Limk2 (LIM domain kinase 2) - Rat Genome Database

Name: Limk2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Limk2 (LIM domain kinase 2) Rattus norvegicus

Analyze

Symbol:

Limk2

Name:

LIM domain kinase 2

RGD ID:

62056

Description:

Enables protein serine/threonine kinase activity. Involved in protein phosphorylation. Located in nucleus. Orthologous to human LIMK2 (LIM domain kinase 2); PARTICIPATES IN Rho/Rac/Cdc42 mediated signaling pathway; Fc gamma receptor mediated signaling pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LIM motif-containing protein kinase 2; LIMK-2; Limk2b; Link2

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LIMK2 (LIM domain kinase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Limk2 (LIM motif-containing protein kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Limk2 (LIM domain kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LIMK2 (LIM domain kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LIMK2 (LIM domain kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Limk2 (LIM domain kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LIMK2 (LIM domain kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LIMK2 (LIM domain kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Limk2 (LIM domain kinase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Limk2 (LIM motif-containing protein kinase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	LIMK2 (LIM domain kinase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	limk2 (LIM domain kinase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	LIMK1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	78,208,182 - 78,286,106 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	78,218,063 - 78,286,007 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	82,659,036 - 82,727,030 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,899,150 - 83,967,131 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	14	80,344,888 - 80,412,888 (-)	NCBI	Rnor_WKY
Rnor_6.0	14	83,564,048 - 83,641,996 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	83,573,928 - 83,641,892 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	84,253,114 - 84,330,159 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	83,969,282 - 84,037,218 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	83,988,426 - 84,056,363 (-)	NCBI
Celera	14	77,131,523 - 77,199,230 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17alpha-ethynylestradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-diaminodiphenylmethane (EXP)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

all-trans-retinoic acid (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

caffeine (ISO)

cannabidiol (EXP)

CGP 52608 (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diuron (EXP)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fasudil (EXP)

flutamide (EXP)

formaldehyde (ISO)

genistein (ISO)

leflunomide (EXP,ISO)

lidocaine (EXP)

maneb (ISO)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-nitrosodimethylamine (EXP)

paracetamol (EXP,ISO)

paraquat (ISO)

perfluorooctanoic acid (EXP)

phenobarbital (EXP)

pregnenolone 16alpha-carbonitrile (EXP)

sevoflurane (EXP)

streptozocin (EXP)

sunitinib (ISO)

tauroursodeoxycholic acid (EXP)

testosterone (ISO)

testosterone enanthate (ISO)

thioacetamide (EXP)

topotecan (ISO)

triptonide (ISO)

undecane (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin cytoskeleton organization (IBA)

astral microtubule organization (ISO,ISS)

cornea development in camera-type eye (ISO)

establishment of vesicle localization (ISO,ISS)

head development (ISO)

negative regulation of cilium assembly (ISO,ISS)

positive regulation of protein localization to nucleus (ISO,ISS)

positive regulation of protein phosphorylation (ISO,ISS)

protein phosphorylation (IDA,IEA,ISO)

spermatid development (TAS)

spermatogenesis (ISO)

Cellular Component

centrosome (ISO,ISS)

cis-Golgi network (ISO)

cytoplasm (IBA,ISO)

cytosol (TAS)

intracellular organelle (IEA)

mitotic spindle (ISO,ISS)

nucleus (IBA)

nucleus (IDA)

nucleus (ISO)

perinuclear region of cytoplasm (IEA)

Molecular Function

ATP binding (IEA)

metal ion binding (IEA)

protein binding (ISO)

protein kinase activity (IEA,ISO)

protein serine kinase activity (IEA)

protein serine/threonine kinase activity (IBA,IDA,ISO,TAS)

Molecular Pathway Annotations Click to see Annotation Detail View

Fc gamma receptor mediated signaling pathway (IEA)

Rho/Rac/Cdc42 mediated signaling pathway (ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	LIM-kinase 2 induces formation of stress fibres, focal adhesions and membrane blebs, dependent on its activation by Rho-associated kinase-catalysed phosphorylation at threonine-505.	Amano T, etal., Biochem J 2001 Feb 15;354(Pt 1):149-59.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
5.	Comparison of tissue distribution of two novel serine/threonine kinase genes containing the LIM motif (LIMK-1 and LIMK-2) in the developing rat.	Mori T, etal., Brain Res Mol Brain Res 1997 May;45(2):247-54.
6.	LIMK-1 and LIMK-2, two members of a LIM motif-containing protein kinase family.	Nunoue K, etal., Oncogene 1995 Aug 17;11(4):701-10.
7.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
8.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
10.	Identification and characterization of TESK2, a novel member of the LIMK/TESK family of protein kinases, predominantly expressed in testis.	Rosok O, etal., Genomics 1999 Oct 1;61(1):44-54.
11.	Cloning and biochemical characterization of LIMK-2, a protein kinase containing two LIM domains.	Smolich B, etal., J Biochem (Tokyo) 1997 Feb;121(2):382-8.
12.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
13.	Cofilin phosphorylation and actin cytoskeletal dynamics regulated by rho- and Cdc42-activated LIM-kinase 2.	Sumi T, etal., J Cell Biol 1999 Dec 27;147(7):1519-32.

Additional References at PubMed

PMID:11784110	PMID:16399995	PMID:22328514	PMID:22405825	PMID:24561342	PMID:24962708	PMID:26234751	PMID:26438559	PMID:30870492

Genomics

Comparative Map Data

Limk2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	78,208,182 - 78,286,106 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	78,218,063 - 78,286,007 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	82,659,036 - 82,727,030 (-)	NCBI	Rnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,899,150 - 83,967,131 (-)	NCBI	Rnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0	14	80,344,888 - 80,412,888 (-)	NCBI	Rnor_WKY
Rnor_6.0	14	83,564,048 - 83,641,996 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	83,573,928 - 83,641,892 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	84,253,114 - 84,330,159 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	83,969,282 - 84,037,218 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	83,988,426 - 84,056,363 (-)	NCBI
Celera	14	77,131,523 - 77,199,230 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

LIMK2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	31,212,298 - 31,280,080 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p13 Ensembl	22	31,212,239 - 31,280,080 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	31,608,284 - 31,676,066 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	29,938,250 - 30,006,066 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	29,968,941 - 30,000,618	NCBI
Celera	22	15,408,353 - 15,476,551 (+)	NCBI		Celera
Cytogenetic Map	22	q12.2	NCBI
HuRef	22	14,569,980 - 14,637,678 (+)	NCBI		HuRef
CHM1_1	22	31,568,095 - 31,635,881 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	22	31,675,859 - 31,744,063 (+)	NCBI		T2T-CHM13v2.0

Limk2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	3,293,297 - 3,359,249 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	3,294,256 - 3,359,189 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	3,343,297 - 3,409,276 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	3,344,256 - 3,409,189 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	3,243,300 - 3,309,238 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	3,243,300 - 3,309,238 (-)	NCBI		MGSCv36	mm8
Celera	11	3,834,265 - 3,899,342 (-)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI

Limk2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	5,405,940 - 5,473,418 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	5,406,085 - 5,473,418 (+)	NCBI	ChiLan1.0	ChiLan1.0

LIMK2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	22	30,071,574 - 30,139,821 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	30,071,574 - 30,139,821 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	22	12,235,611 - 12,304,013 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

LIMK2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	24,182,595 - 24,242,429 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	24,146,005 - 24,240,653 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	24,052,624 - 24,112,447 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	24,565,985 - 24,625,824 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	24,527,922 - 24,624,066 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	24,269,022 - 24,329,024 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	24,530,984 - 24,590,898 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	24,592,678 - 24,652,526 (+)	NCBI		UU_Cfam_GSD_1.0

Limk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	117,116,743 - 117,185,723 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936755	374,235 - 443,223 (+)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936755	374,279 - 443,255 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LIMK2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	47,983,975 - 48,040,821 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	47,983,984 - 48,039,631 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	51,094,927 - 51,150,601 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LIMK2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	14,101,051 - 14,168,210 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	14,101,054 - 14,166,570 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	111,949,015 - 112,016,137 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Limk2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	7,700,411 - 7,766,713 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	7,700,996 - 7,766,713 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Limk2
339 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	409
Count of miRNA genes:	172
Interacting mature miRNAs:	202
Transcripts:	ENSRNOT00000026032, ENSRNOT00000050005, ENSRNOT00000057673
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	68757796	83368335	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat

Markers in Region

RH127162

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	78,218,067 - 78,218,316 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	83,573,933 - 83,574,181	NCBI	Rnor6.0
Rnor_5.0	14	84,262,205 - 84,262,453	UniSTS	Rnor5.0
RGSC_v3.4	14	83,969,287 - 83,969,535	UniSTS	RGSC3.4
Celera	14	77,131,528 - 77,131,776	UniSTS
Cytogenetic Map	14	q21	UniSTS

AI058790

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	78,218,082 - 78,218,191 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	83,573,948 - 83,574,056	NCBI	Rnor6.0
Rnor_5.0	14	84,262,220 - 84,262,328	UniSTS	Rnor5.0
RGSC_v3.4	14	83,969,302 - 83,969,410	UniSTS	RGSC3.4
Celera	14	77,131,543 - 77,131,651	UniSTS
RH 3.4 Map	14	532.3	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	26	19	12	11	12			74	30	32	11
Low		17	38	29	8	29	8	11		5	9		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_024135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251236	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770275	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770276	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770278	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492925	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_595861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY489563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC065578	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D31874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D31875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D31876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	D31877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000026032 ⟹ ENSRNOP00000026032

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	78,218,063 - 78,286,007 (-)	Ensembl
Rnor_6.0 Ensembl	14	83,573,928 - 83,641,892 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000050005 ⟹ ENSRNOP00000044951

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	78,218,063 - 78,247,186 (-)	Ensembl
Rnor_6.0 Ensembl	14	83,573,931 - 83,603,003 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000057673 ⟹ ENSRNOP00000054482

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	78,218,063 - 78,271,530 (-)	Ensembl
Rnor_6.0 Ensembl	14	83,573,928 - 83,603,047 (-)	Ensembl

RefSeq Acc Id:

NM_024135 ⟹ NP_077049

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,218,063 - 78,286,007 (-)	NCBI
Rnor_6.0	14	83,573,928 - 83,641,892 (-)	NCBI
Rnor_5.0	14	84,253,114 - 84,330,159 (-)	NCBI
RGSC_v3.4	14	83,969,282 - 84,037,218 (-)	RGD
Celera	14	77,131,523 - 77,199,230 (-)	RGD

Sequence:

show sequence

CGGGCGCGGACCTGAGGTGCTGCTGCCGGGTGGTCCTTCCTGTGTTGTCCGCGCCCTGGACCAT
GGCGGCGCTGGCGGGTGAAGAGGCCTGGAGGTGTCGGGGCTGTGGCAACTATGTTCCCCTGAGC
CAGAGGCTGTACAGGACAGCCAACGAGGCCTGGCATAGCTCCTGCTTCCGGTGTTCCGAGTGCC
AGGAGTCCCTCACCAACTGGTACTATGAGAAGGACGGGAAGCTCTACTGCCACAAGGACTACTG
GGCCAAGTTTGGAGAATTCTGCCACGGGTGCTCCCTGCTGATGACAGGGCCAGCCATGGTGGCT
GGGGAGTTTAAGTACCACCCAGAGTGCTTTGCCTGCATGAGTTGCAAGGTGATCATCGAGGATG
GGGATGCGTACGCCCTGGTGCAGCATGCTACACTCTACTGCGGGAAGTGCCACAATGAGGTGGT
GCTGGCACCCATGTTTGAAAGACTGTCTACGGAGTCTGTCCAGGACCAGCTGCCCTACTCTGTC
ACGCTCATCTCCATGCCTGCCACCACCGAGTGCAGACGTGGCTTCTCTGTGTCTGTGGAAAGCG
CCTCCTCTAACTATGCCACCACCGTGCAAGTGAAAGAGGTCAACCGGATGCACATCAGCCCCAA
CAACCGAAATGCCATCCACCCCGGGGACCGCATCTTGGAGATCAATGGGACCCCTGTCCGCACT
CTCCGAGTAGAAGAGGTGGAGGATGCGATTAACCAGACGAGCCAGACACTTCAACTGCTGATTG
AACATGACCCTGTCCCCCAGCGCCTGGACCAGTTACGGCTAGACACCCGGCTTTCTCCCCACAT
GCAGAGTAGTGGACATACTCTCATGCTCAGCACCTTGGACGCCAAGGAAAATCAGGAGGGAACA
CTGAGGAGACGTTCTCTGAGGCGCAGTAACAGCATCTCCAAGTCTCCTGGCCCCAGCTCCCCCA
AGGAGCCGCTGCTCCTGAGCCGAGACATCAGTCGCTCAGAGTCCCTTCGCTGCTCCAGCAGCTA
CTCACAGCAGATCTTCCGGCCCTGTGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTC
GGACAGGCCATCAAGGTGACTCACAAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTC
GCTGTGATGAGGAAACCCAGAAGACTTTCCTGACTGAGGTGAAAGTGATGCGAAGCCTGGACCA
CCCTAACGTGCTTAAGTTCATCGGGGTCCTGTACAAGGACAAGAAGCTGAATCTGCTGACAGAG
TACATTGAGGGGGGCACCCTGAAGGACTTTCTGCGCAATGTGGACCCGTTTCCCTGGCAACAGA
AGGTCAGGTTTGCCAAAGGCATCGCTTCCGGAATGGCTTATTTACACTCCATGTGCATCATCCA
CCGAGATCTGAACTCGCACAACTGTCTCATCAAATTGGACAAGACGGTGGTGGTAGCAGACTTC
GGGCTGTCACGTCTCATAGTGGAAGAGAGGAAAAGGCCTCCAGTAGAGAAGGCCGCCACCAAGA
AACGCACCTTACGCAAGAGTGATCGCAAGAAGCGCTACACTGTGGTGGGAAACCCCTACTGGAT
GGCCCCTGAGATGCTGAATGGCAAGAGCTACGATGAGACTGTGGATGTCTTCTCTTTTGGGATT
GTTCTCTGTGAGATCATTGGGCAGGTATATGCTGATCCCGACTGCCTTCCCCGCACACTGGACT
TCGGCCTCAACGTAAAGCTTTTCTGGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTT
CCCCCTGGCTGCTATCTGCTGCAAACTGGAGCCTGAGAGCAGACCGGCATTCTCAAAGCTGGAG
GACTCATTCGAGGCGCTCTCCCTGTTCTTGGGAGAGTTGGCCATCCCACTGCCAGCAGAGCTGG
AAGAGCTGGACCACACTGTGAGCATGGAGTATGGCCTAACCCGGGACTCGCCACCCTAGCCCTG
GTCCATCCCCCTGCAGGGGGACATTCCACAGCCAGCATTGCCCCCTCTGCGCCCTGTCCTCGCT
GTGAGCGAGCAAGCGGGACTGCCTAGGCTTCCTGTGGATTGACGGCTTGCTTAGAAGCAGAACA
AGCCATCCCTACCTCCCCAGGAGGCACTTGGGTGCAGGGAAGCAATTCTCCACAGGTTTGGGCC
TAGTTTCTGTCTGTAAATCCAACACTCACCTGAAAGCTGTGAAGAGGATAAAAGCCTGGATTCT
AGACCAAGAGTCTGTTACTGGGGACCGCCCGGGACCTCTGGACTGAGATGCCGGGAGCCTGTAG
CTTTACACTAACCTACACGGCCTGGGCCCGCCGGGCCGGATGAGTGGACTGGCCTGAGGGCCTC
TGGTTCAGCAAGGTGCAGGACTTGAAGCGATAGTATGAGTTTCAGAAACGGGGCCGTCAAAACG
TGTGAAATGACAGAGCGGTTTCTCCTTCCATCCTAGCCATGCCCTTTGGAGCAGGTTTTGAAGA
GTCTTAGTAGTGGTAAAACCTACAGGATCCAAAAAAAAAGGACTGGTTTCTGCTCAGCAGCCCA
GGGACCACATCAGTGTGTGGGGAATTTCCACTTCAGCACCCTGTCTCAACAAGCAGTCTCAAAA
ACACCAAAGAAGGTGGGGCTGGAAAGAAAGCGGCCCTGCCGTCTAAAAGCCCCACACCCAGGCT
GGTGGGCTCAGTCAGAAACTTAAGGTGTTGCCTAACAATAGATGGGTTCTGGATGCCAGTGTGG
TTTGCCTCAGACTTTGGGCCTAAGCAGGGAGAAGGGGGTCCCATTAATTTCTTTGCACCCTTGT
GGCAGCTACTGCATACCCTCTAGGATGTCTGGTCCAGGCAGCAACTTGGGACAGGCATTGGTGG
CTGCTGAGTCCCAAACTGAGATATGAAGAGAGCTCCCTGAGCTGGACCTTGTAGAGTCTACCTC
TGTTGTGCTGGTCCAGCTTACTTCCTGAGACACACTCGAGGGCCGTGGGCATGGGAAACTCTAG
GGGCACTTTCCACCCCTGGCTACCAGGTGTCCAGGGACTCCGTAGCTCACCAAGGTTCGCCATC
TCCTAAGTGGGAGCTCACATCATATTTAACACATTGGGAATGGGTTTGGTTATAAATACGTGTG
AGGGTTTGTGCTGGTGGGGGGATCCGGGGAGAGTGGCTGCTCTTATTAGCTTTTATCTGTGGGG
TGATATGTGAAATATTTTGTACATAGACAAGATGAATTATGGGATGGGAAGTCTTTGGCCACTT
TACTTGCTGTGTAGACTGTACTTGTGTGTGGAGTTTGCAAACGTGCCGCAGAGGGAATCCTGAA
CTCCCGACATCAGTGTGGTTCAGCGTCCTGCGGCGAATTATGCACGCGCTGTCCCCAGCGAGTG
TGGGAGTGGTGGGCCTGCACTGGGCCATGAGGCAGACTAAATAAATTAAGCAGTTAACAGAGC

hide sequence

RefSeq Acc Id:

XM_006251236 ⟹ XP_006251298

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,218,061 - 78,247,219 (-)	NCBI
Rnor_6.0	14	83,573,926 - 83,604,140 (-)	NCBI
Rnor_5.0	14	84,253,114 - 84,330,159 (-)	NCBI

Sequence:

show sequence

GGGCACACCTTTAATCCCAGCACTTGCAGGAGCAGAGACAGTTGGATCTGCTGAGTTCTAAGAG
AGCCAGAGAAATTTTGTCTCCAAAAAAAGAGACAGACAGGATCTTGTTATACAGCCCTCACTGA
CCTCCAATTCCCAGAGACTTGCCTGCCACGCTCTCCCATCTACTGGGATTAAAAGTGTTAGCCA
TCATACCTGGCTGTCTGCTGCTTATTTAGCCCAGCCCCACCTGCTAGACCCTCCCACATCTGTC
AAGACAGTTCCTCACAGACAGTGCCACAGAACAGTCTGATGGAGGTGATTCTTCAGTTGAGGTC
TCCCTTACTCAGGAGGCTCTAAATTGTGTCAAGCTGGCAATAAACTCCAGCTAAGACGTACACA
GAGGAAGAAAGAGCACTGCCTTCTGGGATGAGTGGATGACTTATGGGAACCAGTGAAAGGACAC
AATGGTGCTGGCTGTCCCAGCCTTGCCACTGCTTGGCTTTTGGTCATCAGTGAGGCACCTAATC
TCTTGACACTTTACTTTCCTAGAATATGAAGTGGGCATAATTCCACCTTAGAGGAATCAATATG
CTTATAATGCAAGTCACACAGATGCATACTCCGGGCCCTGTTTCCTCGTGTAGAGCAGCGCAGC
ACTGCCCCAGAGTGGAAGTGGATAGTCTCTTGAGGCTGTCCCCAGACCAGGCAGGGGGAGTAGA
TGAATGGGAACCCCAACAACAACAGAGACCAGTCCAGAGCTATGGATGTTTCTGGGGAGCACCC
TCCTGTTGTAGCTCTGCCGAAGCTGTCACCCTGTGCTTTTCACCTCTCGGAAGAGTTAACGCCT
TGTAGGCAGCTCTTCAGGCCGGTGACATTTGGACTTTAATGTGTTGGCCCTCCTGCGCTGCCTG
CCCTGAGCTGTGCGGTGGACGCACAGCCAGCACCAGTTATTGTCTGTGGCGCTTGCCTGCAGCC
TCGCTCCGGCCCCGGCTCCACCCCTTGCTGCGAGGTCTGTTTCCTAACAGCTGCTCCAACCACA
CACCTCGGTTCTGCCCGAGCTCCTCCTCTTCCTCCCTCCCTCATTCAGGGTGGGTGGGACTGAA
GGACGGACTAACTTGACAGCAGCATCTCATTTTAGCTAGTCACCGGCCCCTTCCCCAGAATGCC
TGTGTGTCTCTAGCCTCTGAAGAGAGGTACTTCTCCCGGAGCCCCGGTGGGCCACGGAGCTCCG
GAGAACCGGGGAGGAGACGCACCAGCCATGTGCCCCTGCGGGTATCTGCCAAGGAACCAGGGGC
CTGGAATCGTCTCTCTCCTGCTGCTTCGGAGGCAGAGGTGAGCACCGGGCGGCCGGCTCCAACC
AAAGGTGCCGGGAACCCGACTGTCATGGTGGCCGTCTGCAGCCAGCCTGAGGCACTCCCAGACG
GGTTTGCAGCTGAGCCTGTTGATCTGGTGTGGGAAGAAGATGGGGAGTTACTTGTCTGTCCCGG
CTTACTTCACCTCCAGAGACCCCTTTAGGTGTTCCGAGTGCCAGGAGTCCCTCACCAACTGGTA
CTATGAGAAGGACGGGAAGCTCTACTGCCACAAGGACTACTGGGCCAAGTTTGGAGAATTCTGC
CACGGGTGCTCCCTGCTGATGACAGGGCCAGCCATGGTGGCTGGGGAGTTTAAGTACCACCCAG
AGTGCTTTGCCTGCATGAGTTGCAAGGTGATCATCGAGGATGGGGATGCGTACGCCCTGGTGCA
GCATGCTACACTCTACTGCGGGAAGTGCCACAATGAGGTGGTGCTGGCACCCATGTTTGAAAGA
CTGTCTACGGAGTCTGTCCAGGACCAGCTGCCCTACTCTGTCACGCTCATCTCCATGCCTGCCA
CCACCGAGTGCAGACGTGGCTTCTCTGTGTCTGTGGAAAGCGCCTCCTCTAACTATGCCACCAC
CGTGCAAGTGAAAGAGGTCAACCGGATGCACATCAGCCCCAACAACCGAAATGCCATCCACCCC
GGGGACCGCATCTTGGAGATCAATGGGACCCCTGTCCGCACTCTCCGAGTAGAAGAGGTGGAGG
ATGCGATTAACCAGACGAGCCAGACACTTCAACTGCTGATTGAACATGACCCTGTCCCCCAGCG
CCTGGACCAGTTACGGCTAGACACCCGGCTTTCTCCCCACATGCAGAGTAGTGGACATACTCTC
ATGCTCAGCACCTTGGACGCCAAGGAAAATCAGGAGGGAACACTGAGGAGACGTTCTCTGAGGC
GCAGTAACAGCATCTCCAAGTCTCCTGGCCCCAGCTCCCCCAAGGAGCCGCTGCTCCTGAGCCG
AGACATCAGTCGCTCAGAGTCCCTTCGCTGCTCCAGCAGCTACTCACAGCAGATCTTCCGGCCC
TGTGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTCGGACAGGCCATCAAGGTGACTC
ACAAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTCGCTGTGATGAGGAAACCCAGAA
GACTTTCCTGACTGAGGTGAAAGTGATGCGAAGCCTGGACCACCCTAACGTGCTTAAGTTCATC
GGGGTCCTGTACAAGGACAAGAAGCTGAATCTGCTGACAGAGTACATTGAGGGGGGCACCCTGA
AGGACTTTCTGCGCAATGTGGACCCGTTTCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCAT
CGCTTCCGGAATGGCTTATTTACACTCCATGTGCATCATCCACCGAGATCTGAACTCGCACAAC
TGTCTCATCAAATTGGACAAGACGGTGGTGGTAGCAGACTTCGGGCTGTCACGTCTCATAGTGG
AAGAGAGGAAAAGGCCTCCAGTAGAGAAGGCCGCCACCAAGAAACGCACCTTACGCAAGAGTGA
TCGCAAGAAGCGCTACACTGTGGTGGGAAACCCCTACTGGATGGCCCCTGAGATGCTGAATGGC
AAGAGCTACGATGAGACTGTGGATGTCTTCTCTTTTGGGATTGTTCTCTGTGAGATCATTGGGC
AGGTATATGCTGATCCCGACTGCCTTCCCCGCACACTGGACTTCGGCCTCAACGTAAAGCTTTT
CTGGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTGCTATCTGCTGC
AAACTGGAGCCTGAGAGCAGACCGGCATTCTCAAAGCTGGAGGACTCATTCGAGGCGCTCTCCC
TGTTCTTGGGAGAGTTGGCCATCCCACTGCCAGCAGAGCTGGAAGAGCTGGACCACACTGTGAG
CATGGAGTATGGCCTAACCCGGGACTCGCCACCCTAGCCCTGGTCCATCCCCCTGCAGGGGGAC
ATTCCACAGCCAGCATTGCCCCCTCTGCGCCCTGTCCTCGCTGTGAGCGAGCAAGCGGGACTGC
CTAGGCTTCCTGTGGATTGACGGCTTGCTTAGAAGCAGAACAAGCCATCCCTACCTCCCCAGGA
GGCACTTGGGTGCAGGGAAGCAATTCTCCACAGGTTTGGGCCTAGTTTCTGTCTGTAAATCCAA
CACTCACCTGAAAGCTGTGAAGAGGATAAAAGCCTGGATTCTAGACCAAGAGTCTGTTACTGGG
GACCGCCCGGGACCTCTGGACTGAGATGCCGGGAGCCTGTAGCTTTACACTAACCTACACGGCC
TGGGCCCGCCGGGCCGGATGAGTGGACTGGCCTGAGGGCCTCTGGTTCAGCAAGGTGCAGGACT
TGAAGCGATAGTATGAGTTTCAGAAACGGGGCCGTCAAAACGTGTGAAATGACAGAGCGGTTTC
TCCTTCCATCCTAGCCATGCCCTTTGGAGCAGGTTTTGAAGAGTCTTAGTAGTGGTAAAACCTA
CAGGATCCAAAAAAAAAGGACTGGTTTCTGCTCAGCAGCCCAGGGACCACATCAGTGTGTGGGG
AATTTCCACTTCAGCACCCTGTCTCAACAAGCAGTCTCAAAAACACCAAAGAAGGTGGGGCTGG
AAAGAAAGCGGCCCTGCCGCCTAAAAGCCCCACACCCAGGCTGGTGGGCTCAGTCAGAAACTTA
AGGTGTTGCCTAACAATAGATGGGTTCTGGATGCCAGTGTGGTTTGCCTCAGACTTTGGGCCTA
AGCAGGGAGAAGGGGGTCCCATTAATTTCTTTGCACCCTTGTGGCAGCTACTGCATATCCTCTA
GGATGTCTGGTCCAGGCAGCAACTTGGGACAGGCATTGGTGGCTGCTGAGTCCCAAACTGAGAT
ATGAAGAGAGCTCCCTGAGCTGGACCTTGTAGAGTCTACCTCTGTTGTGCTGGTCCAGCTTACT
TCCTGAGCCACACTCGAGGGCCGTGGGCATGGGAAACTCTAGGGGCACTTTCCACCCCTGGCTA
CCAGGTGTCCAGGGACTCCGTAGCTCACCAAGGTTCGCCATCTCCTAAGTGGGAGCTCACATCA
TATTTAACACATTGGGAATGGGTTTGGTTATAAATACGTGTGAGGGTTTGTGCTGGTGGGGGGA
TCCGGGGAGAGTGGCTGCTCTTATTAGCTTTTATCTGTGGGGTGATATGTGAAATATTTTGTAC
ATAGACAAGATGAATTATGGGATGGGAAGTCTTTGGCCACTTTACTTGCTGTGTAGACTGTACT
TGTGTGTGGAGTTTGCAAACGTGCCGCAGAGGGAATCCTGAACTCCCGACATCAGTGTGGTTCA
GCGTCCTGCGGCGAATTATGCACGCGCTGTCCCCAGCGAGTGTGGGAGTGGTGGGCCTGCACTG
GGCCATGAGGCAGACTAAATAAATTAAGCAGTTAACAGAGCAA

hide sequence

RefSeq Acc Id:

XM_008770275 ⟹ XP_008768497

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,211,720 - 78,286,105 (-)	NCBI
Rnor_6.0	14	83,567,569 - 83,641,996 (-)	NCBI

Sequence:

show sequence

GGGTGGGTCCCGGTGCCAGGTGCGGTTTGGTCCTCCCCGGGCGCCGTAGGCGGTGCATCCTTCC
CGCTGCAGAGGCAGAGACGACCTCCTCTCTAAACCGCAAGCGGGCGCGGACCTGAGGTGCTGCT
GCCGGGTGGTCCTTCCTGTGTTGTCCGCGCCCTGGACCATGGCGGCGCTGGCGGGTGAAGAGGC
CTGGAGGTGTCGGGGCTGTGGCAACTATGTTCCCCTGAGCCAGAGGCTGTACAGGACAGCCAAC
GAGGCCTGGCATAGCTCCTGCTTCCGGTGTTCCGAGTGCCAGGAGTCCCTCACCAACTGGTACT
ATGAGAAGGACGGGAAGCTCTACTGCCACAAGGACTACTGGGCCAAGTTTGGAGAATTCTGCCA
CGGGTGCTCCCTGCTGATGACAGGGCCAGCCATGGTGGCTGGGGAGTTTAAGTACCACCCAGAG
TGCTTTGCCTGCATGAGTTGCAAGGTGATCATCGAGGATGGGGATGCGTACGCCCTGGTGCAGC
ATGCTACACTCTACTGCGGGAAGTGCCACAATGAGGTGGTGCTGGCACCCATGTTTGAAAGACT
GTCTACGGAGTCTGTCCAGGACCAGCTGCCCTACTCTGTCACGCTCATCTCCATGCCTGCCACC
ACCGAGTGCAGACGTGGCTTCTCTGTGTCTGTGGAAAGCGCCTCCTCTAACTATGCCACCACCG
TGCAAGTGAAAGAGGTCAACCGGATGCACATCAGCCCCAACAACCGAAATGCCATCCACCCCGG
GGACCGCATCTTGGAGATCAATGGGACCCCTGTCCGCACTCTCCGAGTAGAAGAGGTGGAGGAT
GCGATTAACCAGACGAGCCAGACACTTCAACTGCTGATTGAACATGACCCTGTCCCCCAGCGCC
TGGACCAGTTACGGCTAGACACCCGGCTTTCTCCCCACATGCAGAGTAGTGGACATACTCTCAT
GCTCAGCACCTTGGACGCCAAGGAAAATCAGGAGGGAACACTGAGGAGACGTTCTCTGAGGCGC
AGTAACAGCATCTCCAAGTCTCCTGGCCCCAGCTCCCCCAAGGAGCCGCTGCTCCTGAGCCGAG
ACATCAGTCGCTCAGAGTCCCTTCGCTGCTCCAGCAGCTACTCACAGCAGATCTTCCGGCCCTG
TGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTCGGACAGGCCATCAAGGTGACTCAC
AAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTCGCTGTGATGAGGAAACCCAGAAGA
CTTTCCTGACTGAGGTGAAAGTGATGCGAAGCCTGGACCACCCTAACGTGCTTAAGTTCATCGG
GGTCCTGTACAAGGACAAGAAGCTGAATCTGCTGACAGAGTACATTGAGGGGGGCACCCTGAAG
GACTTTCTGCGCAATGTGGACCCGTTTCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCATCG
CTTCCGGAATGGCTTATTTACACTCCATGTGCATCATCCACCGAGATCTGAACTCGCACAACTG
TCTCATCAAATTGGACAAGACGGTGGTGGTAGCAGACTTCGGGCTGTCACGTCTCATAGTGGAA
GAGAGGAAAAGGCCTCCAGTAGAGAAGGCCGCCACCAAGAAACGCACCTTACGCAAGAGTGATC
GCAAGAAGCGCTACACTGTGGTGGGAAACCCCTACTGGATGGCCCCTGAGATGCTGAATGGCAA
GAGCTACGATGAGACTGTGGATGTCTTCTCTTTTGGGATTGTTCTCTGTGAGATCATTGGGCAG
GTATATGCTGATCCCGACTGCCTTCCCCGCACACTGGACTTCGGCCTCAACGTAAAGCTTTTCT
GGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTGCTATCTGCTGCAA
ACTGGAGCCTGAGAGCAGCTCTTCTTTCCAGGAGGAAGCCTTGGGAAACCCACCCTTCCCAACC
CTGGGAAGCTCCATCAGCCAAACCCTGGGGCACTACAGAGTTCAAGACTTGCAGGAATTACTGA
TTGCTCTGGGTCTACATGCAAGCTGGGCTCGCCAGAGAGAAGAGAGGTGAAGAACCAGAGCTGC
TGCTACCTGCCTCTATGGAAACAGAGGCCTCTGCGGCTGATTCCAAACCAGAAGCCACGCAGTG
CAACTCTGCTGCTGCTCTGGGCAAGTTTTCCAAGGCGGTTACTGTACAGGCGCACAAGCGAATC
CCCAAGTGTACGTACACTGATTCTACCCTCACAGGACGCCCACGTGCTCTCTATCACCTCAGAC
CAGAGAAGGCTGCGGGGGGGGGG

hide sequence

RefSeq Acc Id:

XM_008770276 ⟹ XP_008768498

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,211,720 - 78,247,227 (-)	NCBI
Rnor_6.0	14	83,567,569 - 83,604,142 (-)	NCBI

Sequence:

show sequence

TGGGGCACACCTTTAATCCCAGCACTTGCAGGAGCAGAGACAGTTGGATCTGCTGAGTTCTAAG
AGAGCCAGAGAAATTTTGTCTCCAAAAAAAGAGACAGACAGGATCTTGTTATACAGCCCTCACT
GACCTCCAATTCCCAGAGACTTGCCTGCCACGCTCTCCCATCTACTGGGATTAAAAGTGTTAGC
CATCATACCTGGCTGTCTGCTGCTTATTTAGCCCAGCCCCACCTGCTAGACCCTCCCACATCTG
TCAAGACAGTTCCTCACAGACAGTGCCACAGAACAGTCTGATGGAGGTGATTCTTCAGTTGAGG
TCTCCCTTACTCAGGAGGCTCTAAATTGTGTCAAGCTGGCAATAAACTCCAGCTAAGACGTACA
CAGAGGAAGAAAGAGCACTGCCTTCTGGGATGAGTGGATGACTTATGGGAACCAGTGAAAGGAC
ACAATGGTGCTGGCTGTCCCAGCCTTGCCACTGCTTGGCTTTTGGTCATCAGTGAGGCACCTAA
TCTCTTGACACTTTACTTTCCTAGAATATGAAGTGGGCATAATTCCACCTTAGAGGAATCAATA
TGCTTATAATGCAAGTCACACAGATGCATACTCCGGGCCCTGTTTCCTCGTGTAGAGCAGCGCA
GCACTGCCCCAGAGTGGAAGTGGATAGTCTCTTGAGGCTGTCCCCAGACCAGGCAGGGGGAGTA
GATGAATGGGAACCCCAACAACAACAGAGACCAGTCCAGAGCTATGGATGTTTCTGGGGAGCAC
CCTCCTGTTGTAGCTCTGCCGAAGCTGTCACCCTGTGCTTTTCACCTCTCGGAAGAGTTAACGC
CTTGTAGGCAGCTCTTCAGGCCGGTGACATTTGGACTTTAATGTGTTGGCCCTCCTGCGCTGCC
TGCCCTGAGCTGTGCGGTGGACGCACAGCCAGCACCAGTTATTGTCTGTGGCGCTTGCCTGCAG
CCTCGCTCCGGCCCCGGCTCCACCCCTTGCTGCGAGGTCTGTTTCCTAACAGCTGCTCCAACCA
CACACCTCGGTTCTGCCCGAGCTCCTCCTCTTCCTCCCTCCCTCATTCAGGGTGGGTGGGACTG
AAGGACGGACTAACTTGACAGCAGCATCTCATTTTAGCTAGTCACCGGCCCCTTCCCCAGAATG
CCTGTGTGTCTCTAGCCTCTGAAGAGAGGTACTTCTCCCGGAGCCCCGGTGGGCCACGGAGCTC
CGGAGAACCGGGGAGGAGACGCACCAGCCATGTGCCCCTGCGGGTATCTGCCAAGGAACCAGGG
GCCTGGAATCGTCTCTCTCCTGCTGCTTCGGAGGCAGAGGTGTTCCGAGTGCCAGGAGTCCCTC
ACCAACTGGTACTATGAGAAGGACGGGAAGCTCTACTGCCACAAGGACTACTGGGCCAAGTTTG
GAGAATTCTGCCACGGGTGCTCCCTGCTGATGACAGGGCCAGCCATGGTGGCTGGGGAGTTTAA
GTACCACCCAGAGTGCTTTGCCTGCATGAGTTGCAAGGTGATCATCGAGGATGGGGATGCGTAC
GCCCTGGTGCAGCATGCTACACTCTACTGCGGGAAGTGCCACAATGAGGTGGTGCTGGCACCCA
TGTTTGAAAGACTGTCTACGGAGTCTGTCCAGGACCAGCTGCCCTACTCTGTCACGCTCATCTC
CATGCCTGCCACCACCGAGTGCAGACGTGGCTTCTCTGTGTCTGTGGAAAGCGCCTCCTCTAAC
TATGCCACCACCGTGCAAGTGAAAGAGGTCAACCGGATGCACATCAGCCCCAACAACCGAAATG
CCATCCACCCCGGGGACCGCATCTTGGAGATCAATGGGACCCCTGTCCGCACTCTCCGAGTAGA
AGAGGTGGAGGATGCGATTAACCAGACGAGCCAGACACTTCAACTGCTGATTGAACATGACCCT
GTCCCCCAGCGCCTGGACCAGTTACGGCTAGACACCCGGCTTTCTCCCCACATGCAGAGTAGTG
GACATACTCTCATGCTCAGCACCTTGGACGCCAAGGAAAATCAGGAGGGAACACTGAGGAGACG
TTCTCTGAGGCGCAGTAACAGCATCTCCAAGTCTCCTGGCCCCAGCTCCCCCAAGGAGCCGCTG
CTCCTGAGCCGAGACATCAGTCGCTCAGAGTCCCTTCGCTGCTCCAGCAGCTACTCACAGCAGA
TCTTCCGGCCCTGTGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTCGGACAGGCCAT
CAAGGTGACTCACAAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTCGCTGTGATGAG
GAAACCCAGAAGACTTTCCTGACTGAGGTGAAAGTGATGCGAAGCCTGGACCACCCTAACGTGC
TTAAGTTCATCGGGGTCCTGTACAAGGACAAGAAGCTGAATCTGCTGACAGAGTACATTGAGGG
GGGCACCCTGAAGGACTTTCTGCGCAATGTGGACCCGTTTCCCTGGCAACAGAAGGTCAGGTTT
GCCAAAGGCATCGCTTCCGGAATGGCTTATTTACACTCCATGTGCATCATCCACCGAGATCTGA
ACTCGCACAACTGTCTCATCAAATTGGACAAGACGGTGGTGGTAGCAGACTTCGGGCTGTCACG
TCTCATAGTGGAAGAGAGGAAAAGGCCTCCAGTAGAGAAGGCCGCCACCAAGAAACGCACCTTA
CGCAAGAGTGATCGCAAGAAGCGCTACACTGTGGTGGGAAACCCCTACTGGATGGCCCCTGAGA
TGCTGAATGGCAAGAGCTACGATGAGACTGTGGATGTCTTCTCTTTTGGGATTGTTCTCTGTGA
GATCATTGGGCAGGTATATGCTGATCCCGACTGCCTTCCCCGCACACTGGACTTCGGCCTCAAC
GTAAAGCTTTTCTGGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTG
CTATCTGCTGCAAACTGGAGCCTGAGAGCAGCTCTTCTTTCCAGGAGGAAGCCTTGGGAAACCC
ACCCTTCCCAACCCTGGGAAGCTCCATCAGCCAAACCCTGGGGCACTACAGAGTTCAAGACTTG
CAGGAATTACTGATTGCTCTGGGTCTACATGCAAGCTGGGCTCGCCAGAGAGAAGAGAGGTGAA
GAACCAGAGCTGCTGCTACCTGCCTCTATGGAAACAGAGGCCTCTGCGGCTGATTCCAAACCAG
AAGCCACGCAGTGCAACTCTGCTGCTGCTCTGGGCAAGTTTTCCAAGGCGGTTACTGTACAGGC
GCACAAGCGAATCCCCAAGTGTACGTACACTGATTCTACCCTCACAGGACGCCCACGTGCTCTC
TATCACCTCAGACCAGAGAAGGCTGCGGGGGGGGGG

hide sequence

RefSeq Acc Id:

XM_008770277 ⟹ XP_008768499

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,211,721 - 78,247,224 (-)	NCBI
Rnor_6.0	14	83,567,569 - 83,604,141 (-)	NCBI

Sequence:

show sequence

GGGGCACACCTTTAATCCCAGCACTTGCAGGAGCAGAGACAGTTGGATCTGCTGAGTTCTAAGA
GAGCCAGAGAAATTTTGTCTCCAAAAAAAGAGACAGACAGGATCTTGTTATACAGCCCTCACTG
ACCTCCAATTCCCAGAGACTTGCCTGCCACGCTCTCCCATCTACTGGGATTAAAAGTGTTAGCC
ATCATACCTGGCTGTCTGCTGCTTATTTAGCCCAGCCCCACCTGCTAGACCCTCCCACATCTGT
CAAGACAGTTCCTCACAGACAGTGCCACAGAACAGTCTGATGGAGGTGATTCTTCAGTTGAGGT
CTCCCTTACTCAGGAGGCTCTAAATTGTGTCAAGCTGGCAATAAACTCCAGCTAAGACGTACAC
AGAGGAAGAAAGAGCACTGCCTTCTGGGATGAGTGGATGACTTATGGGAACCAGTGAAAGGACA
CAATGGTGCTGGCTGTCCCAGCCTTGCCACTGCTTGGCTTTTGGTCATCAGTGAGGCACCTAAT
CTCTTGACACTTTACTTTCCTAGAATATGAAGTGGGCATAATTCCACCTTAGAGGAATCAATAT
GCTTATAATGCAAGTCACACAGATGCATACTCCGGGCCCTGTTTCCTCGTGTAGAGCAGCGCAG
CACTGCCCCAGAGTGGAAGTGGATAGTCTCTTGAGGCTGTCCCCAGACCAGGCAGGGGGAGTAG
ATGAATGGGAACCCCAACAACAACAGAGACCAGTCCAGAGCTATGGATGTTTCTGGGGAGCACC
CTCCTGTTGTAGCTCTGCCGAAGCTGTCACCCTGTGCTTTTCACCTCTCGGAAGAGTTAACGCC
TTGTAGGCAGCTCTTCAGGCCGGTGACATTTGGACTTTAATGTGTTGGCCCTCCTGCGCTGCCT
GCCCTGAGCTGTGCGGTGGACGCACAGCCAGCACCAGTTATTGTCTGTGGCGCTTGCCTGCAGC
CTCGCTCCGGCCCCGGCTCCACCCCTTGCTGCGAGGTCTGTTTCCTAACAGCTGCTCCAACCAC
ACACCTCGGTTCTGCCCGAGCTCCTCCTCTTCCTCCCTCCCTCATTCAGGGTGGGTGGGACTGA
AGGACGGACTAACTTGACAGCAGCATCTCATTTTAGCTAGTCACCGGCCCCTTCCCCAGAATGC
CTGTGTGTCTCTAGCCTCTGAAGAGAGGTACTTCTCCCGGAGCCCCGGTGGGCCACGGAGCTCC
GGAGAACCGGGGAGGAGACGCACCAGCCATGTGCCCCTGCGGGTATCTGCCAAGGAACCAGGGG
CCTGGAATCGTCTCTCTCCTGCTGCTTCGGAGGCAGAGGTGAGCACCGGGCGGCCGGCTCCAAC
CAAAGGTGCCGGGAACCCGACTGTCATGGTGGCCGTCTGCAGCCAGCCTGAGGCACTCCCAGAC
GGGTTTGCAGCTGAGCCTGTTGATCTGGTGTGGGAAGAAGATGGGGAGTTACTTGTCTGTCCCG
GCTTACTTCACCTCCAGAGACCCCTTTAGGTGTTCCGAGTGCCAGGAGTCCCTCACCAACTGGT
ACTATGAGAAGGACGGGAAGCTCTACTGCCACAAGGACTACTGGGCCAAGTTTGGAGAATTCTG
CCACGGGTGCTCCCTGCTGATGACAGGGCCAGCCATGGTGGCTGGGGAGTTTAAGTACCACCCA
GAGTGCTTTGCCTGCATGAGTTGCAAGGTGATCATCGAGGATGGGGATGCGTACGCCCTGGTGC
AGCATGCTACACTCTACTGCGGGAAGTGCCACAATGAGGTGGTGCTGGCACCCATGTTTGAAAG
ACTGTCTACGGAGTCTGTCCAGGACCAGCTGCCCTACTCTGTCACGCTCATCTCCATGCCTGCC
ACCACCGAGTGCAGACGTGGCTTCTCTGTGTCTGTGGAAAGCGCCTCCTCTAACTATGCCACCA
CCGTGCAAGTGAAAGAGGTCAACCGGATGCACATCAGCCCCAACAACCGAAATGCCATCCACCC
CGGGGACCGCATCTTGGAGATCAATGGGACCCCTGTCCGCACTCTCCGAGTAGAAGAGGTGGAG
GATGCGATTAACCAGACGAGCCAGACACTTCAACTGCTGATTGAACATGACCCTGTCCCCCAGC
GCCTGGACCAGTTACGGCTAGACACCCGGCTTTCTCCCCACATGCAGAGTAGTGGACATACTCT
CATGCTCAGCACCTTGGACGCCAAGGAAAATCAGGAGGGAACACTGAGGAGACGTTCTCTGAGG
CGCAGTAACAGCATCTCCAAGTCTCCTGGCCCCAGCTCCCCCAAGGAGCCGCTGCTCCTGAGCC
GAGACATCAGTCGCTCAGAGTCCCTTCGCTGCTCCAGCAGCTACTCACAGCAGATCTTCCGGCC
CTGTGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTCGGACAGGCCATCAAGGTGACT
CACAAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTCGCTGTGATGAGGAAACCCAGA
AGACTTTCCTGACTGAGGTGAAAGTGATGCGAAGCCTGGACCACCCTAACGTGCTTAAGTTCAT
CGGGGTCCTGTACAAGGACAAGAAGCTGAATCTGCTGACAGAGTACATTGAGGGGGGCACCCTG
AAGGACTTTCTGCGCAATGTGGACCCGTTTCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCA
TCGCTTCCGGAATGGCTTATTTACACTCCATGTGCATCATCCACCGAGATCTGAACTCGCACAA
CTGTCTCATCAAATTGGACAAGACGGTGGTGGTAGCAGACTTCGGGCTGTCACGTCTCATAGTG
GAAGAGAGGAAAAGGCCTCCAGTAGAGAAGGCCGCCACCAAGAAACGCACCTTACGCAAGAGTG
ATCGCAAGAAGCGCTACACTGTGGTGGGAAACCCCTACTGGATGGCCCCTGAGATGCTGAATGG
CAAGAGCTACGATGAGACTGTGGATGTCTTCTCTTTTGGGATTGTTCTCTGTGAGATCATTGGG
CAGGTATATGCTGATCCCGACTGCCTTCCCCGCACACTGGACTTCGGCCTCAACGTAAAGCTTT
TCTGGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTGCTATCTGCTG
CAAACTGGAGCCTGAGAGCAGCTCTTCTTTCCAGGAGGAAGCCTTGGGAAACCCACCCTTCCCA
ACCCTGGGAAGCTCCATCAGCCAAACCCTGGGGCACTACAGAGTTCAAGACTTGCAGGAATTAC
TGATTGCTCTGGGTCTACATGCAAGCTGGGCTCGCCAGAGAGAAGAGAGGTGAAGAACCAGAGC
TGCTGCTACCTGCCTCTATGGAAACAGAGGCCTCTGCGGCTGATTCCAAACCAGAAGCCACGCA
GTGCAACTCTGCTGCTGCTCTGGGCAAGTTTTCCAAGGCGGTTACTGTACAGGCGCACAAGCGA
ATCCCCAAGTGTACGTACACTGATTCTACCCTCACAGGACGCCCACGTGCTCTCTATCACCTCA
GACCAGAGAAGGCTGCGGGGGGGGGG

hide sequence

RefSeq Acc Id:

XM_008770278 ⟹ XP_008768500

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,211,720 - 78,286,104 (-)	NCBI
Rnor_6.0	14	83,567,569 - 83,641,995 (-)	NCBI

Sequence:

show sequence

GGTGGGTCCCGGTGCCAGGTGCGGTTTGGTCCTCCCCGGGCGCCGTAGGCGGTGCATCCTTCCC
GCTGCAGAGGCAGAGACGACCTCCTCTCTAAACCGCAAGCGGGCGCGGACCTGAGGTGCTGCTG
CCGGGTGGTCCTTCCTGTGTTGTCCGCGCCCTGGACCATGGCGGCGCTGGCGGGTGAAGAGGCC
TGGAGGTGTCGGGGCTGTGGCAACTATGTTCCCCTGAGCCAGAGGCTGTACAGGACAGCCAACG
AGGCCTGGCATAGCTCCTGCTTCCGGTGTTCCGAGTGCCAGGAGTCCCTCACCAACTGGTACTA
TGAGAAGGACGGGAAGCTCTACTGCCACAAGGACTACTGGGCCAAGTTTGGAGAATTCTGCCAC
GGGTGCTCCCTGCTGATGACAGGGCCAGCCATGGTGGCTGGGGAGTTTAAGTACCACCCAGAGT
GCTTTGCCTGCATGAGTTGCAAGGTGATCATCGAGGATGGGGATGCGTACGCCCTGGTGCAGCA
TGCTACACTCTACTGCGGGAAGTGCCACAATGAGGTGGTGCTGGCACCCATGTTTGAAAGACTG
TCTACGGAGTCTGTCCAGGACCAGCTGCCCTACTCTGTCACGCTCATCTCCATGCCTGCCACCA
CCGAGTGCAGACGTGGCTTCTCTGTGTCTGTGGAAAGCGCCTCCTCTAACTATGCCACCACCGT
GCAAGTGAAAGAGGTCAACCGGATGCACATCAGCCCCAACAACCGAAATGCCATCCACCCCGGG
GACCGCATCTTGGAGATCAATGGGACCCCTGTCCGCACTCTCCGAGTAGAAGAGGTGGAGGATG
CGATTAACCAGACGAGCCAGACACTTCAACTGCTGATTGAACATGACCCTGTCCCCCAGCGCCT
GGACCAGTTACGGCTAGACACCCGGCTTTCTCCCCACATGCAGAGTAGTGGACATACTCTCATG
CTCAGCACCTTGGACGCCAAGGAAAATCAGGAGGGAACACTGAGGAGACGTTCTCTGAGGCGCA
GTAACAGCATCTCCAAGTCTCCTGGCCCCAGCTCCCCCAAGGAGCCGCTGCTCCTGAGCCGAGA
CATCAGTCGCTCAGAGTCCCTTCGCTGCTCCAGCAGCTACTCACAGCAGATCTTCCGGCCCTGT
GACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTCGGACAGGCCATCAAGGTGACTCACA
AAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTCGCTGTGATGAGGAAACCCAGAAGAC
TTTCCTGACTGAGGTGAAAGTGATGCGAAGCCTGGACCACCCTAACGTGCTTAAGTTCATCGGG
GTCCTGTACAAGGACAAGAAGCTGAATCTGCTGACAGAGTACATTGAGGGGGGCACCCTGAAGG
ACTTTCTGCGCAATGTGGACCCGTTTCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCATCGC
TTCCGGAATGGCTTATTTACACTCCATGTGCATCATCCACCGAGATCTGAACTCGCACAACTGT
CTCATCAAATTGGACAAGACGGTGGTGGTAGCAGACTTCGGGCTGTCACGTCTCATAGTGGAAG
AGAGGAAAAGGCCTCCAGTAGAGAAGGCCGCCACCAAGAAACGCACCTTACGCAAGAGTGATCG
CAAGAAGCGCTACACTGTGGTGGGAAACCCCTACTGGATGGCCCCTGAGATGCTGAATGGCAAG
AGCTACGATGAGACTGTGGATGTCTTCTCTTTTGGGATTGTTCTCTGTGAGATCATTGGGCAGG
TATATGCTGATCCCGACTGCCTTCCCCGCACACTGGACTTCGGCCTCAACGTAAAGCTTTTCTG
GGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTGCTATCTGCTGCAAA
CTGGAGCCTGAGAGCAGGAGGAAGCCTTGGGAAACCCACCCTTCCCAACCCTGGGAAGCTCCAT
CAGCCAAACCCTGGGGCACTACAGAGTTCAAGACTTGCAGGAATTACTGATTGCTCTGGGTCTA
CATGCAAGCTGGGCTCGCCAGAGAGAAGAGAGGTGAAGAACCAGAGCTGCTGCTACCTGCCTCT
ATGGAAACAGAGGCCTCTGCGGCTGATTCCAAACCAGAAGCCACGCAGTGCAACTCTGCTGCTG
CTCTGGGCAAGTTTTCCAAGGCGGTTACTGTACAGGCGCACAAGCGAATCCCCAAGTGTACGTA
CACTGATTCTACCCTCACAGGACGCCCACGTGCTCTCTATCACCTCAGACCAGAGAAGGCTGCG
GGGGGGGGG

hide sequence

RefSeq Acc Id:

XM_008770279 ⟹ XP_008768501

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,221,134 - 78,286,104 (-)	NCBI
Rnor_6.0	14	83,576,999 - 83,641,995 (-)	NCBI

Sequence:

show sequence

GGTGGGTCCCGGTGCCAGGTGCGGTTTGGTCCTCCCCGGGCGCCGTAGGCGGTGCATCCTTCCC
GCTGCAGAGGCAGAGACGACCTCCTCTCTAAACCGCAAGCGGGCGCGGACCTGAGGTGCTGCTG
CCGGGTGGTCCTTCCTGTGTTGTCCGCGCCCTGGACCATGGCGGCGCTGGCGGGTGAAGAGGCC
TGGAGGTGTCGGGGCTGTGGCAACTATGTTCCCCTGAGCCAGAGGCTGTACAGGACAGCCAACG
AGGCCTGGCATAGCTCCTGCTTCCGGTGTTCCGAGTGCCAGGAGTCCCTCACCAACTGGTACTA
TGAGAAGGACGGGAAGCTCTACTGCCACAAGGACTACTGGGCCAAGTTTGGAGAATTCTGCCAC
GGGTGCTCCCTGCTGATGACAGGGCCAGCCATGGTGGCTGGGGAGTTTAAGTACCACCCAGAGT
GCTTTGCCTGCATGAGTTGCAAGGTGATCATCGAGGATGGGGATGCGTACGCCCTGGTGCAGCA
TGCTACACTCTACTGCGGGAAGTGCCACAATGAGGTGGTGCTGGCACCCATGTTTGAAAGACTG
TCTACGGAGTCTGTCCAGGACCAGCTGCCCTACTCTGTCACGCTCATCTCCATGCCTGCCACCA
CCGAGTGCAGACGTGGCTTCTCTGTGTCTGTGGAAAGCGCCTCCTCTAACTATGCCACCACCGT
GCAAGTGAAAGAGGTCAACCGGATGCACATCAGCCCCAACAACCGAAATGCCATCCACCCCGGG
GACCGCATCTTGGAGATCAATGGGACCCCTGTCCGCACTCTCCGAGTAGAAGAGGTGGAGGATG
CGATTAACCAGACGAGCCAGACACTTCAACTGCTGATTGAACATGACCCTGTCCCCCAGCGCCT
GGACCAGTTACGGCTAGACACCCGGCTTTCTCCCCACATGCAGAGTAGTGGACATACTCTCATG
CTCAGCACCTTGGACGCCAAGGAAAATCAGGAGGGAACACTGAGGAGACGTTCTCTGAGGCGCA
GTAACAGCATCTCCAAGTCTCCTGGCCCCAGCTCCCCCAAGGAGCCGCTGCTCCTGAGCCGAGA
CATCAGTCGCTCAGAGTCCCTTCGCTGCTCCAGCAGCTACTCACAGCAGATCTTCCGGCCCTGT
GACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTCGGACAGGCCATCAAGGTGACTCACA
AAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTCGCTGTGATGAGGAAACCCAGAAGAC
TTTCCTGACTGAGGTGAAAGTGATGCGAAGCCTGGACCACCCTAACGTGCTTAAGTTCATCGGG
GTCCTGTACAAGGACAAGAAGCTGAATCTGCTGACAGAGTACATTGAGGGGGGCACCCTGAAGG
ACTTTCTGCGCAATGTGGACCCGTTTCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCATCGC
TTCCGGAATGGCTTATTTACACTCCATGTGCATCATCCACCGAGATCTGAACTCGCACAACTGT
CTCATCAAATTGGACAAGACGGTGGTGGTAGCAGACTTCGGGCTGTCACGTCTCATAGTGGAAG
AGAGGAAAAGGCCTCCAGTAGAGAAGGCCGCCACCAAGAAACGCACCTTACGCAAGAGTGATCG
CAAGAAGCGCTACACTGTGGTGGGAAACCCCTACTGGATGGCCCCTGAGATGCTGAATGGCAAG
AGCTACGATGAGACTGTGGATGTCTTCTCTTTTGGGATTGTTCTCTGTGAGATCATTGGGCAGG
TATATGCTGATCCCGACTGCCTTCCCCGCACACTGGACTTCGGCCTCAACGTAAAGCTTTTCTG
GGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTGCTATCTGCTGCAAA
CTGGAGCCTGAGAGCAGGAAAATCTGGACGAAGCATGTGGACCCATTGATAGAATGTGTGAGAT
GAATGGGGCTATGGGTTCAGTCCTCAGCTCCCGGGGCGGCCAACAAAAGACAATTACAGGGACT
GGTGGTGTGTCTCAGGAATAGAGGGTGCTTGCCTGGTAAATGCCAGGTCCTGGGTTGCACCTTT
AGCAAGCACACACACAGATGCTCCACTCACCCACACACCCTCAAAGCATAACGTGATTAATTTT
ATATCGTGACCTTTATCTAAAAAAAATGCTTATAACTCTTAAAA

hide sequence

RefSeq Acc Id:

XM_039091790 ⟹ XP_038947718

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,211,719 - 78,233,774 (-)	NCBI

RefSeq Acc Id:

XR_005492924

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,219,575 - 78,286,106 (-)	NCBI

RefSeq Acc Id:

XR_005492925

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,218,061 - 78,247,226 (-)	NCBI

RefSeq Acc Id:

XR_595861

RefSeq Status:

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	78,208,182 - 78,286,105 (-)	NCBI
Rnor_6.0	14	83,564,048 - 83,641,996 (-)	NCBI

Sequence:

show sequence

GGGTGGGTCCCGGTGCCAGGTGCGGTTTGGTCCTCCCCGGGCGCCGTAGGCGGTGCATCCTTCC
CGCTGCAGAGGCAGAGACGACCTCCTCTCTAAACCGCAAGCGGGCGCGGACCTGAGGTGCTGCT
GCCGGGTGGTCCTTCCTGTGTTGTCCGCGCCCTGGACCATGGCGGCGCTGGCGGGTGAAGAGGC
CTGGAGGTGTCGGGGCTGTGGCAACTATGTTCCCCTGAGCCAGAGGCTGTACAGGACAGCCAAC
GAGGCCTGGCATAGCTCCTGCTTCCGGTGTTCCGAGTGCCAGGAGTCCCTCACCAACTGGTACT
ATGAGAAGGACGGGAAGCTCTACTGCCACAAGGACTACTGGGCCAAGTTTGGAGAATTCTGCCA
CGGGTGCTCCCTGCTGATGACAGGGCCAGCCATGGTGGCTGGGGAGTTTAAGTACCACCCAGAG
TGCTTTGCCTGCATGAGTTGCAAGGTGATCATCGAGGATGGGGATGCGTACGCCCTGGTGCAGC
ATGCTACACTCTACTGCGGGAAGTGCCACAATGAGGTGGTGCTGGCACCCATGTTTGAAAGACT
GTCTACGGAGTCTGTCCAGGACCAGCTGCCCTACTCTGTCACGCTCATCTCCATGCCTGCCACC
ACCGAGTGCAGACGTGGCTTCTCTGTGTCTGTGGAAAGCGCCTCCTCTAACTATGCCACCACCG
TGCAAGTGAAAGAGGTCAACCGGATGCACATCAGCCCCAACAACCGAAATGCCATCCACCCCGG
GGACCGCATCTTGGAGATCAATGGGACCCCTGTCCGCACTCTCCGAGTAGAAGAGGTGGAGGAT
GCGATTAACCAGACGAGCCAGACACTTCAACTGCTGATTGAACATGACCCTGTCCCCCAGCGCC
TGGACCAGTTACGGCTAGACACCCGGCTTTCTCCCCACATGCAGAGTAGTGGACATACTCTCAT
GCTCAGCACCTTGGACGCCAAGGAAAATCAGGAGGGAACACTGAGGAGACGTTCTCTGAGGCGC
AGTAACAGCATCTCCAAGTCTCCTGGCCCCAGCTCCCCCAAGGAGCCGCTGCTCCTGAGCCGAG
ACATCAGTCGCTCAGAGTCCCTTCGCTGCTCCAGCAGCTACTCACAGCAGATCTTCCGGCCCTG
TGACCTGATCCACGGGGAGGTCCTGGGGAAGGGCTTCTTCGGACAGGCCATCAAGGTGACTCAC
AAAGCCACAGGCAAAGTGATGGTCATGAAGGAGTTAATTCGCTGTGATGAGGAAACCCAGAAGA
CTTTCCTGACTGAGGTGAAAGTGATGCGAAGCCTGGACCACCCTAACGTGCTTAAGTTCATCGG
GGTCCTGTACAAGGACAAGAAGCTGAATCTGCTGACAGAGTACATTGAGGGGGGCACCCTGAAG
GACTTTCTGCGCAATGTGGACCCGTTTCCCTGGCAACAGAAGGTCAGGTTTGCCAAAGGCATCG
CTTCCGGAATGGCTTATTTACACTCCATGTGCATCATCCACCGAGATCTGAACTCGCACAACTG
TCTCATCAAATTGGACAAGACGGTGGTGGTAGCAGACTTCGGGCTGTCACGTCTCATAGTGGAA
GAGAGGAAAAGGCCTCCAGTAGAGAAGGCCGCCACCAAGAAACGCACCTTACGCAAGAGTGATC
GCAAGAAGCGCTACACTGTGGTGGGAAACCCCTACTGGATGGCCCCTGAGATGCTGAATGGCAA
GAGCTACGATGAGACTGTGGATGTCTTCTCTTTTGGGATTGTTCTCTGTGAGATCATTGGGCAG
GTATATGCTGATCCCGACTGCCTTCCCCGCACACTGGACTTCGGCCTCAACGTAAAGCTTTTCT
GGGAGAAGTTTGTCCCAACAGACTGTCCCCCAGCCTTCTTCCCCCTGGCTGCTATCTGCTGCAA
ACTGGAGCCTGAGAGCAGCTCTTCTTTCCAGGAGGAAGCCTTGGGAAACCCACCCTTCCCAACC
CTGGGAAGCTCCATCAGCCAAACCCTGGGGCACTACAGAGTTCAAGACTTGCAGGAATTACTGA
TTGCTCTGGGTCTACATGCAAGCTGGGCTCGCCAGAGAGAAGAGAGGTGAAGAACCAGAGCTGC
TGCTACCTGCCTCTATGGAAACAGAGGCCTCTGCGGCTGATTCCAAACCAGAAGCCACGCAGTG
CAACTCTGCTGCTGCTCTGGGCAAGTTTTCCAAGGCGGTTACTGTACAGGCGCACAAGCGAATC
CCCAAGTGTCTCAGCTCCTCGTTGGGAAGAGAGCTTCAAGGCCGGTGACGAACTGGGTAAAAAA
AGTCGTCTGAGGAACGCATACAGCAGGGCCTGACTTATCAAGGAAGCATGAAACCAACAATGGG
CCTGTGATTAGCATCTGATTACTGTCCCACTGCTTATGTGCGATGTTTGTGCAGGGGAAACGTC
CACATTTAGCAGGCATGATACCTGCCAAGCAGGGTGGTCTGAAATGGCATTGAGCTTACAGCCC
TTGCCCTGATGACTGTTCCCTACGGGTGGGGAGAGGGGGAGGCTCGGAGCTTGCTTCTAGCCCA
CATGCGGTTTCCTGTTGTACAGGTTGTTCTCAGAGCCTGTTTGCTAAGGAAAGGGGTGGTCCGG
AGGTTAGTGACAGGGAGTCTGGTGACTTAGTGCCTTCCCCCTGTGTGTACAGCAAAGTTCCCTC
AAGGTCACATGGCAGCCCCATGACAGCCTAAAAAAAGTAAAACTAAAAGAAAAAGGCCTGCTGG
CCTCTGCACCTGGCCCCAGCTGAGCCTGGATTAAGAGCAGTTAGTACATGCTTCTGAAGCTCTG
GAAACTGTCATAAGATTGGAAGGCAGCCAAAGGCTGTCCAGAGGCTGAGGAACATGGGAAAATC
TCAGGGCTCAGTCCAGCACGGTTTGGGTCAGTGGACTGCACAGGCAGAGAGCAGCTATACTGTT
TTCTTCAGAGTTTCTACATGAACAAGTAGGTGTCCCTGGACCTGCAAGTCATCGATGCTTCTGA
GGACCATGACCTCAGTCTGGGAGTTAGGATGCTCTCTCTCAGGTCAATCTCGGAACCTCTCTGC
TCCCTTGACTCACGGGGAATCAGAGACACCCGTAAAATCACCTGTTCATGCAAATGGTAGGGCT
GGGATGGAAAGGAGTACAACCCCAGTGCCCATTTCAGAAACAGCGCTGCTGTCGTCATCCCTAA
CTCCCCACCTGATGGATAGACCGAGGCTCAGAAGAGCTAAGTGGTCAGGTGCTCATATCCTCTG
GACAAGCACACCAGCGACTGTTCATGGATCGCTCGCTGTGGGCCACACACCAAAGCTAAGCAGC
CACCAGCCACACACCCTCCCCATACACCCTCCCCTCCCCGCAGGACCGCTCTGGACTGGTAACA
AGAAGCAACCCGCCCCACTGCGCCACACGGACGGACGGACGACAGCTTGTTCCACCATATTCTG
AACCCGTAACCACGGGCAGAGCGCCTATTCTCTTGCCTCGAGTTTCCTCATCTGAGAACTGGAA
AGAACACCAGTTTTATCCTCTAAGAGTGATCGGGACCGTAATCTCAGCCCTCGGGAGAAGGGAG
CAGGATTCAGACTTCAGACTTCAAGAAGCCAGGCTTGGTGATTTAACACTTTAATCCTAGCAAC
CAGGAAGCAGAGGCAGGCATTTCTCTGAATTCAATGCCAGACTGGTCTGTCTAGAGAGATCCGT
GACAGCCAGAGTTACAGGGTGAGTGAGACCCTGTCTCCAACAGATCAAAACAACAAAACCCCAA
CCTCGAACAACAACAACAACAACAACAACAACAGTAAGAGTTCAAGGCCATGAGAGCATGCCAC
CTCTGTAGCAAAGCCTCGCCTGCCCCTTTCCATCTGCAATGTGGCTGGCTCCAAAACCTCTAAG
AGCGCCTCCGGTTTAGAAAACAATGGCTGAGACAATTCAACACACTTCAGACATGGCTCCCACT
GCTCAACACGCTTCAGACACGGCTCCCACTGCTGGACAACCAAGCCCACTGTACCACTTCTCTT
ACAGGGAGGCTTCTCCCATCAGAGCAATACAGCTGGTTCGTGGGGCTGGAACTCATGCCGGATT
TTGTCCAAGAACACTCGGTGTTGTAACAATGGTTTGTTTTTTTTTTTCTTTTTTTTTTTTTCTT
TTTTCTCGGAGCTGGGGACTGAACCCAGGGCCTTGCAGGCAAGCACTCTACCACTGAGCTAAAT
CCCCAACCCCGTAACAATGGTTTTGATTCTTAGAGCCACACGTCACCAGTTGTGACAGACTTGT
CCCATGGGGCTGCAAGTTTGTCCTTGCTTCCCAAGCAGTCTCTTGCACTTTCATATCCGGTAAG
AAGCGGCCTTTTCCCTAATCATTTCTTTTCTTCTCCCTACCCTAGAGGACACCCCACTGATACA
ATTTAAGCCCCAGTGGGAGACTTCAAGACCAGGGGCTAGGAACCTTTCCTAACAGTGGAATGTT
TTGACACGTGGTCTCACTCTGTCTTACAGATGGTGGTAACTCACCACCTGTCTGCTCAGATTAA
AGATCATGTCTTGCTTTTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_077049	(Get FASTA)	NCBI Sequence Viewer
	XP_006251298	(Get FASTA)	NCBI Sequence Viewer
	XP_008768497	(Get FASTA)	NCBI Sequence Viewer
	XP_008768498	(Get FASTA)	NCBI Sequence Viewer
	XP_008768499	(Get FASTA)	NCBI Sequence Viewer
	XP_008768500	(Get FASTA)	NCBI Sequence Viewer
	XP_008768501	(Get FASTA)	NCBI Sequence Viewer
	XP_038947718	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH65578	(Get FASTA)	NCBI Sequence Viewer
	BAA06673	(Get FASTA)	NCBI Sequence Viewer
	BAA06674	(Get FASTA)	NCBI Sequence Viewer
	BAA06675	(Get FASTA)	NCBI Sequence Viewer
	BAA06676	(Get FASTA)	NCBI Sequence Viewer
	EDM00166	(Get FASTA)	NCBI Sequence Viewer
	EDM00167	(Get FASTA)	NCBI Sequence Viewer
	EDM00168	(Get FASTA)	NCBI Sequence Viewer
	EDM00169	(Get FASTA)	NCBI Sequence Viewer
	EDM00170	(Get FASTA)	NCBI Sequence Viewer
	EDM00171	(Get FASTA)	NCBI Sequence Viewer
	EDM00172	(Get FASTA)	NCBI Sequence Viewer
	EDM00173	(Get FASTA)	NCBI Sequence Viewer
	P53670	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_077049 ⟸ NM_024135

- UniProtKB:

P53670 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MAALAGEEAWRCRGCGNYVPLSQRLYRTANEAWHSSCFRCSECQESLTNWYYEKDGKLYCHKDY
WAKFGEFCHGCSLLMTGPAMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV
VLAPMFERLSTESVQDQLPYSVTLISMPATTECRRGFSVSVESASSNYATTVQVKEVNRMHISP
NNRNAIHPGDRILEINGTPVRTLRVEEVEDAINQTSQTLQLLIEHDPVPQRLDQLRLDTRLSPH
MQSSGHTLMLSTLDAKENQEGTLRRRSLRRSNSISKSPGPSSPKEPLLLSRDISRSESLRCSSS
YSQQIFRPCDLIHGEVLGKGFFGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEVKVMRSLD
HPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRNVDPFPWQQKVRFAKGIASGMAYLHSMCII
HRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKAATKKRTLRKSDRKKRYTVVGNPYW
MAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAF
FPLAAICCKLEPESRPAFSKLEDSFEALSLFLGELAIPLPAELEELDHTVSMEYGLTRDSPP

hide sequence

RefSeq Acc Id:	XP_006251298 ⟸ XM_006251236
- Peptide Label:	isoform X5
- UniProtKB:	P53670 (UniProtKB/Swiss-Prot), Q5D047 (UniProtKB/TrEMBL)
- Sequence:	show sequence MGSYLSVPAYFTSRDPFRCSECQESLTNWYYEKDGKLYCHKDYWAKFGEFCHGCSLLMTGPAMV AGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVLAPMFERLSTESVQDQLPYS VTLISMPATTECRRGFSVSVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVR TLRVEEVEDAINQTSQTLQLLIEHDPVPQRLDQLRLDTRLSPHMQSSGHTLMLSTLDAKENQEG TLRRRSLRRSNSISKSPGPSSPKEPLLLSRDISRSESLRCSSSYSQQIFRPCDLIHGEVLGKGF FGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLT EYIEGGTLKDFLRNVDPFPWQQKVRFAKGIASGMAYLHSMCIIHRDLNSHNCLIKLDKTVVVAD FGLSRLIVEERKRPPVEKAATKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFG IVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAFFPLAAICCKLEPESRPAFSKL EDSFEALSLFLGELAIPLPAELEELDHTVSMEYGLTRDSPP hide sequence

RefSeq Acc Id:

XP_008768497 ⟸ XM_008770275

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAALAGEEAWRCRGCGNYVPLSQRLYRTANEAWHSSCFRCSECQESLTNWYYEKDGKLYCHKDY
WAKFGEFCHGCSLLMTGPAMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV
VLAPMFERLSTESVQDQLPYSVTLISMPATTECRRGFSVSVESASSNYATTVQVKEVNRMHISP
NNRNAIHPGDRILEINGTPVRTLRVEEVEDAINQTSQTLQLLIEHDPVPQRLDQLRLDTRLSPH
MQSSGHTLMLSTLDAKENQEGTLRRRSLRRSNSISKSPGPSSPKEPLLLSRDISRSESLRCSSS
YSQQIFRPCDLIHGEVLGKGFFGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEVKVMRSLD
HPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRNVDPFPWQQKVRFAKGIASGMAYLHSMCII
HRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKAATKKRTLRKSDRKKRYTVVGNPYW
MAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAF
FPLAAICCKLEPESSSSFQEEALGNPPFPTLGSSISQTLGHYRVQDLQELLIALGLHASWARQR
EER

hide sequence

RefSeq Acc Id:

XP_008768500 ⟸ XM_008770278

- Peptide Label:

isoform X3

- Sequence:

show sequence

MAALAGEEAWRCRGCGNYVPLSQRLYRTANEAWHSSCFRCSECQESLTNWYYEKDGKLYCHKDY
WAKFGEFCHGCSLLMTGPAMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV
VLAPMFERLSTESVQDQLPYSVTLISMPATTECRRGFSVSVESASSNYATTVQVKEVNRMHISP
NNRNAIHPGDRILEINGTPVRTLRVEEVEDAINQTSQTLQLLIEHDPVPQRLDQLRLDTRLSPH
MQSSGHTLMLSTLDAKENQEGTLRRRSLRRSNSISKSPGPSSPKEPLLLSRDISRSESLRCSSS
YSQQIFRPCDLIHGEVLGKGFFGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEVKVMRSLD
HPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRNVDPFPWQQKVRFAKGIASGMAYLHSMCII
HRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKAATKKRTLRKSDRKKRYTVVGNPYW
MAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAF
FPLAAICCKLEPESRRKPWETHPSQPWEAPSAKPWGTTEFKTCRNY

hide sequence

RefSeq Acc Id:

XP_008768498 ⟸ XM_008770276

- Peptide Label:

isoform X2

- Sequence:

show sequence

MCPCGYLPRNQGPGIVSLLLLRRQRCSECQESLTNWYYEKDGKLYCHKDYWAKFGEFCHGCSLL
MTGPAMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVLAPMFERLSTESV
QDQLPYSVTLISMPATTECRRGFSVSVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILE
INGTPVRTLRVEEVEDAINQTSQTLQLLIEHDPVPQRLDQLRLDTRLSPHMQSSGHTLMLSTLD
AKENQEGTLRRRSLRRSNSISKSPGPSSPKEPLLLSRDISRSESLRCSSSYSQQIFRPCDLIHG
EVLGKGFFGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKD
KKLNLLTEYIEGGTLKDFLRNVDPFPWQQKVRFAKGIASGMAYLHSMCIIHRDLNSHNCLIKLD
KTVVVADFGLSRLIVEERKRPPVEKAATKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDET
VDVFSFGIVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAFFPLAAICCKLEPES
SSSFQEEALGNPPFPTLGSSISQTLGHYRVQDLQELLIALGLHASWARQREER

hide sequence

RefSeq Acc Id:

XP_008768499 ⟸ XM_008770277

- Peptide Label:

isoform X4

- Sequence:

show sequence

MGSYLSVPAYFTSRDPFRCSECQESLTNWYYEKDGKLYCHKDYWAKFGEFCHGCSLLMTGPAMV
AGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEVVLAPMFERLSTESVQDQLPYS
VTLISMPATTECRRGFSVSVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVR
TLRVEEVEDAINQTSQTLQLLIEHDPVPQRLDQLRLDTRLSPHMQSSGHTLMLSTLDAKENQEG
TLRRRSLRRSNSISKSPGPSSPKEPLLLSRDISRSESLRCSSSYSQQIFRPCDLIHGEVLGKGF
FGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEVKVMRSLDHPNVLKFIGVLYKDKKLNLLT
EYIEGGTLKDFLRNVDPFPWQQKVRFAKGIASGMAYLHSMCIIHRDLNSHNCLIKLDKTVVVAD
FGLSRLIVEERKRPPVEKAATKKRTLRKSDRKKRYTVVGNPYWMAPEMLNGKSYDETVDVFSFG
IVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAFFPLAAICCKLEPESSSSFQEE
ALGNPPFPTLGSSISQTLGHYRVQDLQELLIALGLHASWARQREER

hide sequence

RefSeq Acc Id:

XP_008768501 ⟸ XM_008770279

- Peptide Label:

isoform X6

- Sequence:

show sequence

MAALAGEEAWRCRGCGNYVPLSQRLYRTANEAWHSSCFRCSECQESLTNWYYEKDGKLYCHKDY
WAKFGEFCHGCSLLMTGPAMVAGEFKYHPECFACMSCKVIIEDGDAYALVQHATLYCGKCHNEV
VLAPMFERLSTESVQDQLPYSVTLISMPATTECRRGFSVSVESASSNYATTVQVKEVNRMHISP
NNRNAIHPGDRILEINGTPVRTLRVEEVEDAINQTSQTLQLLIEHDPVPQRLDQLRLDTRLSPH
MQSSGHTLMLSTLDAKENQEGTLRRRSLRRSNSISKSPGPSSPKEPLLLSRDISRSESLRCSSS
YSQQIFRPCDLIHGEVLGKGFFGQAIKVTHKATGKVMVMKELIRCDEETQKTFLTEVKVMRSLD
HPNVLKFIGVLYKDKKLNLLTEYIEGGTLKDFLRNVDPFPWQQKVRFAKGIASGMAYLHSMCII
HRDLNSHNCLIKLDKTVVVADFGLSRLIVEERKRPPVEKAATKKRTLRKSDRKKRYTVVGNPYW
MAPEMLNGKSYDETVDVFSFGIVLCEIIGQVYADPDCLPRTLDFGLNVKLFWEKFVPTDCPPAF
FPLAAICCKLEPESRKIWTKHVDPLIECVR

hide sequence

RefSeq Acc Id:

ENSRNOP00000054482 ⟸ ENSRNOT00000057673

RefSeq Acc Id:

ENSRNOP00000026032 ⟸ ENSRNOT00000026032

RefSeq Acc Id:

ENSRNOP00000044951 ⟸ ENSRNOT00000050005

RefSeq Acc Id:	XP_038947718 ⟸ XM_039091790
- Peptide Label:	isoform X7

Protein Domains

LIM zinc-binding PDZ Protein kinase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P53670-F1-model_v2	AlphaFold	P53670	1-638	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699443

Promoter ID:

EPDNEW_R9948

Type:

initiation region

Name:

Limk2_1

Description:

LIM domain kinase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9949

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	83,603,015 - 83,603,075	EPDNEW

RGD ID:

13699424

Promoter ID:

EPDNEW_R9949

Type:

initiation region

Name:

Limk2_2

Description:

LIM domain kinase 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_R9948

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	83,641,951 - 83,642,011	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:62056	AgrOrtholog
BioCyc Gene	G2FUF-15229	BioCyc
Ensembl Genes	ENSRNOG00000019000	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000026032	ENTREZGENE
	ENSRNOP00000026032.3	UniProtKB/Swiss-Prot
	ENSRNOP00000044951	ENTREZGENE
	ENSRNOP00000044951.2	UniProtKB/TrEMBL
	ENSRNOP00000054482.4	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000026032	ENTREZGENE
	ENSRNOT00000026032.7	UniProtKB/Swiss-Prot
	ENSRNOT00000050005	ENTREZGENE
	ENSRNOT00000050005.4	UniProtKB/TrEMBL
	ENSRNOT00000057673.4	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cysteine Rich Protein	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Transferase(Phosphotransferase) domain 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:5623751	IMAGE-MGC_LOAD
InterPro	Kinase-like_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prot_kinase_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Protein_kinase_ATP_BS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Ser-Thr/Tyr_kinase_cat_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Znf_LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:29524	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:72430	IMAGE-MGC_LOAD
NCBI Gene	29524	ENTREZGENE
PANTHER	LIM DOMAIN KINASE 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LIM DOMAIN KINASE 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Pkinase_Tyr	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Limk2	PhenoGen
PROSITE	LIM_DOMAIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	LIM_DOMAIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_ATP	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PROTEIN_KINASE_DOM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	LIM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PDZ	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Glucocorticoid receptor-like (DNA-binding domain)	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF50156	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF56112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8L2QN67_RAT	UniProtKB/TrEMBL
	A0A8L2QS45_RAT	UniProtKB/TrEMBL
	LIMK2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q5D047	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-30	Limk2	LIM domain kinase 2	Limk2	LIM motif-containing protein kinase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2002-06-10	Limk2	LIM motif-containing protein kinase 2			Name updated	70584	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_domains	contains two repeats of the LIM motif at the N-terminus and a protein kinase consensus sequence at the C-terminus	61653
gene_transcript	has several alternative splicing forms	61653

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

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Imported Annotations - KEGG (archival)