Epfw11 QTL Report (Rattus norvegicus) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
QTL Registration

QTL: Epfw11 (Epididymal fat weight QTL 11) Rattus norvegicus

Symbol: Epfw11
Name: Epididymal fat weight QTL 11
RGD ID: 9589034
Previously known as: percentage of epididymal fat
Trait: epididymal fat pad mass   (VT:0010421)    
Measurement Type: epididymal fat pad weight to body weight ratio   (CMO:0000658)    
LOD Score: 6.0
P Value: 0.001
Variance: 8.8
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81459,848,686 - 104,848,686RGD_MAPPER_PIPELINE
mRatBN7.21455,624,247 - 100,624,247RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01460,980,905 - 105,980,905RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01461,668,643 - 106,668,643RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41461,376,259 - 106,376,259RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: F344/IcoCrlf LOU/NimrOlaHsd 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw11Ratabdominal obesity-metabolic syndrome  IAGP 8694157 RGD 
Epfw11RatWeight Gain  IAGP 8694157 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw11Ratincreased body weight  IDA 8694157 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw11Ratepididymal fat pad weight to body weight ratio  IDA 8694157 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw11Ratcontrol condition  IDA 8694157 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw11Ratdigital column scale  IDA 8694157 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw11RatF344/IcoCrlf  IEA 8694157 RGD 
Epfw11RatLOU/NimrOlaHsd  IEA 8694157 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Epfw11Ratepididymal fat pad mass  IDA 8694157 RGD 


#
Reference Title
Reference Citation
1. Quantitative Trait Loci Influencing Abdominal Fat Deposition and Functional Variability of the HPA Axis in the Rat. Marissal-Arvy N, etal., Horm Metab Res. 2014 Jul 8.


1 to 20 of 536 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41257153Cops8-ps3COP9 signalosome subunit 8, pseudogene 2145576474855765405Rat
41359523Rps2-ps20ribosomal protein S2, pseudogene 20145593262755934118Rat
40999201LOC120096738U6 spliceosomal RNA145629855156298654Rat
1562755Rpl23al5ribosomal protein L23A like 5145656623856572088Rat
41217372Cfl1-ps6cofilin 1, pseudogene 6145674964356750117Rat
1304641Stim2stromal interaction molecule 2145687842857004405Rat
41116190LOC120096843U2 spliceosomal RNA145695727456957478Rat
1304958Tbc1d19TBC1 domain family, member 19145708430557200221Rat
2289Cckarcholecystokinin A receptor145729239757300747Rat
7543920LOC102552214uncharacterized LOC102552214145732206057326658Rat
1593096Rbpjrecombination signal binding protein for immunoglobulin kappa J region145733849357523330Rat
2320504LOC10036125960S ribosomal protein L13-like145763235857633066Rat
1565192Smim20small integral membrane protein 20145771130457722681Rat
1562860Sel1l3SEL1L family member 3145777551557882076Rat
620889Slc34a2solute carrier family 34 member 2145791093157930236Rat
41233465LOC120096615uncharacterized LOC120096615145793043557947798Rat
2320358Eif4e2-ps1eukaryotic translation initiation factor 4E family member 2, pseudogene 1145807814558079340Rat
1306572Anapc4anaphase promoting complex subunit 4145812599558159253Rat
1311414Zcchc4zinc finger CCHC-type containing 4145816546758207071Rat
1359515Pi4k2bphosphatidylinositol 4-kinase type 2 beta145822179058248716Rat

1 to 20 of 536 rows
1 to 20 of 717 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
10102D14Mco2289147546949375469784Ratregion
10102D14Mco2289147546949375470354Ratregion
10102D14Mco2289147546975275469784Ratregion
10488D14Mgh8116147248920772489324Ratregion
10773D14Mit10264148205747182057735Ratregion
11086D14Mgh1105148068483380684938Ratregion
33965D14Mit15193148361068083610873Ratregion
34345D14Mgh2134147351328073513414Ratregion
34616D14Mit16137148082812980828266Ratregion
36299D14Rat20155148120475181204906Ratregion
36307D14Rat21131149119526891195399Ratregion
37230D14Rat64207146361897163619178Ratregion
37306DXRat46269149680326196803529Ratregion
37328D14Rat61238146448149264481734Ratregion
37426D14Rat62221146381613763816358Ratregion
36864D14Rat28141147262099372621134Ratregion
37098D14Rat26222146502676965026991Ratregion
37660D14Rat49163149174233591742498Ratregion
37788D14Rat37240147580672875806970Ratregion
37828D14Rat39246147250854172508789Ratregion
1 to 20 of 717 rows

Peak: (D14Rat91)
Rat AssemblyChrPosition (strand)Source
GRCr81482,348,605 - 82,348,767 (+)Marker Load Pipeline
mRatBN7.21478,124,166 - 78,124,328 (+)MAPPER
Rnor_6.01483,480,825 - 83,480,986NCBI
Rnor_5.01484,168,563 - 84,168,724UniSTS
RGSC_v3.41483,876,178 - 83,876,340RGD
RGSC_v3.41483,876,179 - 83,876,340UniSTS
RGSC_v3.11483,886,458 - 83,886,619RGD
Celera1477,039,332 - 77,039,491UniSTS
RH 3.4 Map14528.5UniSTS
RH 3.4 Map14528.5RGD
RH 2.0 Map14689.6RGD
SHRSP x BN Map1441.7599RGD


1 to 10 of 32 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat

1 to 10 of 32 rows


Note Type Note Reference
qtl_general confidence interval 1.9-107.7 Mb 8694157
qtl_general number of animals used: 93 F2 males and 94 F2 females 8694157
qtl_general measurement method: at the end of the HPA axis function experiment, body weight was taken; epididymal fat was removed and weighed and percentage was calculated 8694157
qtl_general software package used: MultiQTL software 8694157
qtl_general an additional peak at D14Rat95 with confidence interval 68.9-112.2 Mb was observed 8694157