Ikzf1 (IKAROS family zinc finger 1)

Gene: Ikzf1 (IKAROS family zinc finger 1) Rattus norvegicus

Analyze

Symbol:

Ikzf1

Name:

IKAROS family zinc finger 1

RGD ID:

1562979

Description:

Predicted to enable several functions, including DNA-binding transcription repressor activity, RNA polymerase II-specific; identical protein binding activity; and nucleic acid binding activity. Predicted to be involved in erythrocyte differentiation; lymphocyte differentiation; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including hematopoietic or lymphoid organ development; lymphocyte differentiation; and regulation of transcription by RNA polymerase II. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of pericentric heterochromatin. Human ortholog(s) of this gene implicated in B-lymphoblastic leukemia/lymphoma; acute lymphoblastic leukemia; colorectal cancer; and common variable immunodeficiency 13. Orthologous to human IKZF1 (IKAROS family zinc finger 1); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

DNA-binding protein Ikaros; LOC305501; RGD1562979; similar to DNA-binding protein Ikaros form 1 - mouse

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	IKZF1 (IKAROS family zinc finger 1)	RGD	RGD
Mus musculus (house mouse):	Ikzf1 (IKAROS family zinc finger 1)	RGD	RGD
Chinchilla lanigera (long-tailed chinchilla):	Ikzf1 (IKAROS family zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	IKZF1 (IKAROS family zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	IKZF1 (IKAROS family zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ikzf1 (IKAROS family zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	IKZF1 (IKAROS family zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	IKZF1 (IKAROS family zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ikzf1 (IKAROS family zinc finger 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	IKZF1 (IKAROS family zinc finger 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ikzf1 (IKAROS family zinc finger 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ikzf1 (IKAROS family zinc finger 1 (Ikaros))	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ztf-16	Alliance	DIOPT (OMA\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ikzf1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	90,468,696 - 90,556,522 (+)	NCBI		GRCr8
mRatBN7.2	14	86,255,065 - 86,340,839 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	86,255,065 - 86,342,416 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	90,660,495 - 90,746,740 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	91,905,260 - 91,991,074 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	88,372,438 - 88,458,707 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	91,782,281 - 91,867,828 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	91,782,354 - 91,867,424 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	91,567,474 - 91,652,828 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	92,560,200 - 92,657,336 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	85,257,476 - 85,342,328 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute lymphoblastic leukemia (ISO)

B-lymphoblastic leukemia/lymphoma (ISO)

chronic myelogenous leukemia, BCR-ABL1 positive (ISO)

colorectal cancer (ISO)

common variable immunodeficiency (ISO)

common variable immunodeficiency 13 (ISO)

Diamond-Blackfan Anemia-Like (ISO)

Gastro-Enteropancreatic Neuroendocrine Tumor (ISO)

hepatocellular carcinoma (ISO)

lung adenocarcinoma (ISO)

lymphoma (ISO)

Neoplasm Metastasis (ISO)

pleomorphic xanthoastrocytoma (ISO)

primary immunodeficiency disease (ISO)

systemic lupus erythematosus (ISO)

teratoma (ISO)

ulcerative colitis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4,5,6,7-TETRABROMOBENZOTRIAZOLE (ISO)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

8-Br-cAMP (ISO)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amphetamine (EXP)

antirheumatic drug (ISO)

azoxystrobin (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

buta-1,3-diene (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

chloroprene (ISO)

clofibrate (EXP)

Cuprizon (EXP)

deguelin (ISO)

dexamethasone (ISO)

dimethylarsinic acid (ISO)

diquat (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

gentamycin (EXP)

Indeno[1,2,3-cd]pyrene (ISO)

indole-3-methanol (EXP)

L-ascorbic acid (ISO)

methoxychlor (EXP)

methyl methanesulfonate (ISO)

methylarsonic acid (ISO)

methylmercury chloride (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N,N-diethyl-m-toluamide (EXP)

N-ethyl-N-nitrosourea (ISO)

N-methyl-N-nitrosourea (ISO)

N-nitrosodiethylamine (EXP)

nickel atom (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

permethrin (EXP)

picoxystrobin (ISO)

pomalidomide (ISO)

protein kinase inhibitor (ISO)

pyrimidifen (ISO)

rotenone (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

succimer (ISO)

tamibarotene (ISO)

tebufenpyrad (ISO)

testosterone (EXP)

thifluzamide (ISO)

thimerosal (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

amacrine cell differentiation (ISO)

B cell differentiation (ISO)

erythrocyte differentiation (ISO)

establishment of protein localization (ISO)

forebrain development (ISO)

gland development (ISO)

hemopoiesis (ISO)

lymph node development (ISO)

lymphocyte differentiation (ISO)

natural killer cell differentiation (ISO)

negative regulation of DNA-templated transcription (ISO)

negative regulation of transcription by RNA polymerase II (ISO)

Peyer's patch development (ISO)

positive regulation of DNA-templated transcription (ISO)

positive regulation of gene expression (ISO)

positive regulation of multicellular organism growth (ISO)

positive regulation of neutrophil differentiation (ISO)

positive regulation of RNA polymerase II transcription preinitiation complex assembly (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

positive regulation of transcription elongation by RNA polymerase II (ISO)

regulation of DNA-templated transcription (ISO)

regulation of transcription by RNA polymerase II (IBA,ISO)

retinal bipolar neuron differentiation (ISO)

T cell differentiation (ISO)

thymus development (ISO)

Cellular Component

cytosol (IEA,ISO)

nucleoplasm (IEA,ISO)

nucleus (ISO)

pericentric heterochromatin (ISO)

protein-containing complex (ISO)

protein-DNA complex (ISO)

Molecular Function

DNA binding (ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (IEA)

DNA-binding transcription factor activity (IBA,ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (ISO)

identical protein binding (ISO)

metal ion binding (IEA)

poly-pyrimidine tract binding (ISO)

protein binding (ISO)

protein domain specific binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

sequence-specific DNA binding (ISO)

transcription cis-regulatory region binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Long-range epigenetic silencing associates with deregulation of Ikaros targets in colorectal cancer cells.	Javierre BM, etal., Mol Cancer Res. 2011 Aug;9(8):1139-51. doi: 10.1158/1541-7786.MCR-10-0515. Epub 2011 Jul 7.
3.	Methylation and Gene Expression of BCAT1 and IKZF1 in Colorectal Cancer Tissues.	Jedi M, etal., Clin Med Insights Oncol. 2018 May 10;12:1179554918775064. doi: 10.1177/1179554918775064. eCollection 2018.
4.	Prognostic value of genetic alterations in children with first bone marrow relapse of childhood B-cell precursor acute lymphoblastic leukemia.	Krentz S, etal., Leukemia. 2013 Feb;27(2):295-304. doi: 10.1038/leu.2012.155. Epub 2012 Jun 13.
5.	Detection of Colorectal Cancer in Circulating Cell-Free DNA by Methylated CpG Tandem Amplification and Sequencing.	Li J, etal., Clin Chem. 2019 Jul;65(7):916-926. doi: 10.1373/clinchem.2019.301804. Epub 2019 Apr 22.
6.	Disease risk factors identified through shared genetic architecture and electronic medical records.	Li L, etal., Sci Transl Med. 2014 Apr 30;6(234):234ra57. doi: 10.1126/scitranslmed.3007191.
7.	Relationship between post-surgery detection of methylated circulating tumor DNA with risk of residual disease and recurrence-free survival.	Murray DH, etal., J Cancer Res Clin Oncol. 2018 Sep;144(9):1741-1750. doi: 10.1007/s00432-018-2701-x. Epub 2018 Jul 10.
8.	Evaluation of Circulating Tumor DNA for Methylated BCAT1 and IKZF1 to Detect Recurrence of Stage II/Stage III Colorectal Cancer (CRC).	Musher BL, etal., Cancer Epidemiol Biomarkers Prev. 2020 Dec;29(12):2702-2709. doi: 10.1158/1055-9965.EPI-20-0574. Epub 2020 Sep 21.
9.	A two-gene blood test for methylated DNA sensitive for colorectal cancer.	Pedersen SK, etal., PLoS One. 2015 Apr 30;10(4):e0125041. doi: 10.1371/journal.pone.0125041. eCollection 2015.
10.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
12.	Evaluation of newly identified Ikaros family zinc finger 1 loci in colorectal cancer.	Sharma B, etal., J Cancer Res Ther. 2021 Jan-Mar;17(1):46-50. doi: 10.4103/jcrt.JCRT_844_20.
13.	Genomic signatures reveal DNA damage response deficiency in colorectal cancer brain metastases.	Sun J, etal., Nat Commun. 2019 Jul 18;10(1):3190. doi: 10.1038/s41467-019-10987-3.
14.	Circulating epigenetic biomarkers for detection of recurrent colorectal cancer.	Symonds EL, etal., Cancer. 2020 Apr 1;126(7):1460-1469. doi: 10.1002/cncr.32695. Epub 2020 Jan 7.
15.	Circulating tumour DNA for monitoring colorectal cancer-a prospective cohort study to assess relationship to tissue methylation, cancer characteristics and surgical resection.	Symonds EL, etal., Clin Epigenetics. 2018 May 16;10:63. doi: 10.1186/s13148-018-0500-5. eCollection 2018.
16.	A cross-sectional study comparing a blood test for methylated BCAT1 and IKZF1 tumor-derived DNA with CEA for detection of recurrent colorectal cancer.	Young GP, etal., Cancer Med. 2016 Oct;5(10):2763-2772. doi: 10.1002/cam4.868. Epub 2016 Oct 11.
17.	Evaluation of a panel of tumor-specific differentially-methylated DNA regions in IRF4, IKZF1 and BCAT1 for blood-based detection of colorectal cancer.	Young GP, etal., Clin Epigenetics. 2021 Jan 21;13(1):14. doi: 10.1186/s13148-020-00999-y.
18.	Inhibitory effects of transcription factor Ikaros on the expression of liver cancer stem cell marker CD133 in hepatocellular carcinoma.	Zhang L, etal., Oncotarget. 2014 Nov 15;5(21):10621-35. doi: 10.18632/oncotarget.2524.
19.	Ikaros is heterogeneously expressed in lung adenocarcinoma and is involved in its progression.	Zhao W, etal., J Int Med Res. 2020 Aug;48(8):300060520945860. doi: 10.1177/0300060520945860.

Additional References at PubMed

PMID:7923373	PMID:7969165	PMID:9560339	PMID:10218586	PMID:10366784	PMID:11805317	PMID:12406904	PMID:12617992	PMID:15491138	PMID:15767674	PMID:15841184	PMID:16467156
PMID:17934067	PMID:18804520	PMID:18940586	PMID:21245044	PMID:21548011	PMID:22106042	PMID:22301782	PMID:23071339	PMID:25654255

Genomics

Comparative Map Data

Ikzf1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	90,468,696 - 90,556,522 (+)	NCBI		GRCr8
mRatBN7.2	14	86,255,065 - 86,340,839 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	86,255,065 - 86,342,416 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	90,660,495 - 90,746,740 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	91,905,260 - 91,991,074 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	88,372,438 - 88,458,707 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	91,782,281 - 91,867,828 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	91,782,354 - 91,867,424 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	91,567,474 - 91,652,828 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	92,560,200 - 92,657,336 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	85,257,476 - 85,342,328 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

IKZF1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	50,303,455 - 50,405,101 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	50,304,068 - 50,405,101 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	50,343,660 - 50,472,799 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	50,411,725 - 50,440,293 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	50,218,438 - 50,244,768	NCBI
Celera	7	50,439,276 - 50,537,765 (+)	NCBI		Celera
Cytogenetic Map	7	p12.2	NCBI
HuRef	7	50,294,198 - 50,322,765 (+)	NCBI		HuRef
HuRef	7	50,224,730 - 50,247,709 (+)	NCBI		HuRef
CHM1_1	7	50,446,524 - 50,475,092 (+)	NCBI		CHM1_1
CHM1_1	7	50,346,669 - 50,369,648 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	50,464,429 - 50,566,317 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	50,381,631 - 50,478,870 (+)	NCBI

Ikzf1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	11,634,970 - 11,722,930 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	11,634,980 - 11,722,926 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	11,684,962 - 11,772,930 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	11,685,003 - 11,772,926 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	11,586,216 - 11,672,929 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	11,586,216 - 11,672,929 (+)	NCBI		MGSCv36	mm8
Celera	11	12,146,027 - 12,232,163 (+)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	7.02	NCBI

Ikzf1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	3,635,380 - 3,721,791 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	3,617,988 - 3,721,791 (-)	NCBI	ChiLan1.0	ChiLan1.0

IKZF1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	55,183,057 - 55,284,060 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	103,507,780 - 103,608,783 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	50,946,817 - 51,047,168 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	51,191,691 - 51,291,245 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	51,191,685 - 51,291,245 (+)	Ensembl	panpan1.1		panPan2

IKZF1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	1,661,851 - 1,750,987 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	1,661,690 - 1,770,768 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	1,653,280 - 1,744,958 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	1,719,409 - 1,812,327 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	1,719,944 - 1,812,326 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	1,693,685 - 1,785,344 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	1,690,232 - 1,781,782 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	1,826,862 - 1,918,574 (+)	NCBI		UU_Cfam_GSD_1.0

Ikzf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	104,966,894 - 105,063,530 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936686	1,462,145 - 1,556,451 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936686	1,459,582 - 1,556,478 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

IKZF1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	136,372,725 - 136,464,940 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	136,372,202 - 136,464,942 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	150,041,447 - 150,045,891 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

IKZF1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	8,398,902 - 8,500,431 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	8,402,719 - 8,484,723 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666062	13,778,793 - 13,883,296 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ikzf1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624740	3,785,209 - 3,875,841 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624740	3,785,342 - 3,875,892 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ikzf1
373 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	75
Count of miRNA genes:	54
Interacting mature miRNAs:	64
Transcripts:	ENSRNOT00000005902
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat
631213	Bw60	Body weight QTL60	4.51		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	79950921	95876975	Rat
4889951	Bss92	Bone structure and strength QTL 92	3.9		tibia area (VT:1000281)	tibia-fibula cortical bone total cross-sectional area (CMO:0001721)	14	82057471	95876975	Rat

Markers in Region

D14Uia3

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	86,258,403 - 86,258,598 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	91,785,693 - 91,785,887	NCBI	Rnor6.0
Rnor_5.0	14	91,570,812 - 91,571,006	UniSTS	Rnor5.0
RGSC_v3.4	14	92,563,538 - 92,563,733	RGD	RGSC3.4
RGSC_v3.4	14	92,563,539 - 92,563,733	UniSTS	RGSC3.4
RGSC_v3.1	14	92,582,683 - 92,582,878	RGD
Celera	14	85,260,815 - 85,261,009	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH137594

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	86,287,429 - 86,287,625 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	91,814,590 - 91,814,785	NCBI	Rnor6.0
Rnor_5.0	14	91,599,505 - 91,599,700	UniSTS	Rnor5.0
RGSC_v3.4	14	92,603,718 - 92,603,913	UniSTS	RGSC3.4
Celera	14	85,289,605 - 85,289,800	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH139754

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	86,342,476 - 86,342,684 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	91,869,464 - 91,869,671	NCBI	Rnor6.0
Rnor_5.0	14	91,654,287 - 91,654,494	UniSTS	Rnor5.0
RGSC_v3.4	14	92,659,376 - 92,659,583	UniSTS	RGSC3.4
Celera	14	85,344,368 - 85,344,575	UniSTS
RH 3.4 Map	14	634.49	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	4	28	20	19	20						9
Low	1	29	29	21		21	8	9	74	35	38	2	8
Below cutoff		10						2			3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251495	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251496	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273233	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000005902 ⟹ ENSRNOP00000005902

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	86,255,065 - 86,340,437 (+)	Ensembl
Rnor_6.0 Ensembl	14	91,782,354 - 91,867,424 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000080753 ⟹ ENSRNOP00000069446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	86,255,625 - 86,340,437 (+)	Ensembl
Rnor_6.0 Ensembl	14	91,783,514 - 91,867,098 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000094159 ⟹ ENSRNOP00000082686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	86,262,134 - 86,340,437 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000097538 ⟹ ENSRNOP00000086084

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	86,255,065 - 86,342,416 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113896 ⟹ ENSRNOP00000088172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	86,256,227 - 86,340,437 (+)	Ensembl

RefSeq Acc Id:

NM_001107237 ⟹ NP_001100707

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,468,696 - 90,554,061 (+)	NCBI
mRatBN7.2	14	86,255,065 - 86,340,437 (+)	NCBI
Rnor_6.0	14	91,782,354 - 91,867,424 (+)	NCBI
Rnor_5.0	14	91,567,474 - 91,652,828 (+)	NCBI
RGSC_v3.4	14	92,560,200 - 92,657,336 (+)	RGD
Celera	14	85,257,476 - 85,342,328 (+)	RGD

Sequence:

show sequence

CAGTCCTGACTCTACGCAGGCACTCAGTGCCTGACATGCCTGGGAGAGGTCTGCGGAGCCGTGG
AGCGTGGTGCAGGATTGCCTTGCTCCCACCTCTGCCCACAGACCCCTTCCACGCTGGCGCGTGC
ACACAGGCCGGGATGTAAGGCGCCATCCTAACTTCTGCCGTAAGCAGGTGGGAGGGAAGAGACG
CGAGAGATAATCTGAAGACAATGGATGTCGATGAGGGTCAAGACATGTCCCAAGTTTCAGGAAA
GGAGAGCCCTCCAGTCAGTGACACTCCGGATGAAGGGGATGAACCCATGCCTGTCCCCGAGGAC
CTGTCCACCTCTGGAGCACAGCAGAACTCCAAGAGTGATCGAGGCATGGGTGAACGGCCTTTCC
AGTGCAACCAGTGTGGGGCCTCCTTTACCCAGAAAGGCAACCTACTGCGGCACATCAAGCTGCA
CTCGGGCGAGAAGCCCTTCAAATGCCATCTCTGCAACTATGCCTGCCGCCGGAGGGACGCCCTC
ACCGGCCACCTAAGGACGCACTCCGTTGGTAAGCCTCACAAATGTGGATATTGTGGCCGGAGCT
ATAAACAGCGAAGCTCTTTAGAAGAACATAAAGAGCGATGCCACAACTACTTGGAAAGCATGGG
CCTCCCGGGCATGTACCCAGTCATTAAGGAAGAAACTAACCACAGCGAAATGGCAGAGGACCTG
TGCAAGATAGGAGCAGAGAGGTCCCTTGTTCTGGACAGGCTGGCCAGCAACGTCGCCAAACGTA
AGAGCTCTATGCCTCAGAAATTTCTTGGAGACAAGTGCCTGTCAGACATGCCCTATGACAGTGC
CAACTATGAGAAGGATGAGATGATGACATCCCACGTGATGGACCAGGCCATCAACAATGCCATT
AACTACCTGGGGGCTGAGTCCCTGCGCCCGTTGGTGCAGACACCCCCTGGTAGCTCCGAGGTGG
TGCCGGTCATCAGTTCCATGTACCAGCTGCACAAGCCCCCCTCAGACGGCCCACCACGGTCCAA
CCACTCAGCACAGGACAGCGCCGTGGAGAACTTGCTGCTGCTGTCCAAGGCCAAGTCCGTGTCA
TCAGAGCGGGAGGCCTCCCCAAGCAACAGCTGCCAAGACTCCACGGATACAGAGAGCAACGCGG
AGGAACAGCGCAGCGGTCTCATCTACCTAACCAACCACATCACTCCGCATGCGCGCAACGGGCT
GGCTCTCAAGGAGGAGCAGCGCGCCTACGAGGTGCTGAGGGCAGCCTCAGAGAACTCGCAGGAC
GCCTTCCGTGTGGTCAGCACGAGTGGTGAGCAGCTGAAGGTGTACAAGTGCGAACACTGCCGCG
TGCTCTTCCTGGATCATGTCATGTACACCATCCACATGGGCTGCCATGGCTTCCGGGATCCCTT
TGAGTGTAACATGTGTGGTTATCACAGCCAGGACAGGTACGAGTTCTCTTCCCACATCACACGG
GGGGAGCATCGCTACCACCTGAGCTAAACCCAGCCAGGCCCCACTGAAGCACAAAGATAGCTGG
GCATGCCTCTTTCCCAGCAGCTGGACCCACGGCGGACAATGTTGGGAGTGGATTTGCAGGCAGC
ATTTGTTCTTTTACGTTGGTTGTTTGAGATTTGATTTGCGTTTAGAAGACAAGTTTTTAATGTT
AGAGACAGGATTCCATTGCATCAGGAACGTTCAGAACACCCATCCTTCTAGACGGTTTTGTTGA
CTGCTAGCTGAGATTTCCCTGGTATGTGGCTTCCTAACGCTCTCCCTACCCGCCCCACCCCCAA
AACAGAGCCCGAATCTTCAGAGAAATTAATTAAACAATTACCCAAGTAGGAGCAAGGTGGATTT
TTCCCTAAGCAGAGTTTATACCACAAAGATTCTCCAAGTCCTCCAAAACAGCACAGGGACATCA
GCCTGTGCAGAGACCAGGGCCGAAGGCTGAACTTAGAAAGCTACTATTAGGCCATGTATTGCAC
GGCAATGCGGTGTCGGAACAAGATGTTTGAGGTGCTGAA

hide sequence

RefSeq Acc Id:

XM_006251491 ⟹ XP_006251553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,444 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,877 - 86,340,219 (+)	NCBI
Rnor_6.0	14	91,783,732 - 91,867,828 (+)	NCBI
Rnor_5.0	14	91,567,474 - 91,652,828 (+)	NCBI

Sequence:

show sequence

GGGTGCAGGAGTCCCCAGATCCCCGGCTGCTCTTCGCGCCCCAGGATCATTCTTGGCCCCCAAA
GCGCGGCGCACAAATCCACATAATCTGAAGACAATGGATGTCGATGAGGGTCAAGACATGTCCC
AAGTTTCAGGAAAGGAGAGCCCTCCAGTCAGTGACACTCCGGATGAAGGGGATGAACCCATGCC
TGTCCCCGAGGACCTGTCCACCTCTGGAGCACAGCAGAACTCCAAGAGTGATCGAGGCATGGCC
AGTAATGTTAAAGTAGAGACTCAGAGTGATGAAGAGAATGGGCGTGCCTGTGAAATGAATGGGG
AATGTGCAGAGGATTTACGAATGCTTGATGCCTCAGGAGAGAAAATGAATGGCTCCCACAGGGA
CCAAGGCAGCACGGCTTTGTCAGGAGTTGGAGGCATTCGACTTCCTAACGGAAAACTAAAGTGT
GATATCTGTGGGATCGTTTGCATCGGGCCCAATGTGCTCATGGTTCACAAAAGAAGTCATACTG
GTGAACGGCCTTTCCAGTGCAACCAGTGTGGGGCCTCCTTTACCCAGAAAGGCAACCTACTGCG
GCACATCAAGCTGCACTCGGGCGAGAAGCCCTTCAAATGCCATCTCTGCAACTATGCCTGCCGC
CGGAGGGACGCCCTCACCGGCCACCTAAGGACGCACTCCGTTGGTAAGCCTCACAAATGTGGAT
ATTGTGGCCGGAGCTATAAACAGCGAAGCTCTTTAGAAGAACATAAAGAGCGATGCCACAACTA
CTTGGAAAGCATGGGCCTCCCGGGCATGTACCCAGTCATTAAGGAAGAAACTAACCACAGCGAA
ATGGCAGAGGACCTGTGCAAGATAGGAGCAGAGAGGTCCCTTGTTCTGGACAGGCTGGCCAGCA
ACGTCGCCAAACGTAAGAGCTCTATGCCTCAGAAATTTCTTGGAGACAAGTGCCTGTCAGACAT
GCCCTATGACAGTGCCAACTATGAGAAGGATGAGATGATGACATCCCACGTGATGGACCAGGCC
ATCAACAATGCCATTAACTACCTGGGGGCTGAGTCCCTGCGCCCGTTGGTGCAGACACCCCCTG
GTAGCTCCGAGGTGGTGCCGGTCATCAGTTCCATGTACCAGCTGCACAAGCCCCCCTCAGACGG
CCCACCACGGTCCAACCACTCAGCACAGGACAGCGCCGTGGAGAACTTGCTGCTGCTGTCCAAG
GCCAAGTCCGTGTCATCAGAGCGGGAGGCCTCCCCAAGCAACAGCTGCCAAGACTCCACGGATA
CAGAGAGCAACGCGGAGGAACAGCGCAGCGGTCTCATCTACCTAACCAACCACATCACTCCGCA
TGCGCGCAACGGGCTGGCTCTCAAGGAGGAGCAGCGCGCCTACGAGGTGCTGAGGGCAGCCTCA
GAGAACTCGCAGGACGCCTTCCGTGTGGTCAGCACGAGTGGTGAGCAGCTGAAGGTGTACAAGT
GCGAACACTGCCGCGTGCTCTTCCTGGATCATGTCATGTACACCATCCACATGGGCTGCCATGG
CTTCCGGGATCCCTTTGAGTGTAACATGTGTGGTTATCACAGCCAGGACAGGTACGAGTTCTCT
TCCCACATCACACGGGGGGAGCATCGCTACCACCTGAGCTAAACCCAGCCAGGCCCCACTGAAG
CACAAAGATAGCTGGGCATGCCTCTTTCCCAGCAGCTGGACCCACGGCGGACAATGTTGGGAGT
GGATTTGCAGGCAGCATTTGTTCTTTTACGTTGGTTGTTTGAGATTTGATTTGCGTTTAGAAGA
CAAGTTTTTAATGTTAGAGACAGGATTCCATTGCATCAGGAACGTTCAGAACACCCATCCTTCT
AGACGGTTTTGTTGACTGCTAGCTGAGATTTCCCTGGTATGTGGCTTCCTAACGCTCTCCCTAC
CCGCCCCACCCCCAAAACAGAGCCCGAATCTTCAGAGAAATTAATTAAACAATTACCCAAGTAG
GAGCAAGGTGGATTTTTCCCTAAGCAGAGTTTATACCACAAAGATTCTCCAAGTCCTCCAAAAC
AGCACAGGGACATCAGCCTGTGCAGAGACCAGGGCCGAAGGCTGAACTTAGAAAGCTACTATTA
GGCCATGTATTGCACGGCAATGCGGTGTCGGAACAAGATGTTTGAGGTGCTGAAGGGAAGGGAT
TGGAGAGCCATGTGGCTCTTCTTCATTTGCCTGATCACACTCAGCCTCCTGAGGGCTTGATGCC
CAGTAAGATGAGCTCACTGCTCTTGTGATCGTTTTTCTATCAGTTCCGTGCCTTTAATGGCCCC
AAAGCTCATCACTGCATTTTAGAACCCAATCCTGAAATTGAGACCTTGTTTTAAACTTCTGATA
CTGTAAAACTTCTTGGAAGCCAAAGCTTTCTTCCAAGCCCCATCCCCAGTTATCTTGGTTCCTG
TTCTTCCCTGGGCTGATAGTTCCGGGACCTGCTATTCCATGAAAACAAGCACAACCCACCCTTC
ACTTCAACTGAACCCCTGTTCTGATTATAGCTATGGACTCGGCTGTCTTGATAAATGTCTTTCC
CTGCTCTGGA

hide sequence

RefSeq Acc Id:

XM_006251492 ⟹ XP_006251554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,470,209 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,256,577 - 86,340,839 (+)	NCBI
Rnor_6.0	14	91,783,836 - 91,867,828 (+)	NCBI
Rnor_5.0	14	91,567,474 - 91,652,828 (+)	NCBI

Sequence:

show sequence

TTCAGTAGGAAAACTTGGGGTAACTGGTGGATTTTTGTTTTTTCAAGTAGGAGTAGGAAAGAAA
GGAAAAGTCATTCGAAATCCATAGTGTCCGTGTCGCTCACTTCTGTCTTTTCCTTTCTGAGGAC
TGTGAGAGCTTTGACTTAGGTCAAATCCTCTGTCTTTTTAGGTTGGGGTTGCAGGTGCGAGACC
AGGCCAGTTGAGGCACTTCTGAGTAGCCCGGGGTCCCAGGAAGAGCACGTTCTGCTTTTCTGTT
TAGGCTTATATCGACATATCTAGCGAGATTACAGAAGCCAGCGTTTTCAAAGTCATGGGTAAAG
ACTTTCCTTATTTTTGATGCGACAGCTATTTGCTCTACTGATAAGATCCTGTCTGAGTTTGCTT
TGTGCAAAACAGAAATGGCCTGAGTATTGAAACGCGTACTTTTTCTCATCGCCCTGTCTGATCC
CAGGTCATGAAACTGTCGCAGGGAGACCCTGTTATCAAATAAGCATCAGGACGCTTGCAAATTA
TTGGAAACATGCATTTTAAAATTGCCAAGCATCACTGGTGATTCCCAAGGAATCTTATGAGCCT
TTGATTTCCTTCTAATTTGGGAGTACAGGATATGGCATTTGGTGACCCAAAGGGGTATCAATTC
AGAAGGTCTGAGCCAGAAGCCGTTTCCATTTTCTTTCGGGCTGGAGCCCACCTAGAGTGAATTT
TAAGGTGCGGTTTTGCTCAAGTAACCCACGCATAATTTCTCTCCCTGCTGCAGACAACCTATTT
CACCTTTGAGCTACCTTGTTTTAAACTTAAAAAACCAAAGTGGTGTTAGGGAAATAGCCCTTTA
CTGATCCAACCTACCTGTAGAAGAATTTTTAAAACGTTGAAAATGTATATAATACATAATACTT
TTTCATAGACATTGAAAGGCTTTTAACGATTGGTTCGTTTGGGTTATGAATCGAGACGGGGGTG
AAGTCAGTAAGAAAATCCCAGAGCCTGCTTCAGGGTCTTTGTTTGAAGATATTTGTTCTAGGAG
AATGAATTCATTCTTTTTTGTGAGATTTTTCAAGGTAACAGTTTAAACGTTATTCATATTATGT
TAGTACATGTCCAAATTGTTTCAGTGACAAATCAGATTACTTGGTATAAGACACAAAATTTAAA
CGGGAACAAATATCCAGGACAAAAGATTTGTCTGCTTACTTGGATCAGCACCCTATAATTCACA
GAACATGTATTGAGGACATAATGTAGGCACATCCATGTAAATGACAGTGGGGCACTTCACTGAC
GATACAATTCATTTGGTAAAACATGAATAATTTCAACTTTCCCCGCAAACACACATGGCTGTTC
CTTTTGTCGTAGAATAAAATATTTGTCCCAGACATGCAAGGCACTAGAGCTGATGGCCAAAATG
TTTCGAGTCTGATGCTTTCGTGTTTTGTTTTGTTTTGTTTTTCTCTCATGGTGACCACTGAAAC
CTAGAGTTAAGAAATTCCAAAGAACCTGTTTGTTTAATTCATTGGTGGTTTAATTTAAGGGCCA
AACCCCAAATTTAGAAGCCATCACAGCAATAATAGCCCACCATGGCGGCCTCACAAGCAGACAG
GAGCTGCTAATAGTGTGGATGCGTGTGACGTTTGACTCTTTCGAGAAGTTTGTGTACTGTCTCC
TAGAGAGAAAGCAAATGGTGGTTGTTCTTGTAGCATTACCATTGTTGAGAAATTAAGATCATGG
TTAATTTATTGCCCAAAAGAACTAAAGCCCAGCAGAGCCGTATGCCCCTGACATTCTCTTTACT
AAACTGAAGGCTGAGGATTAGAATGATGTTTCTTTGCCCTGAGGAAGTCTTCTCCTTGATTTGA
ATTTGTGTGCTTCATATTTGGTTAATGTAACAGCACATTGTTCAGGACAATGTCAGAACTTCTG
AAATCTGACAGGATGGTAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGA
TAGATCAGGATTACTTATATTAATATATAGGAAATAAATTACATGTGTACATATGTGCACACAC
CTGCTTGCACATGCACAGAGCACACACACTGTGTGTTTTGAGAGAGGCTTGAAAGCAGCGATGA
GAGAAGTTTTAACATTCAATACACCTAAGATGGGGAACTAATTTCCTTCATCTTATTTACTTTT
GACTCTTTTTTAAAATATGAAATAAAATGGTCTCTCTGTGATGGCAAACCGGGGCATAGTGTTA
ATTGTATACTATTAGGTAATTTTGAGGGGTTGCCAAATTTTGCACATTCATGTGCTGTCACTGC
AGTTAGTCAGGATTCATCAACGCTAGCGAGAAGAGCATTATGTCCCCTGAAATATTTGACGTTT
CAAAGCAGTCTAGGTTAAAGTAAGTGGCGCTTGCCATGTGCTAAGGAAAGTGGGATGTGATCTC
AGCACACTAAGAGCCTTTGAGGTCCTTGGGAGCCATTAGCTGCTGATGCCTGTTTTTAAGACAG
ACATATTTTGGGACACTGTGGTTCCTCTTAACGGCAGCTCCTTCTCTGGCTAGAAACCTGTGAG
GGGGACCGCTTCCTCTCCTGGAGCTCTCCCAGCTCACTTCATTGCCTAGGTTTGCTGTGCAATC
CTTAACATTTCACAGGAAAACACACGACCTGTGACTGCAACAAGTGATCCCTCCTGGGGATACA
GAGAGAGAAGCAGAAATCCATTACACATCTTGAAAGAGATCTTGGGTTTTTGTGTTTTTTTTTT
TTTTTACAAATAAACAGGAGGGGGCACTTTTTTAAAAACTCTAGATTTTAGGATGCATAACTGT
AGGGCTGAGGAAATGCTCACACCGGTGTGCTTCATATAAACCACTGTTTCCTCACATTCCTGTT
CATTTAGTTCAGGGCTTTAAACCCCAGGGTACTTTGTCCCATGGCTGGAATATATGCTTCTGTT
CTTAGAATTCCAGTATCCCCTCTTCAGTCGTGTTTGTTTGGTACAGCCCTTAGCAGCTGGATGA
TAATATAACAATTGTTTTAAGATGCTTGTAAGCATTTTTGCACACAGTACTACTATGTGTTATA
AATGAACCATACCCGCCAACAAAAGTATGATTTGCAAAATATTTCTAAAGGTAGAAATGGGTAT
CTGCCCTGGTTTTTGGGGTGGGGGTATCCTATGAGTTCTTCATGGCAAAATCTCAAAGGGGCAC
AGACACTGGCTGAGACACAATCTAAGGACAAGCGGCAAACTATTTTCCCAGGCATTTTCCCGTT
TTTACGTTAGACTATAATAAACAAGTGGATGCCAGGTGTCTTCAGCCAAACAGCTGGTGATAAG
TGTTTAAAAAAGAAAAAGGTGAAAAAGCCCAAGTTTCAGGCATGGAGGCCATTGGTTTTCTTTG
CAGGCCTGGGAGGGGTGCTTTTCCTGTGACCATGTCTTGCCAGGGGCAAGTCGTAATTCCTGTT
GACGAAAAGAACACCCCTTCCCACCCTATGTCTGACAAATCAGACATCCGAATGATTTCTGAAC
TCATGGGTTAAGACAGGAAGCATAGGCTCCCTTCCTGTGTGAGTGCTTCCCTGAGAGAAAACTA
GCTTCCCTCCTCCTTTGCATACTTGGCGACTGGCTCTACCTTTCTCTGAACCCCAGTGGTGTGT
GAGGGCCAGACTGGGACCTTGGAGGAAGAGGAACAGGGATCTGAGGCTCATCCAGGGACCAGGG
TCCTTCCCAAGTGGCTACTCTGAGGGGACTCAGACCAACTCTGGATTTGCGTGGCAGAGAGAGC
CAGCTCTCGTGTGGCCTTGGGGAGGTACAGTCCTGTTGATAATCTGAAGACAATGGATGTCGAT
GAGGGTCAAGACATGTCCCAAGTTTCAGGAAAGGAGAGCCCTCCAGTCAGTGACACTCCGGATG
AAGGGGATGAACCCATGCCTGTCCCCGAGGACCTGTCCACCTCTGGAGCACAGCAGAACTCCAA
GAGTGATCGAGGCATGGCCAGTAATGTTAAAGTAGAGACTCAGAGTGATGAAGAGAATGGGCGT
GCCTGTGAAATGAATGGGGAATGTGCAGAGGATTTACGAATGCTTGATGCCTCAGGAGAGAAAA
TGAATGGCTCCCACAGGGACCAAGGCAGCACGGCTTTGTCAGGAGTTGGAGGCATTCGACTTCC
TAACGGAAAACTAAAGTGTGATATCTGTGGGATCGTTTGCATCGGGCCCAATGTGCTCATGGTT
CACAAAAGAAGTCATACTGGTGAACGGCCTTTCCAGTGCAACCAGTGTGGGGCCTCCTTTACCC
AGAAAGGCAACCTACTGCGGCACATCAAGCTGCACTCGGGCGAGAAGCCCTTCAAATGCCATCT
CTGCAACTATGCCTGCCGCCGGAGGGACGCCCTCACCGGCCACCTAAGGACGCACTCCGTTGGT
AAGCCTCACAAATGTGGATATTGTGGCCGGAGCTATAAACAGCGAAGCTCTTTAGAAGAACATA
AAGAGCGATGCCACAACTACTTGGAAAGCATGGGCCTCCCGGGCATGTACCCAGTCATTAAGGA
AGAAACTAACCACAGCGAAATGGCAGAGGACCTGTGCAAGATAGGAGCAGAGAGGTCCCTTGTT
CTGGACAGGCTGGCCAGCAACGTCGCCAAACGTAAGAGCTCTATGCCTCAGAAATTTCTTGGAG
ACAAGTGCCTGTCAGACATGCCCTATGACAGTGCCAACTATGAGAAGGATGAGATGATGACATC
CCACGTGATGGACCAGGCCATCAACAATGCCATTAACTACCTGGGGGCTGAGTCCCTGCGCCCG
TTGGTGCAGACACCCCCTGGTAGCTCCGAGGTGGTGCCGGTCATCAGTTCCATGTACCAGCTGC
ACAAGCCCCCCTCAGACGGCCCACCACGGTCCAACCACTCAGCACAGGACAGCGCCGTGGAGAA
CTTGCTGCTGCTGTCCAAGGCCAAGTCCGTGTCATCAGAGCGGGAGGCCTCCCCAAGCAACAGC
TGCCAAGACTCCACGGATACAGAGAGCAACGCGGAGGAACAGCGCAGCGGTCTCATCTACCTAA
CCAACCACATCACTCCGCATGCGCGCAACGGGCTGGCTCTCAAGGAGGAGCAGCGCGCCTACGA
GGTGCTGAGGGCAGCCTCAGAGAACTCGCAGGACGCCTTCCGTGTGGTCAGCACGAGTGGTGAG
CAGCTGAAGGTGTACAAGTGCGAACACTGCCGCGTGCTCTTCCTGGATCATGTCATGTACACCA
TCCACATGGGCTGCCATGGCTTCCGGGATCCCTTTGAGTGTAACATGTGTGGTTATCACAGCCA
GGACAGGTACGAGTTCTCTTCCCACATCACACGGGGGGAGCATCGCTACCACCTGAGCTAAACC
CAGCCAGGCCCCACTGAAGCACAAAGATAGCTGGGCATGCCTCTTTCCCAGCAGCTGGACCCAC
GGCGGACAATGTTGGGAGTGGATTTGCAGGCAGCATTTGTTCTTTTACGTTGGTTGTTTGAGAT
TTGATTTGCGTTTAGAAGACAAGTTTTTAATGTTAGAGACAGGATTCCATTGCATCAGGAACGT
TCAGAACACCCATCCTTCTAGACGGTTTTGTTGACTGCTAGCTGAGATTTCCCTGGTATGTGGC
TTCCTAACGCTCTCCCTACCCGCCCCACCCCCAAAACAGAGCCCGAATCTTCAGAGAAATTAAT
TAAACAATTACCCAAGTAGGAGCAAGGTGGATTTTTCCCTAAGCAGAGTTTATACCACAAAGAT
TCTCCAAGTCCTCCAAAACAGCACAGGGACATCAGCCTGTGCAGAGACCAGGGCCGAAGGCTGA
ACTTAGAAAGCTACTATTAGGCCATGTATTGCACGGCAATGCGGTGTCGGAACAAGATGTTTGA
GGTGCTGAAGGGAAGGGATTGGAGAGCCATGTGGCTCTTCTTCATTTGCCTGATCACACTCAGC
CTCCTGAGGGCTTGATGCCCAGTAAGATGAGCTCACTGCTCTTGTGATCGTTTTTCTATCAGTT
CCGTGCCTTTAATGGCCCCAAAGCTCATCACTGCATTTTAGAACCCAATCCTGAAATTGAGACC
TTGTTTTAAACTTCTGATACTGTAAAACTTCTTGGAAGCCAAAGCTTTCTTCCAAGCCCCATCC
CCAGTTATCTTGGTTCCTGTTCTTCCCTGGGCTGATAGTTCCGGGACCTGCTATTCCATGAAAA
CAAGCACAACCCACCCTTCACTTCAACTGAACCCCTGTTCTGATTATAGCTATGGACTCGGCTG
TCTTGATAAATGTCTTTCCCTGCTCTGGA

hide sequence

RefSeq Acc Id:

XM_006251494 ⟹ XP_006251556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,199 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,727 - 86,340,839 (+)	NCBI
Rnor_6.0	14	91,783,039 - 91,867,828 (+)	NCBI
Rnor_5.0	14	91,567,474 - 91,652,828 (+)	NCBI

Sequence:

show sequence

CGCGCCGAGCGGGCCCGGCGCGGGCAAGCGGGCTGCAGCCGCCGGCGGCGCCAGCAGATAATCT
GAAGACAATGGATGTCGATGAGGGTCAAGACATGTCCCAAGTTTCAGGAAAGGAGAGCCCTCCA
GTCAGTGACACTCCGGATGAAGGGGATGAACCCATGCCTGTCCCCGAGGACCTGTCCACCTCTG
GAGCACAGCAGAACTCCAAGAGTGATCGAGGCATGGCCAGTAATGTTAAAGTAGAGACTCAGAG
TGATGAAGAGAATGGGCGTGCCTGTGAAATGAATGGGGAATGTGCAGAGGATTTACGAATGCTT
GATGCCTCAGGAGAGAAAATGAATGGCTCCCACAGGGACCAAGGCAGCACGGCTTTGTCAGGAG
TTGGAGGCATTCGACTTCCTAACGGAAAACTAAAGTGTGATATCTGTGGGATCGTTTGCATCGG
GCCCAATGTGCTCATGGTTCACAAAAGAAGTCATACTGGTGAACGGCCTTTCCAGTGCAACCAG
TGTGGGGCCTCCTTTACCCAGAAAGGCAACCTACTGCGGCACATCAAGCTGCACTCGGGCGAGA
AGCCCTTCAAATGCCATCTCTGCAACTATGCCTGCCGCCGGAGGGACGCCCTCACCGGCCACCT
AAGGACGCACTCCGTTGGTAAGCCTCACAAATGTGGATATTGTGGCCGGAGCTATAAACAGCGA
AGCTCTTTAGAAGAACATAAAGAGCGATGCCACAACTACTTGGAAAGCATGGGCCTCCCGGGCA
TGTACCCAGTCATTAAGGAAGAAACTAACCACAGCGAAATGGCAGAGGACCTGTGCAAGATAGG
AGCAGAGAGGTCCCTTGTTCTGGACAGGCTGGCCAGCAACGTCGCCAAACGTAAGAGCTCTATG
CCTCAGAAATTTCTTGGAGACAAGTGCCTGTCAGACATGCCCTATGACAGTGCCAACTATGAGA
AGGATGAGATGATGACATCCCACGTGATGGACCAGGCCATCAACAATGCCATTAACTACCTGGG
GGCTGAGTCCCTGCGCCCGTTGGTGCAGACACCCCCTGGTAGCTCCGAGGTGGTGCCGGTCATC
AGTTCCATGTACCAGCTGCACAAGCCCCCCTCAGACGGCCCACCACGGTCCAACCACTCAGCAC
AGGACAGCGCCGTGGAGAACTTGCTGCTGCTGTCCAAGGCCAAGTCCGTGTCATCAGAGCGGGA
GGCCTCCCCAAGCAACAGCTGCCAAGACTCCACGGATACAGAGAGCAACGCGGAGGAACAGCGC
AGCGGTCTCATCTACCTAACCAACCACATCACTCCGCATGCGCGCAACGGGCTGGCTCTCAAGG
AGGAGCAGCGCGCCTACGAGGTGCTGAGGGCAGCCTCAGAGAACTCGCAGGACGCCTTCCGTGT
GGTCAGCACGAGTGGTGAGCAGCTGAAGGTGTACAAGTGCGAACACTGCCGCGTGCTCTTCCTG
GATCATGTCATGTACACCATCCACATGGGCTGCCATGGCTTCCGGGATCCCTTTGAGTGTAACA
TGTGTGGTTATCACAGCCAGGACAGGTACGAGTTCTCTTCCCACATCACACGGGGGGAGCATCG
CTACCACCTGAGCTAAACCCAGCCAGGCCCCACTGAAGCACAAAGATAGCTGGGCATGCCTCTT
TCCCAGCAGCTGGACCCACGGCGGACAATGTTGGGAGTGGATTTGCAGGCAGCATTTGTTCTTT
TACGTTGGTTGTTTGAGATTTGATTTGCGTTTAGAAGACAAGTTTTTAATGTTAGAGACAGGAT
TCCATTGCATCAGGAACGTTCAGAACACCCATCCTTCTAGACGGTTTTGTTGACTGCTAGCTGA
GATTTCCCTGGTATGTGGCTTCCTAACGCTCTCCCTACCCGCCCCACCCCCAAAACAGAGCCCG
AATCTTCAGAGAAATTAATTAAACAATTACCCAAGTAGGAGCAAGGTGGATTTTTCCCTAAGCA
GAGTTTATACCACAAAGATTCTCCAAGTCCTCCAAAACAGCACAGGGACATCAGCCTGTGCAGA
GACCAGGGCCGAAGGCTGAACTTAGAAAGCTACTATTAGGCCATGTATTGCACGGCAATGCGGT
GTCGGAACAAGATGTTTGAGGTGCTGAAGGGAAGGGATTGGAGAGCCATGTGGCTCTTCTTCAT
TTGCCTGATCACACTCAGCCTCCTGAGGGCTTGATGCCCAGTAAGATGAGCTCACTGCTCTTGT
GATCGTTTTTCTATCAGTTCCGTGCCTTTAATGGCCCCAAAGCTCATCACTGCATTTTAGAACC
CAATCCTGAAATTGAGACCTTGTTTTAAACTTCTGATACTGTAAAACTTCTTGGAAGCCAAAGC
TTTCTTCCAAGCCCCATCCCCAGTTATCTTGGTTCCTGTTCTTCCCTGGGCTGATAGTTCCGGG
ACCTGCTATTCCATGAAAACAAGCACAACCCACCCTTCACTTCAACTGAACCCCTGTTCTGATT
ATAGCTATGGACTCGGCTGTCTTGATAAATGTCTTTCCCTGCTCTGGA

hide sequence

RefSeq Acc Id:

XM_008770313 ⟹ XP_008768535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,299 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,726 - 86,340,839 (+)	NCBI
Rnor_6.0	14	91,783,038 - 91,867,828 (+)	NCBI

Sequence:

show sequence

GCGCGCCGAGCGGGCCCGGCGCGGGCAAGCGGGCTGCAGCCGCCGGCGGCGCCAGCAGATAATC
TGAAGACAATGGATGTCGATGAGGGTCAAGACATGTCCCAAGTTTCAGGAAAGGAGAGCCCTCC
AGTCAGTGACACTCCGGATGAAGGGGATGAACCCATGCCTGTCCCCGAGGACCTGTCCACCTCT
GGAGCACAGCAGAACTCCAAGAGTGATCGAGGCATGGCCAGTAATGTTAAAGTAGAGACTCAGA
GTGATGAAGAGAATGGGCGTGCCTGTGAAATGAATGGGGAATGTGCAGAGGATTTACGAATGCT
TGATGCCTCAGGAGAGAAAATGAATGGCTCCCACAGGGACCAAGGCAGCACGGCTTTGTCAGGA
GTTGGAGGCATTCGACTTCCTAACGGAAAACTAAAGTGTGATATCTGTGGGATCGTTTGCATCG
GGCCCAATGTGCTCATGGTTCACAAAAGAAGTCATACTGGTGAACGGCCTTTCCAGTGCAACCA
GTGTGGGGCCTCCTTTACCCAGAAAGGCAACCTACTGCGGCACATCAAGCTGCACTCGGGCGAG
AAGCCCTTCAAATGCCATCTCTGCAACTATGCCTGCCGCCGGAGGGACGCCCTCACCGGCCACC
TAAGGACGCACTCCGTCATTAAGGAAGAAACTAACCACAGCGAAATGGCAGAGGACCTGTGCAA
GATAGGAGCAGAGAGGTCCCTTGTTCTGGACAGGCTGGCCAGCAACGTCGCCAAACGTAAGAGC
TCTATGCCTCAGAAATTTCTTGGAGACAAGTGCCTGTCAGACATGCCCTATGACAGTGCCAACT
ATGAGAAGGATGAGATGATGACATCCCACGTGATGGACCAGGCCATCAACAATGCCATTAACTA
CCTGGGGGCTGAGTCCCTGCGCCCGTTGGTGCAGACACCCCCTGGTAGCTCCGAGGTGGTGCCG
GTCATCAGTTCCATGTACCAGCTGCACAAGCCCCCCTCAGACGGCCCACCACGGTCCAACCACT
CAGCACAGGACAGCGCCGTGGAGAACTTGCTGCTGCTGTCCAAGGCCAAGTCCGTGTCATCAGA
GCGGGAGGCCTCCCCAAGCAACAGCTGCCAAGACTCCACGGATACAGAGAGCAACGCGGAGGAA
CAGCGCAGCGGTCTCATCTACCTAACCAACCACATCACTCCGCATGCGCGCAACGGGCTGGCTC
TCAAGGAGGAGCAGCGCGCCTACGAGGTGCTGAGGGCAGCCTCAGAGAACTCGCAGGACGCCTT
CCGTGTGGTCAGCACGAGTGGTGAGCAGCTGAAGGTGTACAAGTGCGAACACTGCCGCGTGCTC
TTCCTGGATCATGTCATGTACACCATCCACATGGGCTGCCATGGCTTCCGGGATCCCTTTGAGT
GTAACATGTGTGGTTATCACAGCCAGGACAGGTACGAGTTCTCTTCCCACATCACACGGGGGGA
GCATCGCTACCACCTGAGCTAAACCCAGCCAGGCCCCACTGAAGCACAAAGATAGCTGGGCATG
CCTCTTTCCCAGCAGCTGGACCCACGGCGGACAATGTTGGGAGTGGATTTGCAGGCAGCATTTG
TTCTTTTACGTTGGTTGTTTGAGATTTGATTTGCGTTTAGAAGACAAGTTTTTAATGTTAGAGA
CAGGATTCCATTGCATCAGGAACGTTCAGAACACCCATCCTTCTAGACGGTTTTGTTGACTGCT
AGCTGAGATTTCCCTGGTATGTGGCTTCCTAACGCTCTCCCTACCCGCCCCACCCCCAAAACAG
AGCCCGAATCTTCAGAGAAATTAATTAAACAATTACCCAAGTAGGAGCAAGGTGGATTTTTCCC
TAAGCAGAGTTTATACCACAAAGATTCTCCAAGTCCTCCAAAACAGCACAGGGACATCAGCCTG
TGCAGAGACCAGGGCCGAAGGCTGAACTTAGAAAGCTACTATTAGGCCATGTATTGCACGGCAA
TGCGGTGTCGGAACAAGATGTTTGAGGTGCTGAAGGGAAGGGATTGGAGAGCCATGTGGCTCTT
CTTCATTTGCCTGATCACACTCAGCCTCCTGAGGGCTTGATGCCCAGTAAGATGAGCTCACTGC
TCTTGTGATCGTTTTTCTATCAGTTCCGTGCCTTTAATGGCCCCAAAGCTCATCACTGCATTTT
AGAACCCAATCCTGAAATTGAGACCTTGTTTTAAACTTCTGATACTGTAAAACTTCTTGGAAGC
CAAAGCTTTCTTCCAAGCCCCATCCCCAGTTATCTTGGTTCCTGTTCTTCCCTGGGCTGATAGT
TCCGGGACCTGCTATTCCATGAAAACAAGCACAACCCACCCTTCACTTCAACTGAACCCCTGTT
CTGATTATAGCTATGGACTCGGCTGTCTTGATAAATGTCTTTCCCTGCTCTGGA

hide sequence

RefSeq Acc Id:

XM_008770314 ⟹ XP_008768536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,303 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,726 - 86,340,839 (+)	NCBI
Rnor_6.0	14	91,783,038 - 91,867,828 (+)	NCBI

Sequence:

show sequence

GCGCGCCGAGCGGGCCCGGCGCGGGCAAGCGGGCTGCAGCCGCCGGCGGCGCCAGCAGATAATC
TGAAGACAATGGATGTCGATGAGGGTCAAGACATGTCCCAAGTTTCAGGAAAGGAGAGCCCTCC
AGTCAGTGACACTCCGGATGAAGGGGATGAACCCATGCCTGTCCCCGAGGACCTGTCCACCTCT
GGAGCACAGCAGAACTCCAAGAGTGATCGAGGCATGGCCAGTAATGTTAAAGTAGAGACTCAGA
GTGATGAAGAGAATGGGCGTGCCTGTGAAATGAATGGGGAATGTGCAGAGGATTTACGAATGCT
TGATGCCTCAGGAGAGAAAATGAATGGCTCCCACAGGGACCAAGGCAGCACGGCTTTGTCAGGA
GTTGGAGGCATTCGACTTCCTAACGGAAAACTAAAGTGTGATATCTGTGGGATCGTTTGCATCG
GGCCCAATGTGCTCATGGTTCACAAAAGAAGTCATACTGGTGAACGGCCTTTCCAGTGCAACCA
GTGTGGGGCCTCCTTTACCCAGAAAGGCAACCTACTGCGGCACATCAAGCTGCACTCGGGCGAG
AAGCCCTTCAAATGCCATCTCTGCAACTATGCCTGCCGCCGGAGGGACGCCCTCACCGGCCACC
TAAGGACGCACTCCGTTGGTAAGCCTCACAAATGTGGATATTGTGGCCGGAGCTATAAACAGCG
AAGCTCTTTAGAAGAACATAAAGAGCGATGCCACAACTACTTGGAAAGCATGGGCCTCCCGGGC
ATGTACCCAGGAGACAAGTGCCTGTCAGACATGCCCTATGACAGTGCCAACTATGAGAAGGATG
AGATGATGACATCCCACGTGATGGACCAGGCCATCAACAATGCCATTAACTACCTGGGGGCTGA
GTCCCTGCGCCCGTTGGTGCAGACACCCCCTGGTAGCTCCGAGGTGGTGCCGGTCATCAGTTCC
ATGTACCAGCTGCACAAGCCCCCCTCAGACGGCCCACCACGGTCCAACCACTCAGCACAGGACA
GCGCCGTGGAGAACTTGCTGCTGCTGTCCAAGGCCAAGTCCGTGTCATCAGAGCGGGAGGCCTC
CCCAAGCAACAGCTGCCAAGACTCCACGGATACAGAGAGCAACGCGGAGGAACAGCGCAGCGGT
CTCATCTACCTAACCAACCACATCACTCCGCATGCGCGCAACGGGCTGGCTCTCAAGGAGGAGC
AGCGCGCCTACGAGGTGCTGAGGGCAGCCTCAGAGAACTCGCAGGACGCCTTCCGTGTGGTCAG
CACGAGTGGTGAGCAGCTGAAGGTGTACAAGTGCGAACACTGCCGCGTGCTCTTCCTGGATCAT
GTCATGTACACCATCCACATGGGCTGCCATGGCTTCCGGGATCCCTTTGAGTGTAACATGTGTG
GTTATCACAGCCAGGACAGGTACGAGTTCTCTTCCCACATCACACGGGGGGAGCATCGCTACCA
CCTGAGCTAAACCCAGCCAGGCCCCACTGAAGCACAAAGATAGCTGGGCATGCCTCTTTCCCAG
CAGCTGGACCCACGGCGGACAATGTTGGGAGTGGATTTGCAGGCAGCATTTGTTCTTTTACGTT
GGTTGTTTGAGATTTGATTTGCGTTTAGAAGACAAGTTTTTAATGTTAGAGACAGGATTCCATT
GCATCAGGAACGTTCAGAACACCCATCCTTCTAGACGGTTTTGTTGACTGCTAGCTGAGATTTC
CCTGGTATGTGGCTTCCTAACGCTCTCCCTACCCGCCCCACCCCCAAAACAGAGCCCGAATCTT
CAGAGAAATTAATTAAACAATTACCCAAGTAGGAGCAAGGTGGATTTTTCCCTAAGCAGAGTTT
ATACCACAAAGATTCTCCAAGTCCTCCAAAACAGCACAGGGACATCAGCCTGTGCAGAGACCAG
GGCCGAAGGCTGAACTTAGAAAGCTACTATTAGGCCATGTATTGCACGGCAATGCGGTGTCGGA
ACAAGATGTTTGAGGTGCTGAAGGGAAGGGATTGGAGAGCCATGTGGCTCTTCTTCATTTGCCT
GATCACACTCAGCCTCCTGAGGGCTTGATGCCCAGTAAGATGAGCTCACTGCTCTTGTGATCGT
TTTTCTATCAGTTCCGTGCCTTTAATGGCCCCAAAGCTCATCACTGCATTTTAGAACCCAATCC
TGAAATTGAGACCTTGTTTTAAACTTCTGATACTGTAAAACTTCTTGGAAGCCAAAGCTTTCTT
CCAAGCCCCATCCCCAGTTATCTTGGTTCCTGTTCTTCCCTGGGCTGATAGTTCCGGGACCTGC
TATTCCATGAAAACAAGCACAACCCACCCTTCACTTCAACTGAACCCCTGTTCTGATTATAGCT
ATGGACTCGGCTGTCTTGATAAATGTCTTTCCCTGCTCTGGA

hide sequence

RefSeq Acc Id:

XM_008770315 ⟹ XP_008768537

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,309 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,726 - 86,340,839 (+)	NCBI
Rnor_6.0	14	91,783,039 - 91,867,828 (+)	NCBI

Sequence:

show sequence

CGCGCCGAGCGGGCCCGGCGCGGGCAAGCGGGCTGCAGCCGCCGGCGGCGCCAGCAGATAATCT
GAAGACAATGGATGTCGATGAGGGTCAAGACATGTCCCAAGTTTCAGGAAAGGAGAGCCCTCCA
GTCAGTGACACTCCGGATGAAGGGGATGAACCCATGCCTGTCCCCGAGGACCTGTCCACCTCTG
GAGCACAGCAGAACTCCAAGAGTGATCGAGGCATGGGTGAACGGCCTTTCCAGTGCAACCAGTG
TGGGGCCTCCTTTACCCAGAAAGGCAACCTACTGCGGCACATCAAGCTGCACTCGGGCGAGAAG
CCCTTCAAATGCCATCTCTGCAACTATGCCTGCCGCCGGAGGGACGCCCTCACCGGCCACCTAA
GGACGCACTCCGTTGGTAAGCCTCACAAATGTGGATATTGTGGCCGGAGCTATAAACAGCGAAG
CTCTTTAGAAGAACATAAAGAGCGATGCCACAACTACTTGGAAAGCATGGGCCTCCCGGGCATG
TACCCAGTCATTAAGGAAGAAACTAACCACAGCGAAATGGCAGAGGACCTGTGCAAGATAGGAG
CAGAGAGGTCCCTTGTTCTGGACAGGCTGGCCAGCAACGTCGCCAAACGTAAGAGCTCTATGCC
TCAGAAATTTCTTGGAGACAAGTGCCTGTCAGACATGCCCTATGACAGTGCCAACTATGAGAAG
GATGAGATGATGACATCCCACGTGATGGACCAGGCCATCAACAATGCCATTAACTACCTGGGGG
CTGAGTCCCTGCGCCCGTTGGTGCAGACACCCCCTGGTAGCTCCGAGGTGGTGCCGGTCATCAG
TTCCATGTACCAGCTGCACAAGCCCCCCTCAGACGGCCCACCACGGTCCAACCACTCAGCACAG
GACAGCGCCGTGGAGAACTTGCTGCTGCTGTCCAAGGCCAAGTCCGTGTCATCAGAGCGGGAGG
CCTCCCCAAGCAACAGCTGCCAAGACTCCACGGATACAGAGAGCAACGCGGAGGAACAGCGCAG
CGGTCTCATCTACCTAACCAACCACATCACTCCGCATGCGCGCAACGGGCTGGCTCTCAAGGAG
GAGCAGCGCGCCTACGAGGTGCTGAGGGCAGCCTCAGAGAACTCGCAGGACGCCTTCCGTGTGG
TCAGCACGAGTGGTGAGCAGCTGAAGGTGTACAAGTGCGAACACTGCCGCGTGCTCTTCCTGGA
TCATGTCATGTACACCATCCACATGGGCTGCCATGGCTTCCGGGATCCCTTTGAGTGTAACATG
TGTGGTTATCACAGCCAGGACAGGTACGAGTTCTCTTCCCACATCACACGGGGGGAGCATCGCT
ACCACCTGAGCTAAACCCAGCCAGGCCCCACTGAAGCACAAAGATAGCTGGGCATGCCTCTTTC
CCAGCAGCTGGACCCACGGCGGACAATGTTGGGAGTGGATTTGCAGGCAGCATTTGTTCTTTTA
CGTTGGTTGTTTGAGATTTGATTTGCGTTTAGAAGACAAGTTTTTAATGTTAGAGACAGGATTC
CATTGCATCAGGAACGTTCAGAACACCCATCCTTCTAGACGGTTTTGTTGACTGCTAGCTGAGA
TTTCCCTGGTATGTGGCTTCCTAACGCTCTCCCTACCCGCCCCACCCCCAAAACAGAGCCCGAA
TCTTCAGAGAAATTAATTAAACAATTACCCAAGTAGGAGCAAGGTGGATTTTTCCCTAAGCAGA
GTTTATACCACAAAGATTCTCCAAGTCCTCCAAAACAGCACAGGGACATCAGCCTGTGCAGAGA
CCAGGGCCGAAGGCTGAACTTAGAAAGCTACTATTAGGCCATGTATTGCACGGCAATGCGGTGT
CGGAACAAGATGTTTGAGGTGCTGAAGGGAAGGGATTGGAGAGCCATGTGGCTCTTCTTCATTT
GCCTGATCACACTCAGCCTCCTGAGGGCTTGATGCCCAGTAAGATGAGCTCACTGCTCTTGTGA
TCGTTTTTCTATCAGTTCCGTGCCTTTAATGGCCCCAAAGCTCATCACTGCATTTTAGAACCCA
ATCCTGAAATTGAGACCTTGTTTTAAACTTCTGATACTGTAAAACTTCTTGGAAGCCAAAGCTT
TCTTCCAAGCCCCATCCCCAGTTATCTTGGTTCCTGTTCTTCCCTGGGCTGATAGTTCCGGGAC
CTGCTATTCCATGAAAACAAGCACAACCCACCCTTCACTTCAACTGAACCCCTGTTCTGATTAT
AGCTATGGACTCGGCTGTCTTGATAAATGTCTTTCCCTGCTCTGGA

hide sequence

RefSeq Acc Id:

XM_008770316 ⟹ XP_008768538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,296 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,726 - 86,340,839 (+)	NCBI
Rnor_6.0	14	91,783,038 - 91,867,828 (+)	NCBI

Sequence:

show sequence

GCGCGCCGAGCGGGCCCGGCGCGGGCAAGCGGGCTGCAGCCGCCGGCGGCGCCAGCAGATAATC
TGAAGACAATGGATGTCGATGAGGGTCAAGACATGTCCCAAGTTTCAGGAAAGGAGAGCCCTCC
AGTCAGTGACACTCCGGATGAAGGGGATGAACCCATGCCTGTCCCCGAGGACCTGTCCACCTCT
GGAGCACAGCAGAACTCCAAGAGTGATCGAGGCATGGCCAGTAATGTTAAAGTAGAGACTCAGA
GTGATGAAGAGAATGGGCGTGCCTGTGAAATGAATGGGGAATGTGCAGAGGATTTACGAATGCT
TGATGCCTCAGGAGAGAAAATGAATGGCTCCCACAGGGACCAAGGCAGCACGGCTTTGTCAGGA
GTTGGAGGCATTCGACTTCCTAACGGAAAACTAAAGTGTGATATCTGTGGGATCGTTTGCATCG
GGCCCAATGTGCTCATGGTTCACAAAAGAAGTCATACTGGTGAACGGCCTTTCCAGTGCAACCA
GTGTGGGGCCTCCTTTACCCAGAAAGGCAACCTACTGCGGCACATCAAGCTGCACTCGGGCGAG
AAGCCCTTCAAATGCCATCTCTGCAACTATGCCTGCCGCCGGAGGGACGCCCTCACCGGCCACC
TAAGGACGCACTCCGGAGACAAGTGCCTGTCAGACATGCCCTATGACAGTGCCAACTATGAGAA
GGATGAGATGATGACATCCCACGTGATGGACCAGGCCATCAACAATGCCATTAACTACCTGGGG
GCTGAGTCCCTGCGCCCGTTGGTGCAGACACCCCCTGGTAGCTCCGAGGTGGTGCCGGTCATCA
GTTCCATGTACCAGCTGCACAAGCCCCCCTCAGACGGCCCACCACGGTCCAACCACTCAGCACA
GGACAGCGCCGTGGAGAACTTGCTGCTGCTGTCCAAGGCCAAGTCCGTGTCATCAGAGCGGGAG
GCCTCCCCAAGCAACAGCTGCCAAGACTCCACGGATACAGAGAGCAACGCGGAGGAACAGCGCA
GCGGTCTCATCTACCTAACCAACCACATCACTCCGCATGCGCGCAACGGGCTGGCTCTCAAGGA
GGAGCAGCGCGCCTACGAGGTGCTGAGGGCAGCCTCAGAGAACTCGCAGGACGCCTTCCGTGTG
GTCAGCACGAGTGGTGAGCAGCTGAAGGTGTACAAGTGCGAACACTGCCGCGTGCTCTTCCTGG
ATCATGTCATGTACACCATCCACATGGGCTGCCATGGCTTCCGGGATCCCTTTGAGTGTAACAT
GTGTGGTTATCACAGCCAGGACAGGTACGAGTTCTCTTCCCACATCACACGGGGGGAGCATCGC
TACCACCTGAGCTAAACCCAGCCAGGCCCCACTGAAGCACAAAGATAGCTGGGCATGCCTCTTT
CCCAGCAGCTGGACCCACGGCGGACAATGTTGGGAGTGGATTTGCAGGCAGCATTTGTTCTTTT
ACGTTGGTTGTTTGAGATTTGATTTGCGTTTAGAAGACAAGTTTTTAATGTTAGAGACAGGATT
CCATTGCATCAGGAACGTTCAGAACACCCATCCTTCTAGACGGTTTTGTTGACTGCTAGCTGAG
ATTTCCCTGGTATGTGGCTTCCTAACGCTCTCCCTACCCGCCCCACCCCCAAAACAGAGCCCGA
ATCTTCAGAGAAATTAATTAAACAATTACCCAAGTAGGAGCAAGGTGGATTTTTCCCTAAGCAG
AGTTTATACCACAAAGATTCTCCAAGTCCTCCAAAACAGCACAGGGACATCAGCCTGTGCAGAG
ACCAGGGCCGAAGGCTGAACTTAGAAAGCTACTATTAGGCCATGTATTGCACGGCAATGCGGTG
TCGGAACAAGATGTTTGAGGTGCTGAAGGGAAGGGATTGGAGAGCCATGTGGCTCTTCTTCATT
TGCCTGATCACACTCAGCCTCCTGAGGGCTTGATGCCCAGTAAGATGAGCTCACTGCTCTTGTG
ATCGTTTTTCTATCAGTTCCGTGCCTTTAATGGCCCCAAAGCTCATCACTGCATTTTAGAACCC
AATCCTGAAATTGAGACCTTGTTTTAAACTTCTGATACTGTAAAACTTCTTGGAAGCCAAAGCT
TTCTTCCAAGCCCCATCCCCAGTTATCTTGGTTCCTGTTCTTCCCTGGGCTGATAGTTCCGGGA
CCTGCTATTCCATGAAAACAAGCACAACCCACCCTTCACTTCAACTGAACCCCTGTTCTGATTA
TAGCTATGGACTCGGCTGTCTTGATAAATGTCTTTCCCTGCTCTGGA

hide sequence

RefSeq Acc Id:

XM_008770318 ⟹ XP_008768540

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,291 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,725 - 86,340,839 (+)	NCBI
Rnor_6.0	14	91,783,037 - 91,867,828 (+)	NCBI

Sequence:

show sequence

GGCGCGCCGAGCGGGCCCGGCGCGGGCAAGCGGGCTGCAGCCGCCGGCGGCGCCAGCAGATAAT
CTGAAGACAATGGATGTCGATGAGGGTCAAGACATGTCCCAAGTTTCAGGAAAGGAGAGCCCTC
CAGTCAGTGACACTCCGGATGAAGGGGATGAACCCATGCCTGTCCCCGAGGACCTGTCCACCTC
TGGAGCACAGCAGAACTCCAAGAGTGATCGAGGCATGGGTGAACGGCCTTTCCAGTGCAACCAG
TGTGGGGCCTCCTTTACCCAGAAAGGCAACCTACTGCGGCACATCAAGCTGCACTCGGGCGAGA
AGCCCTTCAAATGCCATCTCTGCAACTATGCCTGCCGCCGGAGGGACGCCCTCACCGGCCACCT
AAGGACGCACTCCGTCATTAAGGAAGAAACTAACCACAGCGAAATGGCAGAGGACCTGTGCAAG
ATAGGAGCAGAGAGGTCCCTTGTTCTGGACAGGCTGGCCAGCAACGTCGCCAAACGTAAGAGCT
CTATGCCTCAGAAATTTCTTGGAGACAAGTGCCTGTCAGACATGCCCTATGACAGTGCCAACTA
TGAGAAGGATGAGATGATGACATCCCACGTGATGGACCAGGCCATCAACAATGCCATTAACTAC
CTGGGGGCTGAGTCCCTGCGCCCGTTGGTGCAGACACCCCCTGGTAGCTCCGAGGTGGTGCCGG
TCATCAGTTCCATGTACCAGCTGCACAAGCCCCCCTCAGACGGCCCACCACGGTCCAACCACTC
AGCACAGGACAGCGCCGTGGAGAACTTGCTGCTGCTGTCCAAGGCCAAGTCCGTGTCATCAGAG
CGGGAGGCCTCCCCAAGCAACAGCTGCCAAGACTCCACGGATACAGAGAGCAACGCGGAGGAAC
AGCGCAGCGGTCTCATCTACCTAACCAACCACATCACTCCGCATGCGCGCAACGGGCTGGCTCT
CAAGGAGGAGCAGCGCGCCTACGAGGTGCTGAGGGCAGCCTCAGAGAACTCGCAGGACGCCTTC
CGTGTGGTCAGCACGAGTGGTGAGCAGCTGAAGGTGTACAAGTGCGAACACTGCCGCGTGCTCT
TCCTGGATCATGTCATGTACACCATCCACATGGGCTGCCATGGCTTCCGGGATCCCTTTGAGTG
TAACATGTGTGGTTATCACAGCCAGGACAGGTACGAGTTCTCTTCCCACATCACACGGGGGGAG
CATCGCTACCACCTGAGCTAAACCCAGCCAGGCCCCACTGAAGCACAAAGATAGCTGGGCATGC
CTCTTTCCCAGCAGCTGGACCCACGGCGGACAATGTTGGGAGTGGATTTGCAGGCAGCATTTGT
TCTTTTACGTTGGTTGTTTGAGATTTGATTTGCGTTTAGAAGACAAGTTTTTAATGTTAGAGAC
AGGATTCCATTGCATCAGGAACGTTCAGAACACCCATCCTTCTAGACGGTTTTGTTGACTGCTA
GCTGAGATTTCCCTGGTATGTGGCTTCCTAACGCTCTCCCTACCCGCCCCACCCCCAAAACAGA
GCCCGAATCTTCAGAGAAATTAATTAAACAATTACCCAAGTAGGAGCAAGGTGGATTTTTCCCT
AAGCAGAGTTTATACCACAAAGATTCTCCAAGTCCTCCAAAACAGCACAGGGACATCAGCCTGT
GCAGAGACCAGGGCCGAAGGCTGAACTTAGAAAGCTACTATTAGGCCATGTATTGCACGGCAAT
GCGGTGTCGGAACAAGATGTTTGAGGTGCTGAAGGGAAGGGATTGGAGAGCCATGTGGCTCTTC
TTCATTTGCCTGATCACACTCAGCCTCCTGAGGGCTTGATGCCCAGTAAGATGAGCTCACTGCT
CTTGTGATCGTTTTTCTATCAGTTCCGTGCCTTTAATGGCCCCAAAGCTCATCACTGCATTTTA
GAACCCAATCCTGAAATTGAGACCTTGTTTTAAACTTCTGATACTGTAAAACTTCTTGGAAGCC
AAAGCTTTCTTCCAAGCCCCATCCCCAGTTATCTTGGTTCCTGTTCTTCCCTGGGCTGATAGTT
CCGGGACCTGCTATTCCATGAAAACAAGCACAACCCACCCTTCACTTCAACTGAACCCCTGTTC
TGATTATAGCTATGGACTCGGCTGTCTTGATAAATGTCTTTCCCTGCTCTGGA

hide sequence

RefSeq Acc Id:

XM_039092062 ⟹ XP_038947990

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,302 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,726 - 86,340,839 (+)	NCBI

RefSeq Acc Id:

XM_039092063 ⟹ XP_038947991

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,288 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,725 - 86,340,839 (+)	NCBI

RefSeq Acc Id:

XM_039092065 ⟹ XP_038947993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,295 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,726 - 86,340,839 (+)	NCBI

RefSeq Acc Id:

XM_039092066 ⟹ XP_038947994

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,252 - 90,556,522 (+)	NCBI
mRatBN7.2	14	86,255,725 - 86,340,839 (+)	NCBI

RefSeq Acc Id:

XM_063273233 ⟹ XP_063129303

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,295 - 90,556,522 (+)	NCBI

RefSeq Acc Id:

XM_063273234 ⟹ XP_063129304

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	90,469,285 - 90,556,522 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100707	(Get FASTA)	NCBI Sequence Viewer
	XP_006251553	(Get FASTA)	NCBI Sequence Viewer
	XP_006251554	(Get FASTA)	NCBI Sequence Viewer
	XP_006251556	(Get FASTA)	NCBI Sequence Viewer
	XP_008768535	(Get FASTA)	NCBI Sequence Viewer
	XP_008768536	(Get FASTA)	NCBI Sequence Viewer
	XP_008768537	(Get FASTA)	NCBI Sequence Viewer
	XP_008768538	(Get FASTA)	NCBI Sequence Viewer
	XP_008768540	(Get FASTA)	NCBI Sequence Viewer
	XP_038947990	(Get FASTA)	NCBI Sequence Viewer
	XP_038947991	(Get FASTA)	NCBI Sequence Viewer
	XP_038947993	(Get FASTA)	NCBI Sequence Viewer
	XP_038947994	(Get FASTA)	NCBI Sequence Viewer
	XP_063129303	(Get FASTA)	NCBI Sequence Viewer
	XP_063129304	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL76057	(Get FASTA)	NCBI Sequence Viewer
	EDL76058	(Get FASTA)	NCBI Sequence Viewer
	EDL76059	(Get FASTA)	NCBI Sequence Viewer
	EDL76060	(Get FASTA)	NCBI Sequence Viewer
	EDL76061	(Get FASTA)	NCBI Sequence Viewer
	EDL76062	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005902.6
	ENSRNOP00000069446.2
	ENSRNOP00000082686
	ENSRNOP00000082686.1
	ENSRNOP00000086084.1
	ENSRNOP00000088172
	ENSRNOP00000088172.1

RefSeq Acc Id:

NP_001100707 ⟸ NM_001107237

- UniProtKB:

A6KJA9 (UniProtKB/TrEMBL), A0A8I5ZVE4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQNSKSDRGMGERPFQCNQCGA
SFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRTHSVGKPHKCGYCGRSYKQRSSL
EEHKERCHNYLESMGLPGMYPVIKEETNHSEMAEDLCKIGAERSLVLDRLASNVAKRKSSMPQK
FLGDKCLSDMPYDSANYEKDEMMTSHVMDQAINNAINYLGAESLRPLVQTPPGSSEVVPVISSM
YQLHKPPSDGPPRSNHSAQDSAVENLLLLSKAKSVSSEREASPSNSCQDSTDTESNAEEQRSGL
IYLTNHITPHARNGLALKEEQRAYEVLRAASENSQDAFRVVSTSGEQLKVYKCEHCRVLFLDHV
MYTIHMGCHGFRDPFECNMCGYHSQDRYEFSSHITRGEHRYHLS

hide sequence

RefSeq Acc Id:	XP_006251556 ⟸ XM_006251494
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2JVD9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQNSKSDRGMASNVKVETQSDE ENGRACEMNGECAEDLRMLDASGEKMNGSHRDQGSTALSGVGGIRLPNGKLKCDICGIVCIGPN VLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRT HSVGKPHKCGYCGRSYKQRSSLEEHKERCHNYLESMGLPGMYPVIKEETNHSEMAEDLCKIGAE RSLVLDRLASNVAKRKSSMPQKFLGDKCLSDMPYDSANYEKDEMMTSHVMDQAINNAINYLGAE SLRPLVQTPPGSSEVVPVISSMYQLHKPPSDGPPRSNHSAQDSAVENLLLLSKAKSVSSEREAS PSNSCQDSTDTESNAEEQRSGLIYLTNHITPHARNGLALKEEQRAYEVLRAASENSQDAFRVVS TSGEQLKVYKCEHCRVLFLDHVMYTIHMGCHGFRDPFECNMCGYHSQDRYEFSSHITRGEHRYH LS hide sequence

RefSeq Acc Id:	XP_006251553 ⟸ XM_006251491
- Peptide Label:	isoform X5
- UniProtKB:	A6KJA7 (UniProtKB/TrEMBL), D4A9W4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQNSKSDRGMASNVKVETQSDE ENGRACEMNGECAEDLRMLDASGEKMNGSHRDQGSTALSGVGGIRLPNGKLKCDICGIVCIGPN VLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRT HSVGKPHKCGYCGRSYKQRSSLEEHKERCHNYLESMGLPGMYPVIKEETNHSEMAEDLCKIGAE RSLVLDRLASNVAKRKSSMPQKFLGDKCLSDMPYDSANYEKDEMMTSHVMDQAINNAINYLGAE SLRPLVQTPPGSSEVVPVISSMYQLHKPPSDGPPRSNHSAQDSAVENLLLLSKAKSVSSEREAS PSNSCQDSTDTESNAEEQRSGLIYLTNHITPHARNGLALKEEQRAYEVLRAASENSQDAFRVVS TSGEQLKVYKCEHCRVLFLDHVMYTIHMGCHGFRDPFECNMCGYHSQDRYEFSSHITRGEHRYH LS hide sequence

RefSeq Acc Id:	XP_006251554 ⟸ XM_006251492
- Peptide Label:	isoform X5
- UniProtKB:	A6KJA7 (UniProtKB/TrEMBL), D4A9W4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQNSKSDRGMASNVKVETQSDE ENGRACEMNGECAEDLRMLDASGEKMNGSHRDQGSTALSGVGGIRLPNGKLKCDICGIVCIGPN VLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRT HSVGKPHKCGYCGRSYKQRSSLEEHKERCHNYLESMGLPGMYPVIKEETNHSEMAEDLCKIGAE RSLVLDRLASNVAKRKSSMPQKFLGDKCLSDMPYDSANYEKDEMMTSHVMDQAINNAINYLGAE SLRPLVQTPPGSSEVVPVISSMYQLHKPPSDGPPRSNHSAQDSAVENLLLLSKAKSVSSEREAS PSNSCQDSTDTESNAEEQRSGLIYLTNHITPHARNGLALKEEQRAYEVLRAASENSQDAFRVVS TSGEQLKVYKCEHCRVLFLDHVMYTIHMGCHGFRDPFECNMCGYHSQDRYEFSSHITRGEHRYH LS hide sequence

RefSeq Acc Id:

XP_008768536 ⟸ XM_008770314

- Peptide Label:

isoform X4

- Sequence:

show sequence

MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQNSKSDRGMASNVKVETQSDE
ENGRACEMNGECAEDLRMLDASGEKMNGSHRDQGSTALSGVGGIRLPNGKLKCDICGIVCIGPN
VLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRT
HSVGKPHKCGYCGRSYKQRSSLEEHKERCHNYLESMGLPGMYPGDKCLSDMPYDSANYEKDEMM
TSHVMDQAINNAINYLGAESLRPLVQTPPGSSEVVPVISSMYQLHKPPSDGPPRSNHSAQDSAV
ENLLLLSKAKSVSSEREASPSNSCQDSTDTESNAEEQRSGLIYLTNHITPHARNGLALKEEQRA
YEVLRAASENSQDAFRVVSTSGEQLKVYKCEHCRVLFLDHVMYTIHMGCHGFRDPFECNMCGYH
SQDRYEFSSHITRGEHRYHLS

hide sequence

RefSeq Acc Id:

XP_008768535 ⟸ XM_008770313

- Peptide Label:

isoform X3

- Sequence:

show sequence

MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQNSKSDRGMASNVKVETQSDE
ENGRACEMNGECAEDLRMLDASGEKMNGSHRDQGSTALSGVGGIRLPNGKLKCDICGIVCIGPN
VLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRT
HSVIKEETNHSEMAEDLCKIGAERSLVLDRLASNVAKRKSSMPQKFLGDKCLSDMPYDSANYEK
DEMMTSHVMDQAINNAINYLGAESLRPLVQTPPGSSEVVPVISSMYQLHKPPSDGPPRSNHSAQ
DSAVENLLLLSKAKSVSSEREASPSNSCQDSTDTESNAEEQRSGLIYLTNHITPHARNGLALKE
EQRAYEVLRAASENSQDAFRVVSTSGEQLKVYKCEHCRVLFLDHVMYTIHMGCHGFRDPFECNM
CGYHSQDRYEFSSHITRGEHRYHLS

hide sequence

RefSeq Acc Id:

XP_008768538 ⟸ XM_008770316

- Peptide Label:

isoform X8

- Sequence:

show sequence

MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQNSKSDRGMASNVKVETQSDE
ENGRACEMNGECAEDLRMLDASGEKMNGSHRDQGSTALSGVGGIRLPNGKLKCDICGIVCIGPN
VLMVHKRSHTGERPFQCNQCGASFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRT
HSGDKCLSDMPYDSANYEKDEMMTSHVMDQAINNAINYLGAESLRPLVQTPPGSSEVVPVISSM
YQLHKPPSDGPPRSNHSAQDSAVENLLLLSKAKSVSSEREASPSNSCQDSTDTESNAEEQRSGL
IYLTNHITPHARNGLALKEEQRAYEVLRAASENSQDAFRVVSTSGEQLKVYKCEHCRVLFLDHV
MYTIHMGCHGFRDPFECNMCGYHSQDRYEFSSHITRGEHRYHLS

hide sequence

RefSeq Acc Id:	XP_008768537 ⟸ XM_008770315
- Peptide Label:	isoform X7
- UniProtKB:	A6KJA9 (UniProtKB/TrEMBL), A0A8I5ZVE4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQNSKSDRGMGERPFQCNQCGA SFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRTHSVGKPHKCGYCGRSYKQRSSL EEHKERCHNYLESMGLPGMYPVIKEETNHSEMAEDLCKIGAERSLVLDRLASNVAKRKSSMPQK FLGDKCLSDMPYDSANYEKDEMMTSHVMDQAINNAINYLGAESLRPLVQTPPGSSEVVPVISSM YQLHKPPSDGPPRSNHSAQDSAVENLLLLSKAKSVSSEREASPSNSCQDSTDTESNAEEQRSGL IYLTNHITPHARNGLALKEEQRAYEVLRAASENSQDAFRVVSTSGEQLKVYKCEHCRVLFLDHV MYTIHMGCHGFRDPFECNMCGYHSQDRYEFSSHITRGEHRYHLS hide sequence

RefSeq Acc Id:

XP_008768540 ⟸ XM_008770318

- Peptide Label:

isoform X10

- Sequence:

show sequence

MDVDEGQDMSQVSGKESPPVSDTPDEGDEPMPVPEDLSTSGAQQNSKSDRGMGERPFQCNQCGA
SFTQKGNLLRHIKLHSGEKPFKCHLCNYACRRRDALTGHLRTHSVIKEETNHSEMAEDLCKIGA
ERSLVLDRLASNVAKRKSSMPQKFLGDKCLSDMPYDSANYEKDEMMTSHVMDQAINNAINYLGA
ESLRPLVQTPPGSSEVVPVISSMYQLHKPPSDGPPRSNHSAQDSAVENLLLLSKAKSVSSEREA
SPSNSCQDSTDTESNAEEQRSGLIYLTNHITPHARNGLALKEEQRAYEVLRAASENSQDAFRVV
STSGEQLKVYKCEHCRVLFLDHVMYTIHMGCHGFRDPFECNMCGYHSQDRYEFSSHITRGEHRY
HLS

hide sequence

RefSeq Acc Id:

ENSRNOP00000069446 ⟸ ENSRNOT00000080753

RefSeq Acc Id:

ENSRNOP00000005902 ⟸ ENSRNOT00000005902

RefSeq Acc Id:	XP_038947991 ⟸ XM_039092063
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038947994 ⟸ XM_039092066
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_038947990 ⟸ XM_039092062
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038947993 ⟸ XM_039092065
- Peptide Label:	isoform X9

RefSeq Acc Id:

ENSRNOP00000082686 ⟸ ENSRNOT00000094159

RefSeq Acc Id:

ENSRNOP00000088172 ⟸ ENSRNOT00000113896

RefSeq Acc Id:

ENSRNOP00000086084 ⟸ ENSRNOT00000097538

RefSeq Acc Id:	XP_063129304 ⟸ XM_063273234
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063129303 ⟸ XM_063273233
- Peptide Label:	isoform X11

Protein Domains

C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2JVD9-F1-model_v2	AlphaFold	A0A0G2JVD9	1-514	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699494

Promoter ID:

EPDNEW_R10016

Type:

initiation region

Name:

Ikzf1_1

Description:

IKAROS family zinc finger 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	91,783,570 - 91,783,630	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562979	AgrOrtholog
BioCyc Gene	G2FUF-14993	BioCyc
Ensembl Genes	ENSRNOG00000004444	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005902.7	UniProtKB/TrEMBL
	ENSRNOT00000080753.2	UniProtKB/TrEMBL
	ENSRNOT00000094159	ENTREZGENE
	ENSRNOT00000094159.1	UniProtKB/TrEMBL
	ENSRNOT00000097538.1	UniProtKB/TrEMBL
	ENSRNOT00000113896.1	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
InterPro	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:305501	UniProtKB/TrEMBL
NCBI Gene	305501	ENTREZGENE
PANTHER	DNA-BINDING PROTEIN IKAROS	UniProtKB/TrEMBL
	FI03704P-RELATED	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	zf-C2H2	UniProtKB/TrEMBL
PhenoGen	Ikzf1	PhenoGen
PROSITE	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004444	RatGTEx
SMART	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2JVD9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5ZVE4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A4M7_RAT	UniProtKB/TrEMBL
	A0A8I6A5Y7_RAT	UniProtKB/TrEMBL
	A6KJA7	ENTREZGENE, UniProtKB/TrEMBL
	A6KJA9	ENTREZGENE, UniProtKB/TrEMBL
	D4A9W4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-11-06	Ikzf1	IKAROS family zinc finger 1	RGD1562979	similar to DNA-binding protein Ikaros form 1 - mouse	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1562979	similar to DNA-binding protein Ikaros form 1 - mouse	RGD1562979_predicted	similar to DNA-binding protein Ikaros form 1 - mouse (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562979_predicted	similar to DNA-binding protein Ikaros form 1 - mouse (predicted)	LOC305501	similar to DNA-binding protein Ikaros form 1 - mouse	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC305501	similar to DNA-binding protein Ikaros form 1 - mouse			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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