Slc35e4 (solute carrier family 35, member E4) - Rat Genome Database

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Gene: Slc35e4 (solute carrier family 35, member E4) Rattus norvegicus
Analyze
Symbol: Slc35e4
Name: solute carrier family 35, member E4
RGD ID: 708484
Description: Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Predicted to be active in Golgi apparatus. Orthologous to human SLC35E4 (solute carrier family 35 member E4); INTERACTS WITH 1,3,5-trinitro-1,3,5-triazinane; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC266687; MGC93128; putative phosphate-phosphoenolpyruvate translocator; solute carrier family 35 member E4
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,026,914 - 83,033,778 (-)NCBIGRCr8
mRatBN7.21478,803,320 - 78,810,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,803,323 - 78,810,241 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,244,360 - 83,251,224 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01484,484,442 - 84,491,306 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,930,049 - 80,936,871 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,163,971 - 84,170,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,163,972 - 84,170,835 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01484,847,696 - 84,854,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,569,021 - 84,575,885 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11484,588,166 - 84,595,026 (-)NCBI
Celera1477,715,330 - 77,722,194 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932  


Genomics

Comparative Map Data
Slc35e4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81483,026,914 - 83,033,778 (-)NCBIGRCr8
mRatBN7.21478,803,320 - 78,810,186 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1478,803,323 - 78,810,241 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1483,244,360 - 83,251,224 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01484,484,442 - 84,491,306 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01480,930,049 - 80,936,871 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01484,163,971 - 84,170,835 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1484,163,972 - 84,170,835 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01484,847,696 - 84,854,560 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41484,569,021 - 84,575,885 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11484,588,166 - 84,595,026 (-)NCBI
Celera1477,715,330 - 77,722,194 (-)NCBICelera
Cytogenetic Map14q21NCBI
SLC35E4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382230,635,781 - 30,669,019 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2230,635,781 - 30,669,016 (+)EnsemblGRCh38hg38GRCh38
GRCh372231,031,768 - 31,065,006 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362229,361,793 - 29,373,862 (+)NCBINCBI36Build 36hg18NCBI36
Celera2214,831,889 - 14,843,953 (+)NCBICelera
Cytogenetic Map22q12.2NCBI
HuRef2213,994,152 - 14,006,208 (+)NCBIHuRef
CHM1_12230,991,527 - 31,003,586 (+)NCBICHM1_1
T2T-CHM13v2.02231,097,725 - 31,132,558 (+)NCBIT2T-CHM13v2.0
Slc35e4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39113,857,022 - 3,864,664 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl113,857,021 - 3,864,664 (-)EnsemblGRCm39 Ensembl
GRCm38113,907,022 - 3,914,664 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl113,907,021 - 3,914,664 (-)EnsemblGRCm38mm10GRCm38
MGSCv37113,807,025 - 3,814,667 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36113,807,025 - 3,814,667 (-)NCBIMGSCv36mm8
Celera114,401,551 - 4,409,193 (-)NCBICelera
Cytogenetic Map11A1NCBI
cM Map112.75NCBI
Slc35e4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554554,853,632 - 4,863,617 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554554,853,632 - 4,863,617 (+)NCBIChiLan1.0ChiLan1.0
SLC35E4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22340,591,679 - 40,605,285 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12243,292,349 - 43,322,567 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02211,660,947 - 11,720,447 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12229,462,404 - 29,520,761 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2229,462,404 - 29,475,749 (+)Ensemblpanpan1.1panPan2
SLC35E4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12623,714,960 - 23,720,977 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2623,715,105 - 23,720,444 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2623,585,328 - 23,591,712 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02624,098,852 - 24,105,237 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12623,800,265 - 23,806,650 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02624,062,897 - 24,069,280 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02624,123,483 - 24,129,869 (+)NCBIUU_Cfam_GSD_1.0
Slc35e4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118116,641,478 - 116,648,502 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493690485,727 - 92,070 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493690485,729 - 92,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC35E4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1447,520,089 - 47,526,704 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11447,518,602 - 47,550,157 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21450,630,699 - 50,637,846 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC35E4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11913,516,718 - 13,529,361 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1913,519,018 - 13,528,501 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045112,597,200 - 112,608,473 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc35e4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247476,992,931 - 7,002,037 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247476,992,939 - 7,002,037 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc35e4
43 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:63
Count of miRNA genes:56
Interacting mature miRNAs:61
Transcripts:ENSRNOT00000005646
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat

Markers in Region
RH128598  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21478,803,372 - 78,803,555 (+)MAPPERmRatBN7.2
Rnor_6.01484,164,022 - 84,164,204NCBIRnor6.0
Rnor_5.01484,847,747 - 84,847,929UniSTSRnor5.0
RGSC_v3.41484,569,072 - 84,569,254UniSTSRGSC3.4
Celera1477,715,381 - 77,715,563UniSTS
RH 3.4 Map14545.2UniSTS
Cytogenetic Map14q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000005646   ⟹   ENSRNOP00000005646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1478,803,323 - 78,810,241 (-)Ensembl
Rnor_6.0 Ensembl1484,163,972 - 84,170,835 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000080413   ⟹   ENSRNOP00000068680
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1484,164,470 - 84,170,301 (-)Ensembl
RefSeq Acc Id: NM_153316   ⟹   NP_695228
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,026,914 - 83,033,778 (-)NCBI
mRatBN7.21478,803,322 - 78,810,186 (-)NCBI
Rnor_6.01484,163,971 - 84,170,835 (-)NCBI
Rnor_5.01484,847,696 - 84,854,560 (-)NCBI
RGSC_v3.41484,569,021 - 84,575,885 (-)RGD
Celera1477,715,330 - 77,722,194 (-)RGD
Sequence:
RefSeq Acc Id: XM_039091642   ⟹   XP_038947570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,026,914 - 83,033,244 (-)NCBI
mRatBN7.21478,804,412 - 78,809,681 (-)NCBI
RefSeq Acc Id: XM_039091643   ⟹   XP_038947571
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81483,026,914 - 83,030,023 (-)NCBI
mRatBN7.21478,803,320 - 78,806,436 (-)NCBI
Protein Sequences
Protein RefSeqs NP_695228 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947570 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947571 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAD55791 (Get FASTA)   NCBI Sequence Viewer  
  AAH85693 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000005646
  ENSRNOP00000005646.3
GenBank Protein Q5RKL7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_695228   ⟸   NM_153316
- UniProtKB: Q5RKL7 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068680   ⟸   ENSRNOT00000080413
Ensembl Acc Id: ENSRNOP00000005646   ⟸   ENSRNOT00000005646
RefSeq Acc Id: XP_038947571   ⟸   XM_039091643
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947570   ⟸   XM_039091642
- Peptide Label: isoform X1
Protein Domains
EamA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5RKL7-F1-model_v2 AlphaFold Q5RKL7 1-350 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699432
Promoter ID:EPDNEW_R9957
Type:initiation region
Name:Slc35e4_1
Description:solute carrier family 35, member E4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01484,170,880 - 84,170,940EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:708484 AgrOrtholog
BioCyc Gene G2FUF-15208 BioCyc
Ensembl Genes ENSRNOG00000004168 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000005646 ENTREZGENE
  ENSRNOT00000005646.5 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7191218 IMAGE-MGC_LOAD
InterPro Sugar_P_trans_dom UniProtKB/Swiss-Prot
  TPT_transporter UniProtKB/Swiss-Prot
KEGG Report rno:266687 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93128 IMAGE-MGC_LOAD
NCBI Gene 266687 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 35 UniProtKB/Swiss-Prot
Pfam TPT UniProtKB/Swiss-Prot
PhenoGen Slc35e4 PhenoGen
RatGTEx ENSRNOG00000004168 RatGTEx
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/Swiss-Prot
UniProt Q5RKL7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-07-08 Slc35e4  solute carrier family 35, member E4  LOC266687  putative phosphate-phosphoenolpyruvate translocator  Symbol and Name updated 1299863 APPROVED