCCCCCACAGCTGCCACCTCTCTCTCGGTGCCCCCTGCCTCCATCATGGAG
AGGATCTCTGCGAGCAAAGGCCTCATCTCACCCATGATGGCTAGACTGGCTGCGGCCGCCCTCA
AGCCCTCTGCCACCTTTGACCCAGGAAGTGGGCAGCAGTCCACCCCCACCAAGTTCCCCCAGGC
CCAGGTGAAGCAGGAGCCTGACAGTGCTGGCACCCCGGGTCCCCACGAGGCCTCCCAAGACCGC
AGTCTAGACCTGACTGTGAAGGAGCCCAGTAATGAATCAAATGGCCACGCAGTCCCGGCAAATT
CATCTCTTTTATCCTCGCTTATGAATAAGATGTCTCAGGGCAACCCCAGCCTTGGAAACTTGCT
GAACATCAAGACAGAAGTGGAGGGGAGCCCCGCCGGGGAGCCCTCGCCTTTCTTGGGCAAGGCC
GTGAAGGCACTAGTTCAAGAGAAGCTGTCGGAGCCCTGGAAAGTGTACCTCCGCAGGTTCGGCA
CCAAGGACTTCTGCGATGCCCAGTGTGACTTCCTCCACAAGGCCCACTTCCATTGTGTGGTGGA
GGAGTGCGGTGCGCTTTTCAGCACCCTGGACGGAGCCATTAAACATGCGAATTTCCACTTCCGG
ACGGAGGGAGGAACAGCAAAGGGAACCACAGAGGCTTCCTTCCCAACCTCTGCTGCAGAGACCA
AACCTCCCTTGGCACCCTCGTCCCCGCCAGCACCTCCTGGCACCATGGTCCCTGGATCTTCTCT
GGAGGGGCCTGCTCCCAGCCCCGTCTCCGTGCCCTCCACCCCCACCCTGCTCGCCTGGAAGCAA
CTGGCTTCTACCATACCCCAGATGCCTCAGATTCCCTCATCAGTGCCTCACCTGCCCACTTCGC
CCCTGGCGACGACGTCTCTAGAGAGTGCCAAGCCTCAGGTCAAACCCGGGTTCCTCCAGTTCCA
GGACAACGATCCATGCCTGGCGACGGATTGCAAGTACGCCAGCAAGTTCCACTTCCACTGTCTC
TTCGGGAACTGCAAGTACGTCTGTAAGACCTCAGGCAAGGCCGAGTCCCACTGCTTGGACCACA
TCAACCCCAGCAACAGCCTGGTGAACGTGCGAGACCAGTTTGCTTACTACTCTCTGCAGTGTCT
GTGTCCCAACCAGCACTGTGAGTTCCGGATGCGTGGGCACTACCACTGCCTCCGGACGGGCTGC
TACTTTGTCACCAACATCACCACCAAACTTCCGTGGCACATAAAGAAGCACGAGAAAGCTGAGC
GGCGGGCAGCCAACGGGTTCAAATACTTCACCAAGCGTGAGGAGTGCGGAAGGCTAGGCTGCAA
GTACAACCAGGTGAACAGTCACTTCCACTGCATCCGGGAAGGCTGCCAGTTCTCTTTTCTCCTC
AAGCACCAGATGACCTCGCATGCCCGGAAGCACATGCGGAGAATGCTGGGGAAGAACTTCGACC
GAGTGCCCCCATCCCAGGGTCCCCCGAGCCTAATGGATGCCGAGACAGACGAGGGCATGGACTA
CACGGGCTGCAGCCCCGGCGCGGCATCCTCGGAGTCTTCCACCATGGACCGCAGCTGCTCCAGC
ACCCCTGTGGGCAACGAAAGCACAGCCGCAGGCTGCCCGGTTCCTCCTCCTCCTCCTCTTCCTC
CTCCTGCTGCGGCTGGTGATGAGGCTGCTCGTGGGGCTGCACCGCCCACCCTGACTCCATCCTT
CCCACCGGCTGTGCTCCGGCCGCCCCTCCCTCCCCTCCCATGCCTCTTCTCTCCCTCCTGTCTG
TCATACTCTCTGCTCAGTACCACTCTCGGAGCCAGCCGGGGCCTGGCCCACCCCATCAGCAGCC
CGTCCAGCTTCCCGCCCATCACTGCCACTCCAACTCCAGTAAAAAGGGACGCCCCCCTAGTTCA
GGATGCTGCAGGGAACACCATCTCCATGCCGACAGCCTCAGGGGCCAAAAAGCGCTTTTGGATC
ATCGAGGATATGTCTCCCTTTGGCAAGCGAAGGAAGACAGCCTCGTCTCGGAAGATGCTGGACG
AGGGCATGATGCTGGAGGGCTTCCGGCGCTTTGACCTCTACGAGGACTGCAAGGATACCGCCTG
CCAGTTCTCGCTCAAGGTCACCCACTACCACTGCACGCGGGAGAACTGCGGCTACAAGTTCTGC
GGGCGCACGCACATGTACAAGCACGCACAGCACCACGACCGCGTGGACAACCTGGTGCTGGACG
ACTTCAAGCGCTTCAAGGCCTCGCTCAGCTGCCACTTCGCCGACTGCCCGTTCTCGGGCACCAG
CACGCACTTCCACTGCCTGCGCTGCCGCTTCCGCTGCACAGACAGCACCAAGGTCACTGCGCAC
CGCAAGCACCACGGCAAGCAGGACGTGATCAGCGCCGCTGGCTTCTGCCAGTTCAGCTCGAGCG
CCGACTGCGCGGTGCCCGACTGCAAGTACAAGCTCAAGTGCTCGCACTTCCACTGCACCTACCC
GGGCTGCCGCCACACAGTGGTGGGCATGTCGCAGATGGACTCGCACAAGCGCAAGCACGAGAAG
CAGGAGCGAGGGGAGCCTCCCGCAGCCTCGCCGGGTGCGCCCGTCAGCCTGGACGGCTCGCTCA
CGCTGGCCGCCGAGCAAGGCTCGCTGCTCTTCCTGCAGACAGCGGCCGCCGGCCTAGGCCTGCT
CGGGGACACGGGGGACCCCGGCCCACCTGTCACCGCCCCCGGGACTCGGGACGCCCCTGCTGCG
CCCGCCCCGGTTGCCGCCGCCGCGGCCACCACCACCACCACCACCACCACCACCACCACCAGCA
GCGCCGCTGGGGAGTCCTCCCAAGAGGACGACGAGGAGGAGCTGGAGATGCCGGAGGAGGAGGC
CGAGGAGGACGACGAGGATGACGATGAAGAGGACGACGACGACGAGGATGATGATGATGATGAC
GACGACGAGGACCTGCGCACCGACTCGGAGGAGTCGCTGCCTGAGGCTGCGGGCGAGGCGGGCG
CGCGGACCCCGCTGGCGGCCCTGGGTGGCCCCGGCCCCGCGCCCACCGCCGCATCACCCTAGTG
GCCGCGCCACCGCAGCCCCCTCTAGAACTGCTCTGTATGTGAACCCCTGTGTACAGACCCCGCT
GGGCCGCCCCAGGGAGTGAGGCGCCCTGGCCCCGCCGGTGCTTCCGGACCCCGAGTCCGTCTCA
GGGCAGAGGCGGGGACCCCTCTGGTGCTCCGGGCCGTCCGCGCCCTCCCCGCCCGCCCGAACGG
GTGTTCAGGGAATAGCAGGTGCTGTGTCGGGGTGGCAGCGCTGACCTGCGCTCCTCTCGGTACC
CACACGCGAGGTCCTTGTTTGCTCAGGGGCTCCCCGCGGGGGTCACCGGGTTGTGGGGGCGGCG
GCTCCTGTAGCATCTGGTCCCCCCCCCCCCAATGCAGCTAAGACCTCCCCCTGACTCGGGGGAG
GGCCGGCCGAAGACGGTCAGCATCAGCACGGGTGACACTACAGGGACATGGAGGGAATCTCATG
GAATCAGCAGCGAGCCGGCATCCCCGCCCCCAAGCTGTGGTCCGGGTCTGGTGACACTCAGGCC
CCAGCCTCCAGCGAATCGAGGCTGTGGCCCGAAGCAGGCACAGCTGGTGGGGGCCTGGAGGCGA
GGGTCTCAGCCACTCTGGTGCAAACAGGAAGGATGCGACTGGTTTTGGCTTTAATAATCAAAAT
GGAAACAAAAACCAAGAAAGTTGTACAGTATTTTTCCTGTAAAGGTTATTATTCTACATAGAAC
AAAAAAAAAAAAGAGAAGGGGGGGAAATGGGAAAAAAAGCAGGTGAGTGCGGGGAGCCTCGCCT
CCCCTCCAGACCAGCCCTGGGATTGGGGACCCGAGTGCAATTGCTCCTGTGGAATTGTTTTGCA
TTTATTTTAGAGGCCTCAGTTTGAGGCTTTGTCCTCACACTAGCACTGATGGGGGCTGCGTGAT
TCCAACTTTTAACTTGAATTTTGTAGAGACAAGGAAAAAAAAAAGACTATTCTCTTGATACGAG
TTTGTAGCTAATTTAACATTTGAGGGTTTTTCTGTTGGTTATGCGTGTGGCTTTCTAGGGCTTT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTCCGG
TTTCGTTTTATTATTTTATTTGGGATGCTATTGTGCAGGTGCAGCCCACCCAGATTTGGTTCCT
TCTCCAAAATACCCCTTTCCTGGAGGCAAGGAGGCCACTTAGACTTGGCACAGGACTCACCTGC
AGACACTTACTTAGCCAGAGGCTGCTCCAGACTCTGGCAGGGGCAGGCTGCCTGAGGCAGGGCT
TGTGGGGTAAACCTGTGCACTGCGGGTTCTGACCAGTGCCAGGCTGGAAGAAAACGGGCCAGCT
CAGCAGGTGATGGAAGTCAGCGGAAGCCCCTCCCACGGGTCTTCAAAGGGGGCGGTGTTCTCTC
CATCTGACTCTGAGTGTGTGAACATGTGCGAGAGTGTGCGAGCGCATGTGTGCGCGTGCGTGGG
TGTGTGGGTGCGTGCGTGTGCGCACGCGCATGTGTGCGTGTGTGCCCGAGTGTGTGTGTGAGCA
CGTCTCCTCTTGGCTGCCCACAACCAGAAAGCCAGGACCATCTGAACTGGAGAGGGAGCAGGGA
GGGTACAGCGGAGAGATGAGAGTACCCAACAGGAAGCACGTTGATTCCTAAATGGCCCTGCCAG
AGCCTCCATGCTGCTGCTGAGAGTTCGCCCAGATTCTGACCTACCACAGGACTCTGCCTCTGTG
GAAGGAGTTTTGTAAAGGAAAACAAACAAACAAGCAAACAGAATAAAAAACATTTTTCAATGTA
GCAAAATCAAATAAAAAAAAAGGAAAAAAAAAAAAAGAGCCGGAGCGTGCGCGTGCGCAGTCTA
GCCTTTTGTAAGCCTCATATTGCACATTAGGACTATAAGCCATTGCTAGCTCATCTTGAATTTT
AATGTGTAATTTTTGTTTTATTTTCTTTCTGTGAGGAAAACGATGCCTGATCCACCAATGCTCT
TTTTAATGTTTTATAACTATGTATGTGTATATATATAAATATAAAAGTAATATGTATGCACATA
TGTGTGTATATATCTATATGTATATACATATATAGATATATAGAGATATATAGAGAGGTTTTGA
GACAAAAAAAATGCAGAACATGAAACCGAACTGAACAGCGCGTGCTCTGATTACTTGAATCTGG
TCTCCTCGGCACCTGGTTATTAAGAACTGAATATTTTTCCACTTGAATTTAGTGCTATTAGAAA
TTTAATATATGTGTTTTATTTATTTGATTTTTTTTTGCATGACTGATGCAAGGTTTGACATTTT
CACTCAATAAAAACTGGAAAAAAAAAC

hide sequence

RefSeq Acc Id:

XM_017593880 ⟹ XP_017449369

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	164,623,536 - 164,676,535 (+)	NCBI
mRatBN7.2	5	159,330,274 - 159,391,609 (+)	NCBI
Rnor_6.0	5	165,724,075 - 165,777,053 (+)	NCBI

Sequence:

show sequence

CCTCCTGCCAAACTGTTACCCTGAGTGTTACCGTCAGGAGCAATGACATCAGGATTTTAAAACA
ACTTGTTATTCGGGGAGTAATCAGTTGCAATTAGGCATTAATTAAGTATTATGAAAGTTGATTA
TTTAAGTGAATTCGGCTTTCGACTCTCCGACTATGAGTTTGGGACCAAGGAGCGGAGAATGGAT
CTTGGAACAGCTGAAAGCACCCGGTGCACCGACCCACCTGCAGGCAAGCCTCCAATGGCAGCCA
AGCGCAAAGGCGGCCTGAAGCTCAACGCCATCTGTGCCAAGCTAAGCCGGCAGGTGGTCGTGGA
GAAGGGAGCAGAGGCTGGCTCCCAAGCTGAAGGCAGTCCACTACGTCCCCGGGACAGAGAGCGC
AGTGGCCCCGAGTCTGCGGCGACCCGGGCTCCCCGAAGTGAGGAAGACAAGAGGCGGGCAGTGA
TCGAGAAGTGGGTCAACGGAGAGTACTGTGAGGAGCCCGCACCCACGCCAGTGTTGGGGCGCAT
CGTCCGCGAGGGCTCGGAGCTGCCCCCAGAGGGCGTCTACATGGTCCAGCCGCAGGGCTGCAGT
GACGAAGAAGACCATGCAGAAGAGCCCTCAAAAGATAACAGTATCCTGGGGGAGAAGGACTCAG
ATGGTACAAAAGATGACAGCGGCCCCAGTGCCAAGCAAGCTTCAGGAGAAGCCTCCTCTCTGAG
GGACTACGCTGCTTCCACCATGACCGAGTTCCTCGGCATGTTTGGCTACGACGACCAGAACACC
AGGGATGAGCTGGCCAGAAAGATCAGCTTTGAGAAGCTGCATGCAGGCTCCACCCCTGAGGTGG
TCGCGTCTTCCATGCTGCCCTCTTCTGAGGACACCCTCAGCAAGCGGGCACGCTTCTCCAAATA
CGAGGAATACATTCGGAAACTCAAGGCTGGCGAGCAACTTCCCTGGCCAGCCCATGGCAGCAAG
GCTGAGGACCGCGCGGGCAAGGAGGTGGTGGGCCCCTTGCCCAGCCTACGGCTACCCAGCAACA
CTGCCCACCTGGAGACCAAGGCCACCATCTTGCCACTGCCATCCCACAGCAGTGTCCAGATGCA
GAACCTGGTAGCCCGTGCTTCTAAGTATGACTTCTTCATCCACAAACTGAAGACGGGTGAGAGC
CTGAGGCCCCAGAATGGAAGCACTTACAAGAAGCCATCCAAGTATGACCTGGAGAACGTCAAGT
ACCTGCACCTCTTCAAACCCGGGGAAGGTAGCCCTGACATGGGCGGGGCCATTGCCTTCAAGAC
AGGCAAGGTGGGGCGCCCCTCCAAGTACGACGTTCGGGGCATCCAGAAGCCGGGCACTACCAAG
ATTCCGCCGGCCCCCAGCCTGGTTCCTACACCCCTCACCAATGTGCCCAGTGCTCCCAGCGCCC
CTGGGCCAGGACCCGAGCCACCTGCCTCCCTGTCCTTCAACACTCCCGAGTACCTGAAGTCAAC
CTTTTCCAAAACAGACTCCATCACCACAGGAACTGTCTCCACTGTCAAGAACGGATTGCCCACA
GATAAACCAGCTGTCACCGAAGATGTAAACATATACCAGAAATATATTGCCAGGTTCTCAGGAA
GTCAGCACTGCGGCCACATCCATTGCGCCTACCAGTACCGCGAGCACTATCACTGTCTGGACCC
AGAGTGCAACTACCAGAGGTTCACAAGCAAGCAGGACGTGATCCGACATTACAACATGCACAAG
AAGCGAGACAACTCCCTGCAGCACGGCTTCATGCGCTTCAGCCCGCTGGACGATTGCAGCGTCT
ACTACCACGGCTGCCACCTCAATGGGAAGAGCACCCACTACCACTGCATGCAGGTGGGATGTAA
CAAGGTGTACACAAGTACCTCAGACGTCATGACCCATGAGAACTTCCACAAGAAGAACACCCAG
CTCATCAATGACGGCTTCCAGCGCTTCCGGGCCACCGAGGACTGCGGCACGGCTGACTGTCAGT
TCTACGGACAGAAGACCACACACTTCCACTGCAGGCGCCCCGGCTGCACGTTTACCTTCAAGAA
CAAGTGTGACATCGAGAAGCACAAAAGCTACCACATCAAGGACGACGCCTACGCCAAGGATGGC
TTCAAGAAGTTCTACAAATATGAGGAGTGCAAATACGAGGGCTGCGTGTACAGCAAGGCCACCA
ACCACTTCCACTGCATCCGCGCCGGCTGCGGCTTCACCTTCACCTCCACCAGCCAGATGACCTC
ACACAAGCGCAAGCACGAGCGCCGGCACATCCGGTCCTCCGGTGCCCTGGGGCTGCCGGCCTCC
CTGCTGGGCACCAAGGACACGGAACATGAGGAGTCCAGCAATGACGACCTTGTGGACTTCTCTG
CCCTGAGCAGCAAGAACTCCAGCCTGAGCGCCTCCCCCAACAGCCAGCAATCTTCCGCATCCCT
GGCCGCTGCGGCTGCTGCCACCACTGCCGAGGCTGTCCCAAGTGCCGCCAAGCCTCCCAATAGC
AAGATGGCAGGCCTGCTGCCCCAGGGCCTGTCCGGTTCCATTCCCCTGGCCTTGGCCCTCTCTA
ACTCAGGCCTGCCCACCACCACACCCTATTTCCCTCTCCTTCCTGGCCGTGGGAGCGCCTCACT
GCCTGTGGGATCTCCAGGGCTCCTGGGCTCCATGACCTCTGGGGCCACAACCTCGGCGACCCCC
GACATGCCAGCTCTGATGGCTTCTGGAGCTGGGGACTCAGCCCCCACAGCTGCCACCTCTCTCT
CGGTGCCCCCTGCCTCCATCATGGAGAGGATCTCTGCGAGCAAAGGCCTCATCTCACCCATGAT
GGCTAGACTGGCTGCGGCCGCCCTCAAGCCCTCTGCCACCTTTGACCCAGGAAGTGGGCAGCAG
TCCACCCCCACCAAGTTCCCCCAGGCCCAGGTGAAGCAGGAGCCTGACAGTGCTGGCACCCCGG
GTCCCCACGAGGCCTCCCAAGACCGCAGTCTAGACCTGACTGTGAAGGAGCCCAGTAATGAATC
AAATGGCCACGCAGTCCCGGCAAATTCATCTCTTTTATCCTCGCTTATGAATAAGATGTCTCAG
GGCAACCCCAGCCTTGGAAACTTGCTGAACATCAAGACAGAAGTGGAGGGGAGCCCCGCCGGGG
AGCCCTCGCCTTTCTTGGGCAAGGCCGTGAAGGCACTAGTTCAAGAGAAGCTGTCGGAGCCCTG
GAAAGTGTACCTCCGCAGGTTCGGCACCAAGGACTTCTGCGATGCCCAGTGTGACTTCCTCCAC
AAGGCCCACTTCCATTGTGTGGTGGAGGAGTGCGGTGCGCTTTTCAGCACCCTGGACGGAGCCA
TTAAACATGCGAATTTCCACTTCCGGACGGAGGGAGGAACAGCAAAGGGAACCACAGAGGCTTC
CTTCCCAACCTCTGCTGCAGAGACCAAACCTCCCTTGGCACCCTCGTCCCCGCCAGCACCTCCT
GGCACCATGGTCCCTGGATCTTCTCTGGAGGGGCCTGCTCCCAGCCCCGTCTCCGTGCCCTCCA
CCCCCACCCTGCTCGCCTGGAAGCAACTGGCTTCTACCATACCCCAGATGCCTCAGATTCCCTC
ATCAGTGCCTCACCTGCCCACTTCGCCCCTGGCGACGACGTCTCTAGAGAGTGCCAAGCCTCAG
GTCAAACCCGGGTTCCTCCAGTTCCAGGACAACGATCCATGCCTGGCGACGGATTGCAAGTACG
CCAGCAAGTTCCACTTCCACTGTCTCTTCGGGAACTGCAAGTACGTCTGTAAGACCTCAGGCAA
GGCCGAGTCCCACTGCTTGGACCACATCAACCCCAGCAACAGCCTGGTGAACGTGCGAGACCAG
TTTGCTTACTACTCTCTGCAGTGTCTGTGTCCCAACCAGCACTGTGAGTTCCGGATGCGTGGGC
ACTACCACTGCCTCCGGACGGGCTGCTACTTTGTCACCAACATCACCACCAAACTTCCGTGGCA
CATAAAGAAGCACGAGAAAGCTGAGCGGCGGGCAGCCAACGGGTTCAAATACTTCACCAAGCGT
GAGGAGTGCGGAAGGCTAGGCTGCAAGTACAACCAGGTGAACAGTCACTTCCACTGCATCCGGG
AAGGCTGCCAGTTCTCTTTTCTCCTCAAGCACCAGATGACCTCGCATGCCCGGAAGCACATGCG
GAGAATGCTGGGGAAGAACTTCGACCGAGTGCCCCCATCCCAGGGTCCCCCGAGCCTAATGGAT
GCCGAGACAGACGAGGGCATGGACTACACGGGCTGCAGCCCCGGCGCGGCATCCTCGGAGTCTT
CCACCATGGACCGCAGCTGCTCCAGCACCCCTGTGGGCAACGAAAGCACAGCCGCAGGGAACAC
CATCTCCATGCCGACAGCCTCAGGGGCCAAAAAGCGCTTTTGGATCATCGAGGATATGTCTCCC
TTTGGCAAGCGAAGGAAGACAGCCTCGTCTCGGAAGATGCTGGACGAGGGCATGATGCTGGAGG
GCTTCCGGCGCTTTGACCTCTACGAGGACTGCAAGGATACCGCCTGCCAGTTCTCGCTCAAGGT
CACCCACTACCACTGCACGCGGGAGAACTGCGGCTACAAGTTCTGCGGGCGCACGCACATGTAC
AAGCACGCACAGCACCACGACCGCGTGGACAACCTGGTGCTGGACGACTTCAAGCGCTTCAAGG
CCTCGCTCAGCTGCCACTTCGCCGACTGCCCGTTCTCGGGCACCAGCACGCACTTCCACTGCCT
GCGCTGCCGCTTCCGCTGCACAGACAGCACCAAGGTCACTGCGCACCGCAAGCACCACGGCAAG
CAGGACGTGATCAGCGCCGCTGGCTTCTGCCAGTTCAGCTCGAGCGCCGACTGCGCGGTGCCCG
ACTGCAAGTACAAGCTCAAGTGCTCGCACTTCCACTGCACCTACCCGGGCTGCCGCCACACAGT
GGTGGGCATGTCGCAGATGGACTCGCACAAGCGCAAGCACGAGAAGCAGGAGCGAGGGGAGCCT
CCCGCAGCCTCGCCGGGTGCGCCCGTCAGCCTGGACGGCTCGCTCACGCTGGCCGCCGAGCAAG
GCTCGCTGCTCTTCCTGCAGACAGCGGCCGCCGGCCTAGGCCTGCTCGGGGACACGGGGGACCC
CGGCCCACCTGTCACCGCCCCCGGGACTCGGGACGCCCCTGCTGCGCCCGCCCCGGTTGCCGCC
GCCGCGGCCACCACCACCACCACCACCACCACCACCACCACCAGCAGCGCCGCTGGGGAGTCCT
CCCAAGAGGACGACGAGGAGGAGCTGGAGATGCCGGAGGAGGAGGCCGAGGAGGACGACGAGGA
TGACGATGAAGAGGACGACGACGACGAGGATGATGATGATGATGACGACGACGAGGACCTGCGC
ACCGACTCGGAGGAGTCGCTGCCTGAGGCTGCGGGCGAGGCGGGCGCGCGGACCCCGCTGGCGG
CCCTGGGTGGCCCCGGCCCCGCGCCCACCGCCGCATCACCCTAGTGGCCGCGCCACCGCAGCCC
CCTCTAGAACTGCTCTGTATGTGAACCCCTGTGTACAGACCCCGCTGGGCCGCCCCAGGGAGTG
AGGCGCCCTGGCCCCGCCGGTGCTTCCGGACCCCGAGTCCGTCTCAGGGCAGAGGCGGGGACCC
CTCTGGTGCTCCGGGCCGTCCGCGCCCTCCCCGCCCGCCCGAACGGGTGTTCAGGGAATAGCAG
GTGCTGTGTCGGGGTGGCAGCGCTGACCTGCGCTCCTCTCGGTACCCACACGCGAGGTCCTTGT
TTGCTCAGGGGCTCCCCGCGGGGGTCACCGGGTTGTGGGGGCGGCGGCTCCTGTAGCATCTGGT
CCCCCCCCCCCCAATGCAGCTAAGACCTCCCCCTGACTCGGGGGAGGGCCGGCCGAAGACGGTC
AGCATCAGCACGGGTGACACTACAGGGACATGGAGGGAATCTCATGGAATCAGCAGCGAGCCGG
CATCCCCGCCCCCAAGCTGTGGTCCGGGTCTGGTGACACTCAGGCCCCAGCCTCCAGCGAATCG
AGGCTGTGGCCCGAAGCAGGCACAGCTGGTGGGGGCCTGGAGGCGAGGGTCTCAGCCACTCTGG
TGCAAACAGGAAGGATGCGACTGGTTTTGGCTTTAATAATCAAAATGGAAACAAAAACCAAGAA
AGTTGTACAGTATTTTTCCTGTAAAGGTTATTATTCTACATAGAACAAAAAAAAAAAAGAGAAG
GGGGGGAAATGGGAAAAAAAGCAGGTGAGTGCGGGGAGCCTCGCCTCCCCTCCAGACCAGCCCT
GGGATTGGGGACCCGAGTGCAATTGCTCCTGTGGAATTGTTTTGCATTTATTTTAGAGGCCTCA
GTTTGAGGCTTTGTCCTCACACTAGCACTGATGGGGGCTGCGTGATTCCAACTTTTAACTTGAA
TTTTGTAGAGACAAGGAAAAAAAAAAGACTATTCTCTTGATACGAGTTTGTAGCTAATTTAACA
TTTGAGGGTTTTTCTGTTGGTTATGCGTGTGGCTTTCTAGGGCTTTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTTCCGGTTTCGTTTTATTATTTTA
TTTGGGATGCTATTGTGCAGGTGCAGCCCACCCAGATTTGGTTCCTTCTCCAAAATACCCCTTT
CCTGGAGGCAAGGAGGCCACTTAGACTTGGCACAGGACTCACCTGCAGACACTTACTTAGCCAG
AGGCTGCTCCAGACTCTGGCAGGGGCAGGCTGCCTGAGGCAGGGCTTGTGGGGTAAACCTGTGC
ACTGCGGGTTCTGACCAGTGCCAGGCTGGAAGAAAACGGGCCAGCTCAGCAGGTGATGGAAGTC
AGCGGAAGCCCCTCCCACGGGTCTTCAAAGGGGGCGGTGTTCTCTCCATCTGACTCTGAGTGTG
TGAACATGTGCGAGAGTGTGCGAGCGCATGTGTGCGCGTGCGTGGGTGTGTGGGTGCGTGCGTG
TGCGCACGCGCATGTGTGCGTGTGTGCCCGAGTGTGTGTGTGAGCACGTCTCCTCTTGGCTGCC
CACAACCAGAAAGCCAGGACCATCTGAACTGGAGAGGGAGCAGGGAGGGTACAGCGGAGAGATG
AGAGTACCCAACAGGAAGCACGTTGATTCCTAAATGGCCCTGCCAGAGCCTCCATGCTGCTGCT
GAGAGTTCGCCCAGATTCTGACCTACCACAGGACTCTGCCTCTGTGGAAGGAGTTTTGTAAAGG
AAAACAAACAAACAAGCAAACAGAATAAAAAACATTTTTCAATGTAGCAAAATCAAATAAAAAA
AAAGGAAAAAAAAAAAAAGAGCCGGAGCGTGCGCGTGCGCAGTCTAGCCTTTTGTAAGCCTCAT
ATTGCACATTAGGACTATAAGCCATTGCTAGCTCATCTTGAATTTTAATGTGTAATTTTTGTTT
TATTTTCTTTCTGTGAGGAAAACGATGCCTGATCCACCAATGCTCTTTTTAATGTTTTATAACT
ATGTATGTGTATATATATAAATATAAAAGTAATATGTATGCACATATGTGTGTATATATCTATA
TGTATATACATATATAGATATATAGAGATATATAGAGAGGTTTTGAGACAAAAAAAATGCAGAA
CATGAAACCGAACTGAACAGCGCGTGCTCTGATTACTTGAATCTGGTCTCCTCGGCACCTGGTT
ATTAAGAACTGAATATTTTTCCACTTGAATTTAGTGCTATTAGAAATTTAATATATGTGTTTTA
TTTATTTGATTTTTTTTTGCATGACTGATGCAAGGTTTGACATTTTCACTCAATAAAAACTGGA
AAAAAAAAC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001414597	(Get FASTA)	NCBI Sequence Viewer
	XP_008762539	(Get FASTA)	NCBI Sequence Viewer
	XP_008762540	(Get FASTA)	NCBI Sequence Viewer
	XP_017449368	(Get FASTA)	NCBI Sequence Viewer
	XP_017449369	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000018000.7
	ENSRNOP00000079561
	ENSRNOP00000079561.1
	ENSRNOP00000081497
	ENSRNOP00000081497.1
	ENSRNOP00000091853
	ENSRNOP00000091853.1

RefSeq Acc Id:	XP_008762540 ⟸ XM_008764318
- Peptide Label:	isoform X2
- UniProtKB:	A6IU91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLGTAESTRCTDPPAGKPPMAAKRKGGLKLNAICAKLSRQVVVEKGAEAGSQAEGSPLRPRDR ERSGPESAATRAPRSEEDKRRAVIEKWVNGEYCEEPAPTPVLGRIVREGSELPPEGVYMVQPQG CSDEEDHAEEPSKDNSILGEKDSDGTKDDSGPSAKQASGEASSLRDYAASTMTEFLGMFGYDDQ NTRDELARKISFEKLHAGSTPEVVASSMLPSSEDTLSKRARFSKYEEYIRKLKAGEQLPWPAHG SKAEDRAGKEVVGPLPSLRLPSNTAHLETKATILPLPSHSSVQMQNLVARASKYDFFIHKLKTG ESLRPQNGSTYKKPSKYDLENVKYLHLFKPGEGSPDMGGAIAFKTGKVGRPSKYDVRGIQKPGT TKIPPAPSLVPTPLTNVPSAPSAPGPGPEPPASLSFNTPEYLKSTFSKTDSITTGTVSTVKNGL PTDKPAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHYHCLDPECNYQRFTSKQDVIRHYNM HKKRDNSLQHGFMRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNKVYTSTSDVMTHENFHKKN TQLINDGFQRFRATEDCGTADCQFYGQKTTHFHCRRPGCTFTFKNKCDIEKHKSYHIKDDAYAK DGFKKFYKYEECKYEGCVYSKATNHFHCIRAGCGFTFTSTSQMTSHKRKHERRHIRSSGALGLP ASLLGTKDTEHEESSNDDLVDFSALSSKNSSLSASPNSQQSSASLAAAAAATTAEAVPSAAKPP NSKMAGLLPQGLSGSIPLALALSNSGLPTTTPYFPLLPGRGSASLPVGSPGLLGSMTSGATTSA TPDMPALMASGAGDSAPTAATSLSVPPASIMERISASKGLISPMMARLAAAALKPSATFDPGSG QQSTPTKFPQAQVKQEPDSAGTPGPHEASQDRSLDLTVKEPSNESNGHAVPANSSLLSSLMNKM SQGNPSLGNLLNIKTEVEGSPAGEPSPFLGKAVKALVQEKLSEPWKVYLRRFGTKDFCDAQCDF LHKAHFHCVVEECGALFSTLDGAIKHANFHFRTEGGTAKGTTEASFPTSAAETKPPLAPSSPPA PPGTMVPGSSLEGPAPSPVSVPSTPTLLAWKQLASTIPQMPQIPSSVPHLPTSPLATTSLESAK PQVKPGFLQFQDNDPCLATDCKYASKFHFHCLFGNCKYVCKTSGKAESHCLDHINPSNSLVNVR DQFAYYSLQCLCPNQHCEFRMRGHYHCLRTGCYFVTNITTKLPWHIKKHEKAERRAANGFKYFT KREECGRLGCKYNQVNSHFHCIREGCQFSFLLKHQMTSHARKHMRRMLGKNFDRVPPSQGPPSL MDAETDEGMDYTGCSPGAASSESSTMDRSCSSTPVGNESTAAGCPVPPPPPLPPPAAAGDEAAR GAAPPTLTPSFPPAVLRPPLPPLPCLFSPSCLSYSLLSTTLGASRGLAHPISSPSSFPPITATP TPVKRDAPLVQDAAGNTISMPTASGAKKRFWIIEDMSPFGKRRKTASSRKMLDEGMMLEGFRRF DLYEDCKDTACQFSLKVTHYHCTRENCGYKFCGRTHMYKHAQHHDRVDNLVLDDFKRFKASLSC HFADCPFSGTSTHFHCLRCRFRCTDSTKVTAHRKHHGKQDVISAAGFCQFSSSADCAVPDCKYK LKCSHFHCTYPGCRHTVVGMSQMDSHKRKHEKQERGEPPAASPGAPVSLDGSLTLAAEQGSLLF LQTAAAGLGLLGDTGDPGPPVTAPGTRDAPAAPAPVAAAAATTTTTTTTTTTSSAAGESSQEDD EEELEMPEEEAEEDDEDDDEEDDDDEDDDDDDDDEDLRTDSEESLPEAAGEAGARTPLAALGGP GPAPTAASP hide sequence

RefSeq Acc Id:	XP_008762539 ⟸ XM_008764317
- Peptide Label:	isoform X1
- UniProtKB:	A6IU91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKVDYLSEFGFRLSDYEFGTKERRMDLGTAESTRCTDPPAGKPPMAAKRKGGLKLNAICAKLSR QVVVEKGAEAGSQAEGSPLRPRDRERSGPESAATRAPRSEEDKRRAVIEKWVNGEYCEEPAPTP VLGRIVREGSELPPEGVYMVQPQGCSDEEDHAEEPSKDNSILGEKDSDGTKDDSGPSAKQASGE ASSLRDYAASTMTEFLGMFGYDDQNTRDELARKISFEKLHAGSTPEVVASSMLPSSEDTLSKRA RFSKYEEYIRKLKAGEQLPWPAHGSKAEDRAGKEVVGPLPSLRLPSNTAHLETKATILPLPSHS SVQMQNLVARASKYDFFIHKLKTGESLRPQNGSTYKKPSKYDLENVKYLHLFKPGEGSPDMGGA IAFKTGKVGRPSKYDVRGIQKPGTTKIPPAPSLVPTPLTNVPSAPSAPGPGPEPPASLSFNTPE YLKSTFSKTDSITTGTVSTVKNGLPTDKPAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHY HCLDPECNYQRFTSKQDVIRHYNMHKKRDNSLQHGFMRFSPLDDCSVYYHGCHLNGKSTHYHCM QVGCNKVYTSTSDVMTHENFHKKNTQLINDGFQRFRATEDCGTADCQFYGQKTTHFHCRRPGCT FTFKNKCDIEKHKSYHIKDDAYAKDGFKKFYKYEECKYEGCVYSKATNHFHCIRAGCGFTFTST SQMTSHKRKHERRHIRSSGALGLPASLLGTKDTEHEESSNDDLVDFSALSSKNSSLSASPNSQQ SSASLAAAAAATTAEAVPSAAKPPNSKMAGLLPQGLSGSIPLALALSNSGLPTTTPYFPLLPGR GSASLPVGSPGLLGSMTSGATTSATPDMPALMASGAGDSAPTAATSLSVPPASIMERISASKGL ISPMMARLAAAALKPSATFDPGSGQQSTPTKFPQAQVKQEPDSAGTPGPHEASQDRSLDLTVKE PSNESNGHAVPANSSLLSSLMNKMSQGNPSLGNLLNIKTEVEGSPAGEPSPFLGKAVKALVQEK LSEPWKVYLRRFGTKDFCDAQCDFLHKAHFHCVVEECGALFSTLDGAIKHANFHFRTEGGTAKG TTEASFPTSAAETKPPLAPSSPPAPPGTMVPGSSLEGPAPSPVSVPSTPTLLAWKQLASTIPQM PQIPSSVPHLPTSPLATTSLESAKPQVKPGFLQFQDNDPCLATDCKYASKFHFHCLFGNCKYVC KTSGKAESHCLDHINPSNSLVNVRDQFAYYSLQCLCPNQHCEFRMRGHYHCLRTGCYFVTNITT KLPWHIKKHEKAERRAANGFKYFTKREECGRLGCKYNQVNSHFHCIREGCQFSFLLKHQMTSHA RKHMRRMLGKNFDRVPPSQGPPSLMDAETDEGMDYTGCSPGAASSESSTMDRSCSSTPVGNEST AAGCPVPPPPPLPPPAAAGDEAARGAAPPTLTPSFPPAVLRPPLPPLPCLFSPSCLSYSLLSTT LGASRGLAHPISSPSSFPPITATPTPVKRDAPLVQDAAGNTISMPTASGAKKRFWIIEDMSPFG KRRKTASSRKMLDEGMMLEGFRRFDLYEDCKDTACQFSLKVTHYHCTRENCGYKFCGRTHMYKH AQHHDRVDNLVLDDFKRFKASLSCHFADCPFSGTSTHFHCLRCRFRCTDSTKVTAHRKHHGKQD VISAAGFCQFSSSADCAVPDCKYKLKCSHFHCTYPGCRHTVVGMSQMDSHKRKHEKQERGEPPA ASPGAPVSLDGSLTLAAEQGSLLFLQTAAAGLGLLGDTGDPGPPVTAPGTRDAPAAPAPVAAAA ATTTTTTTTTTTSSAAGESSQEDDEEELEMPEEEAEEDDEDDDEEDDDDEDDDDDDDDEDLRTD SEESLPEAAGEAGARTPLAALGGPGPAPTAASP hide sequence

RefSeq Acc Id:	XP_017449368 ⟸ XM_017593879
- Peptide Label:	isoform X2
- UniProtKB:	A6IU91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLGTAESTRCTDPPAGKPPMAAKRKGGLKLNAICAKLSRQVVVEKGAEAGSQAEGSPLRPRDR ERSGPESAATRAPRSEEDKRRAVIEKWVNGEYCEEPAPTPVLGRIVREGSELPPEGVYMVQPQG CSDEEDHAEEPSKDNSILGEKDSDGTKDDSGPSAKQASGEASSLRDYAASTMTEFLGMFGYDDQ NTRDELARKISFEKLHAGSTPEVVASSMLPSSEDTLSKRARFSKYEEYIRKLKAGEQLPWPAHG SKAEDRAGKEVVGPLPSLRLPSNTAHLETKATILPLPSHSSVQMQNLVARASKYDFFIHKLKTG ESLRPQNGSTYKKPSKYDLENVKYLHLFKPGEGSPDMGGAIAFKTGKVGRPSKYDVRGIQKPGT TKIPPAPSLVPTPLTNVPSAPSAPGPGPEPPASLSFNTPEYLKSTFSKTDSITTGTVSTVKNGL PTDKPAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHYHCLDPECNYQRFTSKQDVIRHYNM HKKRDNSLQHGFMRFSPLDDCSVYYHGCHLNGKSTHYHCMQVGCNKVYTSTSDVMTHENFHKKN TQLINDGFQRFRATEDCGTADCQFYGQKTTHFHCRRPGCTFTFKNKCDIEKHKSYHIKDDAYAK DGFKKFYKYEECKYEGCVYSKATNHFHCIRAGCGFTFTSTSQMTSHKRKHERRHIRSSGALGLP ASLLGTKDTEHEESSNDDLVDFSALSSKNSSLSASPNSQQSSASLAAAAAATTAEAVPSAAKPP NSKMAGLLPQGLSGSIPLALALSNSGLPTTTPYFPLLPGRGSASLPVGSPGLLGSMTSGATTSA TPDMPALMASGAGDSAPTAATSLSVPPASIMERISASKGLISPMMARLAAAALKPSATFDPGSG QQSTPTKFPQAQVKQEPDSAGTPGPHEASQDRSLDLTVKEPSNESNGHAVPANSSLLSSLMNKM SQGNPSLGNLLNIKTEVEGSPAGEPSPFLGKAVKALVQEKLSEPWKVYLRRFGTKDFCDAQCDF LHKAHFHCVVEECGALFSTLDGAIKHANFHFRTEGGTAKGTTEASFPTSAAETKPPLAPSSPPA PPGTMVPGSSLEGPAPSPVSVPSTPTLLAWKQLASTIPQMPQIPSSVPHLPTSPLATTSLESAK PQVKPGFLQFQDNDPCLATDCKYASKFHFHCLFGNCKYVCKTSGKAESHCLDHINPSNSLVNVR DQFAYYSLQCLCPNQHCEFRMRGHYHCLRTGCYFVTNITTKLPWHIKKHEKAERRAANGFKYFT KREECGRLGCKYNQVNSHFHCIREGCQFSFLLKHQMTSHARKHMRRMLGKNFDRVPPSQGPPSL MDAETDEGMDYTGCSPGAASSESSTMDRSCSSTPVGNESTAAGCPVPPPPPLPPPAAAGDEAAR GAAPPTLTPSFPPAVLRPPLPPLPCLFSPSCLSYSLLSTTLGASRGLAHPISSPSSFPPITATP TPVKRDAPLVQDAAGNTISMPTASGAKKRFWIIEDMSPFGKRRKTASSRKMLDEGMMLEGFRRF DLYEDCKDTACQFSLKVTHYHCTRENCGYKFCGRTHMYKHAQHHDRVDNLVLDDFKRFKASLSC HFADCPFSGTSTHFHCLRCRFRCTDSTKVTAHRKHHGKQDVISAAGFCQFSSSADCAVPDCKYK LKCSHFHCTYPGCRHTVVGMSQMDSHKRKHEKQERGEPPAASPGAPVSLDGSLTLAAEQGSLLF LQTAAAGLGLLGDTGDPGPPVTAPGTRDAPAAPAPVAAAAATTTTTTTTTTTSSAAGESSQEDD EEELEMPEEEAEEDDEDDDEEDDDDEDDDDDDDDEDLRTDSEESLPEAAGEAGARTPLAALGGP GPAPTAASP hide sequence

RefSeq Acc Id:	XP_017449369 ⟸ XM_017593880
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AGF7 (UniProtKB/TrEMBL), A6IU91 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKVDYLSEFGFRLSDYEFGTKERRMDLGTAESTRCTDPPAGKPPMAAKRKGGLKLNAICAKLSR QVVVEKGAEAGSQAEGSPLRPRDRERSGPESAATRAPRSEEDKRRAVIEKWVNGEYCEEPAPTP VLGRIVREGSELPPEGVYMVQPQGCSDEEDHAEEPSKDNSILGEKDSDGTKDDSGPSAKQASGE ASSLRDYAASTMTEFLGMFGYDDQNTRDELARKISFEKLHAGSTPEVVASSMLPSSEDTLSKRA RFSKYEEYIRKLKAGEQLPWPAHGSKAEDRAGKEVVGPLPSLRLPSNTAHLETKATILPLPSHS SVQMQNLVARASKYDFFIHKLKTGESLRPQNGSTYKKPSKYDLENVKYLHLFKPGEGSPDMGGA IAFKTGKVGRPSKYDVRGIQKPGTTKIPPAPSLVPTPLTNVPSAPSAPGPGPEPPASLSFNTPE YLKSTFSKTDSITTGTVSTVKNGLPTDKPAVTEDVNIYQKYIARFSGSQHCGHIHCAYQYREHY HCLDPECNYQRFTSKQDVIRHYNMHKKRDNSLQHGFMRFSPLDDCSVYYHGCHLNGKSTHYHCM QVGCNKVYTSTSDVMTHENFHKKNTQLINDGFQRFRATEDCGTADCQFYGQKTTHFHCRRPGCT FTFKNKCDIEKHKSYHIKDDAYAKDGFKKFYKYEECKYEGCVYSKATNHFHCIRAGCGFTFTST SQMTSHKRKHERRHIRSSGALGLPASLLGTKDTEHEESSNDDLVDFSALSSKNSSLSASPNSQQ SSASLAAAAAATTAEAVPSAAKPPNSKMAGLLPQGLSGSIPLALALSNSGLPTTTPYFPLLPGR GSASLPVGSPGLLGSMTSGATTSATPDMPALMASGAGDSAPTAATSLSVPPASIMERISASKGL ISPMMARLAAAALKPSATFDPGSGQQSTPTKFPQAQVKQEPDSAGTPGPHEASQDRSLDLTVKE PSNESNGHAVPANSSLLSSLMNKMSQGNPSLGNLLNIKTEVEGSPAGEPSPFLGKAVKALVQEK LSEPWKVYLRRFGTKDFCDAQCDFLHKAHFHCVVEECGALFSTLDGAIKHANFHFRTEGGTAKG TTEASFPTSAAETKPPLAPSSPPAPPGTMVPGSSLEGPAPSPVSVPSTPTLLAWKQLASTIPQM PQIPSSVPHLPTSPLATTSLESAKPQVKPGFLQFQDNDPCLATDCKYASKFHFHCLFGNCKYVC KTSGKAESHCLDHINPSNSLVNVRDQFAYYSLQCLCPNQHCEFRMRGHYHCLRTGCYFVTNITT KLPWHIKKHEKAERRAANGFKYFTKREECGRLGCKYNQVNSHFHCIREGCQFSFLLKHQMTSHA RKHMRRMLGKNFDRVPPSQGPPSLMDAETDEGMDYTGCSPGAASSESSTMDRSCSSTPVGNEST AAGNTISMPTASGAKKRFWIIEDMSPFGKRRKTASSRKMLDEGMMLEGFRRFDLYEDCKDTACQ FSLKVTHYHCTRENCGYKFCGRTHMYKHAQHHDRVDNLVLDDFKRFKASLSCHFADCPFSGTST HFHCLRCRFRCTDSTKVTAHRKHHGKQDVISAAGFCQFSSSADCAVPDCKYKLKCSHFHCTYPG CRHTVVGMSQMDSHKRKHEKQERGEPPAASPGAPVSLDGSLTLAAEQGSLLFLQTAAAGLGLLG DTGDPGPPVTAPGTRDAPAAPAPVAAAAATTTTTTTTTTTSSAAGESSQEDDEEELEMPEEEAE EDDEDDDEEDDDDEDDDDDDDDEDLRTDSEESLPEAAGEAGARTPLAALGGPGPAPTAASP hide sequence

Ensembl Acc Id:

ENSRNOP00000018000 ⟸ ENSRNOT00000018000

Ensembl Acc Id:

ENSRNOP00000091853 ⟸ ENSRNOT00000094206

Ensembl Acc Id:

ENSRNOP00000081497 ⟸ ENSRNOT00000109654

Ensembl Acc Id:

ENSRNOP00000079561 ⟸ ENSRNOT00000103298

RefSeq Acc Id:	NP_001414597 ⟸ NM_001427668
- UniProtKB:	A0A8I5ZS43 (UniProtKB/TrEMBL), A6IU91 (UniProtKB/TrEMBL)

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M0M0-F1-model_v2	AlphaFold	F1M0M0	1-1691	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694289

Promoter ID:

EPDNEW_R4791

Type:

initiation region

Name:

Casz1_1

Description:

castor zinc finger 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	165,724,031 - 165,724,091	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563533	AgrOrtholog
BioCyc Gene	G2FUF-39150	BioCyc
Ensembl Genes	ENSRNOG00000013474	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000018000.9	UniProtKB/TrEMBL
	ENSRNOT00000094206	ENTREZGENE
	ENSRNOT00000094206.1	UniProtKB/TrEMBL
	ENSRNOT00000103298	ENTREZGENE
	ENSRNOT00000103298.1	UniProtKB/TrEMBL
	ENSRNOT00000109654	ENTREZGENE
	ENSRNOT00000109654.1	UniProtKB/TrEMBL
InterPro	CASZ1	UniProtKB/TrEMBL
	Znf_C2H2_type	UniProtKB/TrEMBL
NCBI Gene	313713	ENTREZGENE
PANTHER	PTHR12451	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN CASTOR HOMOLOG 1	UniProtKB/TrEMBL
PhenoGen	Casz1	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000013474	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
UniProt	A0A8I5ZR86_RAT	UniProtKB/TrEMBL
	A0A8I5ZS43	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AGF7	ENTREZGENE, UniProtKB/TrEMBL
	A6IU91	ENTREZGENE, UniProtKB/TrEMBL
	F1M0M0_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-12	Casz1	castor zinc finger 1	RGD1563533	similar to novel protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1563533	similar to novel protein	RGD1563533_predicted	similar to novel protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1563533_predicted	similar to novel protein (predicted)	LOC313713	similar to novel protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC313713	similar to novel protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - MGI