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Gene: Vsx2 (visual system homeobox 2) Rattus norvegicus
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Symbol: Vsx2
Name: visual system homeobox 2
RGD ID: 621215
Description: Predicted to have sequence-specific double-stranded DNA binding activity. Predicted to be involved in several processes, including regulation of neural retina development; regulation of transcription by RNA polymerase II; and retinal bipolar neuron differentiation. Predicted to localize to cytoplasm and nucleus. Human ortholog(s) of this gene implicated in blindness and isolated microphthalmia 2. Orthologous to human VSX2 (visual system homeobox 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: C. elegans ceh-10 homeo domain containing homolog; ceh-10 homeo domain containing homolog; ceh-10 homeo domain containing homolog (C. elegans); Chx10
Orthologs:
Homo sapiens (human) : VSX2 (visual system homeobox 2)  HGNC  Alliance
Mus musculus (house mouse) : Vsx2 (visual system homeobox 2)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vsx2 (visual system homeobox 2)
Pan paniscus (bonobo/pygmy chimpanzee) : VSX2 (visual system homeobox 2)
Canis lupus familiaris (dog) : VSX2 (visual system homeobox 2)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vsx2 (visual system homeobox 2)
Sus scrofa (pig) : VSX2 (visual system homeobox 2)
Chlorocebus sabaeus (African green monkey) : VSX2 (visual system homeobox 2)
Heterocephalus glaber (naked mole-rat) : Vsx2 (visual system homeobox 2)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.06108,285,031 - 108,308,588 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6108,285,822 - 108,308,587 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06117,237,657 - 117,260,423 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46108,638,063 - 108,660,830 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.16108,647,664 - 108,647,779 (+)NCBI
Celera6102,045,137 - 102,067,982 (+)NCBICelera
Cytogenetic Map6q31NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Vsx2
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 621215
Created: 2002-08-06
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.