Gapdh-ps102 (Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 102) - Rat Genome Database

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Gene: Gapdh-ps102 (Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 102) Rattus norvegicus
Analyze
Symbol: Gapdh-ps102
Name: Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 102
RGD ID: 1561286
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC364200; RGD1561286; similar to glyceraldehyde-3-phosphate dehydrogenase
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81492,222,833 - 92,223,925 (+)NCBIGRCr8
mRatBN7.21488,009,301 - 88,010,396 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01493,494,150 - 93,495,283 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01493,281,956 - 93,283,072 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41494,346,171 - 94,347,263 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1487,136,170 - 87,137,303 (+)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Gapdh-ps102
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14963 BioCyc
NCBI Gene 364200 ENTREZGENE
PhenoGen Gapdh-ps102 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Gapdh-ps102  Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 102  RGD1561286  similar to glyceraldehyde-3-phosphate dehydrogenase  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1561286  similar to glyceraldehyde-3-phosphate dehydrogenase   RGD1561286_predicted  similar to glyceraldehyde-3-phosphate dehydrogenase (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1561286_predicted  similar to glyceraldehyde-3-phosphate dehydrogenase (predicted)  LOC364200  similar to glyceraldehyde-3-phosphate dehydrogenase  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC364200  similar to glyceraldehyde-3-phosphate dehydrogenase      Symbol and Name status set to provisional 70820 PROVISIONAL