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ONTOLOGY REPORT - ANNOTATIONS


Term:retina vasculature development in camera-type eye
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Accession:GO:0061298 term browser browse the term
Definition:The process whose specific outcome is the progression of the vasculature of the retina over time, from its formation to the mature structure.
Synonyms:exact_synonym: retinal vasculature development



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retina vasculature development in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B involved_in ISO (MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:4436974 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:119,138,812...119,170,458
JBrowse link
G Acvrl1 activin A receptor like type 1 involved_in ISO (MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:4436974 NCBI chr 7:132,239,200...132,256,592
Ensembl chr 7:132,239,729...132,256,591
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISO (MGI:4436974|PMID:19903896) RGD PMID:19903896 MGI:4436974 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 acts_upstream_of_or_within ISO MGI:2154690 (MGI:3829820|PMID:19005183) RGD PMID:19005183 MGI:3829820 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2386679 (MGI:4950335|PMID:21212189)
Ensembl
RGD
PMID:21212189 GO_REF:0000107 MGI:4950335 NCBI chr 6:92,624,059...92,669,262
Ensembl chr 6:92,624,390...92,669,261
JBrowse link
G Mir218-2 microRNA 218-2 acts_upstream_of_or_within ISO (MGI:5297649|PMID:20947829) RGD PMID:20947829 MGI:5297649 NCBI chr10:20,068,451...20,068,560
Ensembl chr10:20,068,451...20,068,560
JBrowse link
G Mir23a microRNA 23a acts_upstream_of_or_within ISO (MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:5002393 NCBI chr19:23,954,997...23,955,071
Ensembl chr19:23,954,997...23,955,071
JBrowse link
G Mir23b microRNA 23b acts_upstream_of_or_within ISO (MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:5002393 NCBI chr17:1,813,667...1,813,763
Ensembl chr17:1,813,667...1,813,763
JBrowse link
G Mir24-2 microRNA 24-2 acts_upstream_of_or_within ISO (MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:5002393 NCBI chr19:23,954,683...23,954,790
Ensembl chr19:23,954,683...23,954,790
JBrowse link
G Mir27a microRNA 27a acts_upstream_of_or_within ISO (MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:5002393 NCBI chr19:23,954,831...23,954,917
Ensembl chr19:23,954,831...23,954,917
JBrowse link
G Mir27b microRNA 27b acts_upstream_of_or_within ISO (MGI:5002393|PMID:21536891) RGD PMID:21536891 MGI:5002393 NCBI chr17:1,813,427...1,813,523
Ensembl chr17:1,813,426...1,813,529
JBrowse link
G Pdgfb platelet derived growth factor subunit B acts_upstream_of_or_within ISO MGI:2670574 (MGI:5607451|PMID:25224828) RGD PMID:25224828 MGI:5607451 NCBI chr 7:111,539,444...111,557,984
Ensembl chr 7:111,540,345...111,557,984
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISS
ISO
IEA
GO_REF:0000024
UniProtKB:P05622 (MGI:1931346|PMID:11239463)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:11239463 GO_REF:0000024 GO_REF:0000107 MGI:1931346 NCBI chr14:33,005,838...33,054,347
Ensembl chr14:33,005,839...33,054,335
JBrowse link
G Pdgfrb platelet derived growth factor receptor beta involved_in ISS
ISO
GO_REF:0000024
UniProtKB:P26618 (MGI:1931346|PMID:11239463), (MGI:2680741|PMID:14624252)
UniProt
RGD
PMID:11239463 PMID:14624252 GO_REF:0000024 MGI:1931346 MGI:2680741 NCBI chr18:54,500,002...54,538,843
Ensembl chr18:54,499,964...54,538,843
JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (MGI:4437581|PMID:20300562) RGD PMID:20300562 MGI:4437581 NCBI chr 1:205,824,050...205,826,058
Ensembl chr 1:205,824,052...205,826,175
JBrowse link
G Vstm4 V-set and transmembrane domain containing 4 acts_upstream_of_or_within ISO (MGI:6393395|PMID:31698979) RGD PMID:31698979 MGI:6393395 NCBI chr16:8,120,336...8,200,272
Ensembl chr16:8,120,336...8,200,269
JBrowse link
retina vasculature morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arhgef15 Rho guanine nucleotide exchange factor 15 acts_upstream_of_or_within ISO MGI:3812708 (MGI:5441394|PMID:22535667) RGD PMID:22535667 MGI:5441394 NCBI chr10:53,650,521...53,662,914
Ensembl chr10:53,650,553...53,663,913
JBrowse link
G Clic4 chloride intracellular channel 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3838012 (MGI:3837628|PMID:19197003)
Ensembl
RGD
PMID:19197003 GO_REF:0000107 MGI:3837628 NCBI chr 5:147,456,819...147,513,278
Ensembl chr 5:147,453,712...147,513,452
JBrowse link
G Fzd4 frizzled class receptor 4 involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:12172548), (PMID:15024691)
MGI:102570|MGI:1278315|MGI:4412057 (MGI:4366716|PMID:19837032)
PMID:21873635
RGD PMID:12172548 PMID:15024691 PMID:19837032 PMID:21873635 MGI:4366716, RGD:13792537 NCBI chr 1:143,280,065...143,288,799
Ensembl chr 1:143,280,065...143,285,724
JBrowse link
G Lrp5 LDL receptor related protein 5 acts_upstream_of_or_within IMP
ISO
MGI:102570|MGI:108520|MGI:2183279|MGI:3774282 (MGI:2178168|PMID:11956231), (MGI:3790936|PMID:18263894), (MGI:4366716|PMID:19837032) RGD PMID:11956231 PMID:18263894 PMID:19837032 PMID:32833527 MGI:2178168 MGI:3790936 MGI:4366716, RGD:40902996 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO MGI:108520|MGI:1278315 (MGI:4366716|PMID:19837032) RGD PMID:19837032 MGI:4366716 NCBI chr  X:5,796,487...5,820,934
Ensembl chr  X:5,796,487...5,820,934
JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:5562961|PMID:24401374) RGD PMID:24401374 MGI:5562961 NCBI chr19:56,359,455...56,514,628
Ensembl chr19:56,359,455...56,513,633
JBrowse link
G Rhoj ras homolog family member J acts_upstream_of_or_within ISO MGI:4365246 (MGI:5441394|PMID:22535667) RGD PMID:22535667 MGI:5441394 NCBI chr 6:94,035,307...94,117,642
Ensembl chr 6:94,035,483...94,118,275
JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:2680888 NCBI chr15:10,585,307...10,664,781
Ensembl chr15:10,588,979...10,664,781
JBrowse link
retinal blood vessel morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col4a1 collagen type IV alpha 1 chain involved_in ISO (PMID:20818663) RGD PMID:20818663 NCBI chr16:78,183,533...78,294,412
Ensembl chr16:78,183,533...78,294,412
JBrowse link
G Cyp1b1 cytochrome P450, family 1, subfamily b, polypeptide 1 involved_in ISS
IEA
ISO
GO_REF:0000024
GO_REF:0000107
(MGI:4431324|PMID:20032512)
UniProt
Ensembl
RGD
PMID:20032512 GO_REF:0000024 GO_REF:0000107 MGI:4431324 NCBI chr 6:15,342,312...15,350,886
Ensembl chr 6:15,342,344...15,350,917
JBrowse link
G Fzd4 frizzled class receptor 4 involved_in ISO (MGI:3621833|PMID:15035989) RGD PMID:15035989 MGI:3621833 NCBI chr 1:143,280,065...143,288,799
Ensembl chr 1:143,280,065...143,285,724
JBrowse link
G Lama1 laminin subunit alpha 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 9:107,692,770...107,816,847
Ensembl chr 9:107,692,770...107,817,478
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IBA
(PMID:15024691), (PMID:15346351)
PMID:21873635
(MGI:6092915|PMID:27031698)
RGD PMID:15024691 PMID:15346351 PMID:27031698 PMID:21873635 MGI:6092915, RGD:13792537 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18877
    developmental process 6926
      anatomical structure development 6400
        retina development in camera-type eye 218
          retina vasculature development in camera-type eye 26
            retina vasculature morphogenesis in camera-type eye + 11
Path 2
Term Annotations click to browse term
  biological_process 18877
    developmental process 6926
      anatomical structure development 6400
        multicellular organism development 5454
          system development 4923
            sensory system development 479
              visual system development 474
                eye development 471
                  camera-type eye development 421
                    retina development in camera-type eye 218
                      retina vasculature development in camera-type eye 26
                        retina vasculature morphogenesis in camera-type eye + 11
paths to the root