LOC120096659 (60S ribosomal protein L36-like) - Rat Genome Database

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Gene: LOC120096659 (60S ribosomal protein L36-like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: LOC120096659
Name: 60S ribosomal protein L36-like
RGD ID: 41280378
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07015977.1; large ribosomal subunit protein eL36-like
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81487,581,947 - 87,586,444 (+)NCBIGRCr8
mRatBN7.21483,371,636 - 83,371,941 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1483,371,636 - 83,371,941 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0 Ensembl1488,874,295 - 88,874,600 (+)NCBIRnor6.0rn6Rnor6.0
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in LOC120096659
4 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063273787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000078467   ⟹   ENSRNOP00000069250
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1483,371,636 - 83,371,941 (+)Ensembl
RefSeq Acc Id: XM_063273787   ⟹   XP_063129857
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81487,581,947 - 87,586,444 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063129857 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000069250.1
RefSeq Acc Id: ENSRNOP00000069250   ⟸   ENSRNOT00000078467
RefSeq Acc Id: XP_063129857   ⟸   XM_063273787

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUV9-F1-model_v2 AlphaFold A0A0G2JUV9 1-101 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:41280378 AgrOrtholog
BioCyc Gene G2FUF-15030 BioCyc
Ensembl Genes ENSRNOG00000061615 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078467.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.1760 UniProtKB/TrEMBL
InterPro L36e_sf UniProtKB/TrEMBL
  Ribosomal_L36e UniProtKB/TrEMBL
NCBI Gene LOC120096659 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L36 UniProtKB/TrEMBL
  PTHR10114 UniProtKB/TrEMBL
Pfam Ribosomal_L36e UniProtKB/TrEMBL
PhenoGen LOC120096659 PhenoGen
PROSITE RIBOSOMAL_L36E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000061615 RatGTEx
UniProt A0A0G2JUV9_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120096659  60S ribosomal protein L36-like  AABR07015977.1    Data merged from RGD:15014211 737654 PROVISIONAL
2021-01-27 LOC120096659  60S ribosomal protein L36-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 AABR07015977.1        Symbol and Name status set to provisional 45752 PROVISIONAL