 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
Molecular Pathway Annotations |
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Analyze GeneStrainQTL List |
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Cellular Component
Molecular Function
Molecular Pathway AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology AnnotationsBiological Process
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Cellular Component
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Molecular Function
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Molecular Pathway AnnotationsReferences - curated| 1. | Holmqvist MH, etal., Proc Natl Acad Sci U S A 2002 Jan 22;99(2):1035-40. |
| 2. | Kitazawa M, etal., J Biol Chem. 2014 Jun 20;289(25):17597-609. doi: 10.1074/jbc.M114.563452. Epub 2014 May 8. |
| 3. | McCue HV, etal., Cold Spring Harb Perspect Biol. 2010 Aug;2(8):a004085. doi: 10.1101/cshperspect.a004085. Epub 2010 Jul 28. |
| 4. | MGD data from the GO Consortium |
| 5. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 6. | RGD automated import pipeline for gene-chemical interactions |
| 7. | RGD comprehensive gene curation |
| 8. | Rhodes KJ, etal., J Neurosci. 2004 Sep 8;24(36):7903-15. |
| 9. | Shibata R, etal., J Biol Chem 2003 Sep 19;278(38):36445-54. Epub 2003 Jun 26. |
References - uncuratedGenomics
Comparative Map Data| Kcnip4 (Rattus norvegicus - Norway rat) |
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| KCNIP4 (Homo sapiens - human) |
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| Kcnip4 (Mus musculus - house mouse) |
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| Kcnip4 (Chinchilla lanigera - long-tailed chinchilla) |
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| KCNIP4 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| KCNIP4 (Canis lupus familiaris - dog) |
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| Kcnip4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| KCNIP4 (Sus scrofa - pig) |
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| KCNIP4 (Chlorocebus sabaeus - African green monkey) |
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| Kcnip4 (Heterocephalus glaber - naked mole-rat) |
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Position Markers| D14Rat87 |
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| D14Rat88 |
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| D14Got108 |
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| D14Got137 |
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| D14Got104 |
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| RH131556 |
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| RH144553 |
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| BE113856 |
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| BE114195 |
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| RH137736 |
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| RH138036 |
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| RH138347 |
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| BE115263 |
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QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
Genetic ModelsmiRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 42 | 12 | 4 | ||||||||||
| Low | 2 | 20 | 7 | 4 | 2 | 4 | 6 | 6 | 32 | 23 | 28 | 10 | 6 |
| Below cutoff | 1 | 22 | 38 | 25 | 13 | 25 | 2 | 3 | 7 | 1 | 2 |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_181365 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_017599086 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017599087 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017599088 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017599089 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017599090 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07015604 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07015605 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07015606 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07015607 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07015608 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07015609 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07015610 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07015611 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07015612 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07072402 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080247 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080248 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080249 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080250 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080251 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080252 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080253 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080254 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080255 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080256 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080257 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080258 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080259 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080260 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080261 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080262 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080263 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080264 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080265 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080266 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080267 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080268 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01080269 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC094990 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AF345444 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AF345445 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AF453245 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473963 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000049743 ⟹ ENSRNOP00000042016 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | ENSRNOT00000079658 ⟹ ENSRNOP00000075583 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_181365 ⟹ NP_852030 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
CCTCCTCCACTTCCTCCTTTAGTGACTTGGCAGCAGGTGGCAGGGGAGGTGCCAAGCGTGCCAGhide sequence |
| RefSeq Acc Id: | XM_017599086 ⟹ XP_017454575 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TAATAAAAATAACCAGAAAAAAAAAGAAACAAAAAAGTCATCAGTACACTGTAATCTTGTTTAThide sequence |
| RefSeq Acc Id: | XM_017599087 ⟹ XP_017454576 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TTCTTAATGTAGTTTAATGGCTTTACAAAGAAAGCCAGGGTGAGGAGCGCTTCTCAGTGGCTGThide sequence |
| RefSeq Acc Id: | XM_017599088 ⟹ XP_017454577 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TTATTTATTTTTTCTACTTACTTATTTTATGAGTATTTTAAATAAACTTTTAGCAGCTTTGAAAhide sequence |
| RefSeq Acc Id: | XM_017599089 ⟹ XP_017454578 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GCAGCCTCCTCCACTTCCTCCTTTAGTGACTTGGCAGCAGGTGGCAGAGGAGGTGCCAAGCGTGhide sequence |
| RefSeq Acc Id: | XM_017599090 ⟹ XP_017454579 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
ATAAAAATAACCAGAAAAAAAAAGAAACAAAAAAGTCATCAGTACACTGTAATCTTGTTTATAThide sequence |
Protein Sequences| Protein RefSeqs | NP_852030 | (Get FASTA) | NCBI Sequence Viewer |
| XP_017454575 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454576 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454577 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454578 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017454579 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAK28291 | (Get FASTA) | NCBI Sequence Viewer |
| AAK28292 | (Get FASTA) | NCBI Sequence Viewer | |
| AAL86768 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL99909 | (Get FASTA) | NCBI Sequence Viewer | |
| EDL99910 | (Get FASTA) | NCBI Sequence Viewer | |
| Q99MG9 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_852030 ⟸ NM_181365 |
| - UniProtKB: | Q99MG9 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MNVRRVESISAQLEEASSTGGFLYAQNNTKRSIKERLMKLLPCSAAKTSSPAIQNSVEDELEMAhide sequence |
| RefSeq Acc Id: | XP_017454578 ⟸ XM_017599089 |
| - Peptide Label: | isoform X4 |
| - UniProtKB: | Q99MG9 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MNVRRVESISAQLEEASSTGDSVEDELEMATVRHRPEALELLEAQSKFTKKELQILYRGFKNEChide sequence |
| RefSeq Acc Id: | XP_017454577 ⟸ XM_017599088 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MSGCRKRCKREILKFAQYLLRLLTGSLHTDSVEDELEMATVRHRPEALELLEAQSKFTKKELQIhide sequence |
| RefSeq Acc Id: | XP_017454576 ⟸ XM_017599087 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MNLEGLEMIAVLIVIVLFVKLLEQFGLIEAGLEDSVEDELEMATVRHRPEALELLEAQSKFTKKhide sequence |
| RefSeq Acc Id: | XP_017454575 ⟸ XM_017599086 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MLTLEWESEGLQTVGIVVIICASLKLLHLLGLIDFSEDSVEDELEMATVRHRPEALELLEAQSKhide sequence |
| RefSeq Acc Id: | XP_017454579 ⟸ XM_017599090 |
| - Peptide Label: | isoform X5 |
| - UniProtKB: | A0A0G2KAZ2 (UniProtKB/TrEMBL) |
| - Sequence: |
MATVRHRPEALELLEAQSKFTKKELQILYRGFKNECPSGVVNEETFKEIYSQFFPQGDSTTYAHhide sequence |
| RefSeq Acc Id: | ENSRNOP00000075583 ⟸ ENSRNOT00000079658 |
| RefSeq Acc Id: | ENSRNOP00000042016 ⟸ ENSRNOT00000049743 |
Protein Domains
EF-hand
TranscriptomeStrain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:708539 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000032350 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000042016 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOP00000075583 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000049743 | ENTREZGENE, UniProtKB/TrEMBL |
| ENSRNOT00000079658 | ENTREZGENE, UniProtKB/TrEMBL | |
| InterPro | EF-hand-dom_pair | UniProtKB/Swiss-Prot |
| EF_Hand_1_Ca_BS | UniProtKB/Swiss-Prot | |
| EF_hand_dom | UniProtKB/Swiss-Prot | |
| Recoverin | UniProtKB/Swiss-Prot | |
| KEGG Report | rno:259243 | UniProtKB/Swiss-Prot |
| NCBI Gene | 259243 | ENTREZGENE |
| PANTHER | PTHR23055 | UniProtKB/Swiss-Prot |
| Pfam | EF-hand_7 | UniProtKB/Swiss-Prot |
| PhenoGen | Kcnip4 | PhenoGen |
| PROSITE | EF_HAND_1 | UniProtKB/Swiss-Prot |
| EF_HAND_2 | UniProtKB/Swiss-Prot | |
| SMART | EFh | UniProtKB/Swiss-Prot |
| Superfamily-SCOP | SSF47473 | UniProtKB/Swiss-Prot |
| Transposagen | Kcnip4 |
Transposagen |
| UniGene | Rn.205864 | ENTREZGENE |
| UniProt | A0A0G2KAZ2 | ENTREZGENE, UniProtKB/TrEMBL |
| G3V9C1_RAT | UniProtKB/TrEMBL | |
| KCIP4_RAT | UniProtKB/Swiss-Prot, ENTREZGENE | |
| UniProt Secondary | Q99MG8 | UniProtKB/Swiss-Prot |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2006-03-30 | Kcnip4 | Kv channel interacting protein 4 | potassium channel interacting protein 4 | Name updated | 1299863 | APPROVED | |
| 2004-09-10 | Kcnip4 | potassium channel interacting protein 4 | Kchip4 | Symbol and Name updated | 1299863 | APPROVED |
RGD Curation Notes| Note Type | Note | Reference |
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| More on Kcnip4 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 708539 |
| Created: | 2003-09-23 |
| Species: | Rattus norvegicus |
| Last Modified: | 2019-11-27 |
| Status: | ACTIVE |
