Mir124-1 (microRNA 124-1) - Rat Genome Database

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Gene: Mir124-1 (microRNA 124-1) Rattus norvegicus
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Symbol: Mir124-1
Name: microRNA 124-1
RGD ID: 2325336
Description: Predicted to enable mRNA binding activity. Predicted to act upstream of or within several processes, including miRNA-mediated post-transcriptional gene silencing; nervous system development; and positive regulation of exit from mitosis. Predicted to be part of RISC complex. Orthologous to human MIR124-1 (microRNA 124-1); INTERACTS WITH arsenite(3-) (ortholog); benzo[a]pyrene (ortholog); lead(0) (ortholog).
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA mir-124-1; rno-mir-124-1
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,017,834 - 43,017,918 (+)NCBIGRCr8
mRatBN7.21538,842,014 - 38,842,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1538,842,014 - 38,842,098 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1540,706,827 - 40,706,911 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01541,857,513 - 41,857,597 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01540,302,581 - 40,302,665 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01547,964,298 - 47,964,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,964,298 - 47,964,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01551,712,751 - 51,712,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1538,519,509 - 38,519,593 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (ISO)

Molecular Function
mRNA binding  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14691248   PMID:15345052   PMID:16381832   PMID:17403776   PMID:17604727   PMID:19515986   PMID:19536157   PMID:19703567   PMID:19898466   PMID:20403161   PMID:20937378   PMID:21139978  
PMID:21857657   PMID:22433412   PMID:22999930   PMID:23826665   PMID:23928694   PMID:24247359   PMID:26071557   PMID:26453334   PMID:26611840   PMID:26620774   PMID:26823764   PMID:26947066  
PMID:26984601   PMID:26996991   PMID:27094431   PMID:27159442   PMID:27786595   PMID:28235243   PMID:28284951   PMID:28478799   PMID:28560580   PMID:28791348   PMID:28826069   PMID:29428935  
PMID:30024097   PMID:30480807   PMID:30714138   PMID:31014193   PMID:31131895   PMID:31210282   PMID:31378908   PMID:31486506   PMID:32142864   PMID:32272965   PMID:32918278   PMID:33026076  
PMID:33085064   PMID:34146302   PMID:34236792   PMID:34681723   PMID:34874512   PMID:35753367   PMID:36541921   PMID:36768614   PMID:37932484  


Genomics

Comparative Map Data
Mir124-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,017,834 - 43,017,918 (+)NCBIGRCr8
mRatBN7.21538,842,014 - 38,842,098 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1538,842,014 - 38,842,098 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1540,706,827 - 40,706,911 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01541,857,513 - 41,857,597 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01540,302,581 - 40,302,665 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01547,964,298 - 47,964,382 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1547,964,298 - 47,964,382 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01551,712,751 - 51,712,835 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1538,519,509 - 38,519,593 (+)NCBICelera
Cytogenetic Map15p12NCBI
MIR124-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3889,903,388 - 9,903,472 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl89,903,388 - 9,903,472 (-)EnsemblGRCh38hg38GRCh38
GRCh3789,760,898 - 9,760,982 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 3689,798,307 - 9,798,391 (-)NCBINCBI36Build 36hg18NCBI36
Celera88,887,241 - 8,887,325 (-)NCBICelera
Cytogenetic Map8p23.1NCBI
HuRef88,689,475 - 8,689,559 (-)NCBIHuRef
CHM1_189,826,429 - 9,826,513 (-)NCBICHM1_1
T2T-CHM13v2.089,837,486 - 9,837,570 (+)NCBIT2T-CHM13v2.0
Mir124a-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391464,828,106 - 64,828,190 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1464,828,106 - 64,828,190 (+)EnsemblGRCm39 Ensembl
GRCm381464,590,657 - 64,590,741 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1464,590,657 - 64,590,741 (+)EnsemblGRCm38mm10GRCm38
MGSCv371465,209,494 - 65,209,578 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1462,355,431 - 62,355,515 (+)NCBICelera
Cytogenetic Map14D1NCBI
cM Map1433.77NCBI
MIR124-1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12528,188,264 - 28,188,322 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2528,188,250 - 28,188,334 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2528,836,284 - 28,836,342 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02528,342,736 - 28,342,794 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2528,342,722 - 28,342,806 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12528,302,507 - 28,302,565 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02528,189,876 - 28,189,934 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02528,352,255 - 28,352,313 (+)NCBIUU_Cfam_GSD_1.0
MIR124A-2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1413,201,425 - 13,201,509 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11413,201,425 - 13,201,509 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21414,443,005 - 14,443,089 (-)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

nervous system reproductive system
High
Medium 28
Low 41
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NR_031866 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000053594
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1538,842,014 - 38,842,098 (+)Ensembl
Rnor_6.0 Ensembl1547,964,298 - 47,964,382 (+)Ensembl
RefSeq Acc Id: NR_031866
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81543,017,834 - 43,017,918 (+)NCBI
mRatBN7.21538,842,014 - 38,842,098 (+)NCBI
Rnor_6.01547,964,298 - 47,964,382 (+)NCBI
Rnor_5.01551,712,751 - 51,712,835 (+)NCBI
Celera1538,519,509 - 38,519,593 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325336 AgrOrtholog
BioCyc Gene G2FUF-13372 BioCyc
Ensembl Genes ENSRNOG00000035471 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053594 ENTREZGENE
miRBase MI0000893 ENTREZGENE
NCBI Gene 100314291 ENTREZGENE
PhenoGen Mir124-1 PhenoGen
RatGTEx ENSRNOG00000035471 RatGTEx
RNAcentral URS000020BE6A RNACentral
  URS00003AA409 RNACentral
  URS000075A939 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-14 Mir124-1  microRNA 124-1  Mir124-1  microRNA mir-124-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2010-06-02 Mir124-1  microRNA mir-124-1      Symbol and Name status set to provisional 70820 PROVISIONAL