Bhlhe23 (basic helix-loop-helix family, member e23) - Rat Genome Database

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Gene: Bhlhe23 (basic helix-loop-helix family, member e23) Rattus norvegicus
Analyze
Symbol: Bhlhe23
Name: basic helix-loop-helix family, member e23
RGD ID: 1559760
Description: Predicted to enable DNA-binding transcription factor activity and E-box binding activity. Predicted to be involved in neuron differentiation; positive regulation of transcription by RNA polymerase II; and sensory organ development. Predicted to act upstream of or within negative regulation of retinal cell programmed cell death; post-embryonic eye morphogenesis; and retinal rod cell development. Predicted to be active in nucleus. Orthologous to human BHLHE23 (basic helix-loop-helix family member e23); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: basic helix-loop-helix domain containing, class B4; Bhlhb4; class E basic helix-loop-helix protein 23; LOC499952; RGD1559760; similar to basic helix-loop-helix transcriptional regulator beta4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,266,572 - 188,268,786 (-)NCBIGRCr8
mRatBN7.23167,889,009 - 167,891,223 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,889,009 - 167,891,223 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,268,753 - 172,270,967 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,227,851 - 181,230,065 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,889,943 - 177,892,157 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,279,997 - 176,282,211 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,279,997 - 176,282,211 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,978,577 - 179,980,791 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,886,343 - 169,888,557 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3164,692,856 - 164,695,070 (+)NCBICelera
Cytogenetic Map3q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11863370   PMID:15363390   PMID:17255172  


Genomics

Comparative Map Data
Bhlhe23
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83188,266,572 - 188,268,786 (-)NCBIGRCr8
mRatBN7.23167,889,009 - 167,891,223 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3167,889,009 - 167,891,223 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3172,268,753 - 172,270,967 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03181,227,851 - 181,230,065 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03177,889,943 - 177,892,157 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03176,279,997 - 176,282,211 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3176,279,997 - 176,282,211 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03179,978,577 - 179,980,791 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43169,886,343 - 169,888,557 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3164,692,856 - 164,695,070 (+)NCBICelera
Cytogenetic Map3q43NCBI
BHLHE23
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382063,005,927 - 63,006,964 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2063,005,927 - 63,007,035 (-)EnsemblGRCh38hg38GRCh38
GRCh372061,637,279 - 61,638,316 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362061,107,846 - 61,108,787 (-)NCBINCBI36Build 36hg18NCBI36
Build 342061,107,846 - 61,108,787NCBI
Celera2058,313,980 - 58,315,036 (-)NCBICelera
Cytogenetic Map20q13.33NCBI
HuRef2058,354,584 - 58,355,640 (-)NCBIHuRef
CHM1_12061,538,035 - 61,539,091 (-)NCBICHM1_1
T2T-CHM13v2.02064,806,267 - 64,807,304 (-)NCBIT2T-CHM13v2.0
Bhlhe23
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392180,416,174 - 180,418,693 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2180,416,174 - 180,418,693 (-)EnsemblGRCm39 Ensembl
GRCm382180,774,381 - 180,776,900 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2180,774,381 - 180,776,900 (-)EnsemblGRCm38mm10GRCm38
MGSCv372180,509,086 - 180,511,605 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362180,704,066 - 180,706,308 (-)NCBIMGSCv36mm8
Celera2184,860,531 - 184,863,050 (-)NCBICelera
Cytogenetic Map2H4NCBI
cM Map2103.34NCBI
Bhlhe23
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555281,094,234 - 1,094,674 (+)NCBIChiLan1.0ChiLan1.0
BHLHE23
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22168,789,672 - 68,792,505 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12068,783,116 - 68,785,624 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02059,385,608 - 59,392,078 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12060,681,496 - 60,681,988 (-)NCBIpanpan1.1PanPan1.1panPan2
BHLHE23
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12446,791,368 - 46,792,019 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2445,975,704 - 45,976,372 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02447,663,555 - 47,669,166 (-)NCBIROS_Cfam_1.0
UNSW_CanFamBas_1.02446,884,708 - 46,885,377 (-)NCBIUNSW_CanFamBas_1.0
BHLHE23
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1762,227,916 - 62,228,638 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11762,217,583 - 62,228,599 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
BHLHE23
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.121,215,909 - 1,221,960 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl21,216,206 - 1,216,883 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605049,005,375 - 49,006,567 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bhlhe23
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474128,766,303 - 28,766,920 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474128,762,079 - 28,766,989 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:114
Count of miRNA genes:96
Interacting mature miRNAs:100
Transcripts:ENSRNOT00000013690
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
631541Bp81Blood pressure QTL 814arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3124122556169034231Rat
2303620Vencon4Ventilatory control QTL 43.9respiration trait (VT:0001943)tidal volume (CMO:0000222)3127162703168026850Rat
1578656Vnigr2Vascular neointimal growth QTL 24.2artery morphology trait (VT:0002191)lesioned artery residual lumen area (CMO:0001417)3130656562169034231Rat
1578653Vnigr3Vascular neointimal growth QTL 33.1artery morphology trait (VT:0002191)artery neointimal hyperplastic lesion area (CMO:0001414)3130656562169034231Rat
9589106Insul23Insulin level QTL 2313.860.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)3131635904169034231Rat
2298477Eau4Experimental allergic uveoretinitis QTL 40.0011uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)3137398739169034231Rat
8552952Pigfal13Plasma insulin-like growth factor 1 level QTL 13blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)3138799500169034231Rat
1298068Bp167Blood pressure QTL 1670.004arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3141074471169034231Rat
2317883Alcrsp26Alcohol response QTL 261.80.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)3145526770169034231Rat
8552791Vie2Viral induced encephalitis QTL 24.1brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)3145956084169034231Rat
1578666Vnigr1Vascular neointimal growth QTL 14.6artery morphology trait (VT:0002191)artery lumen area (CMO:0001409)3149040888168026850Rat
1300161Rf10Renal function QTL 103.57renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)3161192952169034231Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

circulatory system endocrine system hemolymphoid system nervous system renal system reproductive system respiratory system
High
Medium 8
Low 48 11
Below cutoff 4 1 1 14 4 17 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000013690   ⟹   ENSRNOP00000013690
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3167,889,009 - 167,891,223 (-)Ensembl
Rnor_6.0 Ensembl3176,279,997 - 176,282,211 (-)Ensembl
RefSeq Acc Id: NM_001109211   ⟹   NP_001102681
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83188,266,572 - 188,268,786 (-)NCBI
mRatBN7.23167,889,009 - 167,891,223 (-)NCBI
Rnor_6.03176,279,997 - 176,282,211 (-)NCBI
Rnor_5.03179,978,577 - 179,980,791 (-)NCBI
RGSC_v3.43169,886,343 - 169,888,557 (-)RGD
Celera3164,692,856 - 164,695,070 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001102681 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL88785 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000013690
  ENSRNOP00000013690.2
Reference Protein Sequences
RefSeq Acc Id: NP_001102681   ⟸   NM_001109211
- UniProtKB: D3ZU26 (UniProtKB/TrEMBL),   A6KM77 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000013690   ⟸   ENSRNOT00000013690
Protein Domains
bHLH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZU26-F1-model_v2 AlphaFold D3ZU26 1-223 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1559760 AgrOrtholog
BioCyc Gene G2FUF-46320 BioCyc
Ensembl Genes ENSRNOG00000010312 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013690 ENTREZGENE
  ENSRNOT00000013690.4 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro HLH_DNA-bd UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:499952 UniProtKB/TrEMBL
NCBI Gene 499952 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED UniProtKB/TrEMBL
  PTHR19290:SF53 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PhenoGen Bhlhe23 PhenoGen
PROSITE HLH UniProtKB/TrEMBL
RatGTEx ENSRNOG00000010312 RatGTEx
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP HLH_basic UniProtKB/TrEMBL
UniProt A6KM77 ENTREZGENE, UniProtKB/TrEMBL
  D3ZU26 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-02-19 Bhlhe23  basic helix-loop-helix family, member e23  Bhlhb4  basic helix-loop-helix domain containing, class B4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-28 Bhlhb4  basic helix-loop-helix domain containing, class B4  RGD1559760_predicted  similar to basic helix-loop-helix transcriptional regulator beta4 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1559760_predicted  similar to basic helix-loop-helix transcriptional regulator beta4 (predicted)  LOC499952  similar to basic helix-loop-helix transcriptional regulator beta4  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499952  similar to basic helix-loop-helix transcriptional regulator beta4      Symbol and Name status set to provisional 70820 PROVISIONAL