Scl59 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scl59 (Serum cholesterol level QTL 59) Rattus norvegicus

Symbol: Scl59
Name: Serum cholesterol level QTL 59
RGD ID: 2300197
Trait: blood cholesterol amount   (VT:0000180)    
Measurement Type: serum total cholesterol level   (CMO:0000363)    
LOD Score: Not Available
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21455,147,478 - 100,147,478RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01478,446,303 - 110,402,569RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01478,419,915 - 110,102,984RGDRnor5.0
RGSC_v3.41479,256,324 - 107,101,727RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: EHC.BN-(D14Rat43-D14Rat132)/Kyu 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Candidate Gene Status
Ppp4r3b is a candidate Gene for Scl59

Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain

References

References - curated
# Reference Title Reference Citation
1. Identification of SMEK2 as a candidate gene for regulation of responsiveness to dietary cholesterol in rats. Asahina M, etal., J Lipid Res. 2008 Aug 27.
Related QTLs

Related QTL Description Reference
Scl45 sub_region RGD:2300117


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2494Ddcdopa decarboxylase148637868586469189Rat
2058Adra2cadrenoceptor alpha 2C147547114375472846Rat
3583Rnf4ring finger protein 4147640129276423270Rat
2222Nsg1neuronal vesicle trafficking associated 1147264877172670521Rat
3978Ywhahtyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta147769633277705715Rat
71084Hs3st1heparan sulfate-glucosamine 3-sulfotransferase 1147118582671223263Rat
2303Cd38CD38 molecule146717206267212328Rat
619959Afap1actin filament associated protein 1147474332274856295Rat
2262Camk2bcalcium/calmodulin-dependent protein kinase II beta148084520680934172Rat
61858Grk4G protein-coupled receptor kinase 4147599855476080808Rat
3313Pgam2phosphoglycerate mutase 2148068179680683907Rat
619915Qdprquinoid dihydropteridine reductase146567025165683853Rat
70909HgfacHGF activator147570758875714182Rat
70941Dbnldrebrin-like148066611580681155Rat
2874Igfbp3insulin-like growth factor binding protein 3148205634782064083Rat
69310Slit2slit guidance ligand 2146261633762955934Rat
3169Nf2NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor147962739979710709Rat
2064Ap1b1adaptor related protein complex 1 subunit beta 1147987948279930778Rat
619736Rab1aRAB1A, member RAS oncogene family149442221994448799Rat
61873Ramp3receptor activity modifying protein 3148152740481544905Rat
70897Ykt6YKT6 v-SNARE homolog148083218780843394Rat
3713Slc5a1solute carrier family 5 member 1147755399077618589Rat
62056Limk2LIM domain kinase 2147820818278286106Rat
3733Sod3superoxide dismutase 3145861010458615845Rat
3237Otx1orthodenticle homeobox 1149608215196089161Rat
69367Prom1prominin 1146698954567094534Rat
3564Rgs12regulator of G-protein signaling 12147571592575824012Rat
70947Grpel1GrpE-like 1, mitochondrial147429202374298243Rat
3072Mdh1malate dehydrogenase 1149563062595645920Rat
620681Tcn2transcobalamin 2147881334378828549Rat
727937Cct4chaperonin containing TCP1 subunit 4149699185397004732Rat
2523Drd5dopamine receptor D5147248934772490774Rat
68337Htthuntingtin147584583675996094Rat
621851Wapwhey acidic protein148150312581505217Rat
620541Inpp5jinositol polyphosphate-5-phosphatase J147837416178385305Rat
620700Lrpap1LDL receptor related protein associated protein 1147565137175663380Rat
708584Spon2spondin 2147750569577518001Rat
620925Ppargc1aPPARG coactivator 1 alpha145886075259516525Rat
620929Msx1msh homeobox 1147296117072964970Rat
708484Slc35e4solute carrier family 35, member E4147880332078810186Rat
2670Gckglucokinase148078506080829842Rat
69230Ppp3r1protein phosphatase 3, regulatory subunit B, alpha149155674391606230Rat
69245Acox3acyl-CoA oxidase 3, pristanoyl147513398675176767Rat
631389Otop1otopetrin 1147250503672532497Rat
620889Slc34a2solute carrier family 34 member 2145791093157930236Rat
3159Nefhneurofilament heavy chain147983036279840347Rat
621211Fgfbp1fibroblast growth factor binding protein 1146710368667107492Rat
620789Kremen1kringle containing transmembrane protein 1148008187080147489Rat
620714Fgfr3fibroblast growth factor receptor 3147698724277002671Rat
621413Bod1l1biorientation of chromosomes in cell division 1-like 1146910848369163255Rat
3372Ppiapeptidylprolyl isomerase A148127929281282960Rat
1303073Xbp1X-box binding protein 1148039062980395713Rat
1303135Npc1l1NPC1 like intracellular cholesterol transporter 1148107144881091113Rat
1304914Adgra3adhesion G protein-coupled receptor A3146087471960976341Rat
1304928Hmx1H6 family homeobox 1147536120775364993Rat
2441Ctbp1C-terminal binding protein 1147745558077482821Rat
2289Cckarcholecystokinin A receptor145729239757300747Rat
708539Kcnip4potassium voltage-gated channel interacting protein 4146138069962531399Rat
620891Rab28RAB28, member RAS oncogene family146924584669322968Rat
1302948Tacc3transforming, acidic coiled-coil containing protein 3147705120977065343Rat
1304954Pold2DNA polymerase delta 2, accessory subunit148074897180755188Rat
1304958Tbc1d19TBC1 domain family, member 19145708430557200221Rat
735187Ankrd36ankyrin repeat domain 36148045169980568458Rat
620812Sec14l3SEC14-like lipid binding 3147894456878955608Rat
735186EvcEvC ciliary complex subunit 1147345618173498955Rat
2543Egfrepidermal growth factor receptor149117693191349722Rat
620344Bst1bone marrow stromal cell antigen 1146725370667270203Rat
620865LifLIF, interleukin 6 family cytokine147913104979140486Rat
621779Sec14l2SEC14-like lipid binding 2147897380578998480Rat
620496Cpzcarboxypeptidase Z147522369275246946Rat
1304641Stim2stromal interaction molecule 2145687842857004405Rat
1304999Fam161aFAM161 centrosomal protein A149700944997027865Rat
1306319Tmed4transmembrane p24 trafficking protein 4148112504981129665Rat
620920Ppp2r2cprotein phosphatase 2, regulatory subunit B, gamma147384654773931178Rat
620517Xpo1exportin 1149723326397275536Rat
1305153Ccdc96coiled-coil domain containing 96147427656874279072Rat
1306014Mrps24mitochondrial ribosomal protein S24148058467180588801Rat
1306016Myo1gmyosin IG148138670181401843Rat
1305110SanbrSANT and BTB domain regulator of CSR149751665297585955Rat
1305556Nelfanegative elongation factor complex member A147680892076832998Rat
1306922Aebp1AE binding protein 1148073880080748878Rat
1304991Thoc5THO complex subunit 5147975880579792718Rat
1306371UvssaUV-stimulated scaffold protein A147730918877351922Rat
1305093Mxd4Max dimerization protein 4147656210576576224Rat
1304993Drg1developmentally regulated GTP binding protein 1147810387678119976Rat
1306037Bloc1s4biogenesis of lysosomal organelles complex 1 subunit 4147404302574044325Rat
1305566Upp1uridine phosphorylase 1148380949583829299Rat
1306402Pus10pseudouridine synthase 10149762122897684059Rat
1305469Prr14lproline rich 14-like147786984877937141Rat
1305719Nat8lN-acetyltransferase 8-like147675607776762712Rat
1307171Ahsa2activator of HSP90 ATPase homolog 2149747446597485725Rat
1307955Nsd2nuclear receptor binding SET domain protein 2147683319476911304Rat
1307414Lgalslgalectin-like149499699195004499Rat
1307258Ewsr1EWS RNA-binding protein 1147996536579994108Rat
1304774Castor1cytosolic arginine sensor for mTORC1 subunit 1147908613679090549Rat
1306733Zbtb49zinc finger and BTB domain containing 49147259067572612404Rat
2041Add1adducin 1147610864376167267Rat
1307985Lap3leucine aminopeptidase 3146560837565627359Rat
1307368Psapl1prosaposin-like 1147454464674547206Rat
727882Pno1partner of NOB1 homolog149160971191618280Rat
735146Slc1a4solute carrier family 1 member 4149453080194560190Rat
1305895Abca13ATP binding cassette subfamily A member 13148387339784376138Rat
1306100Rasl10aRAS-like, family 10, member A147995509379956471Rat
1309506Isca2-ps1iron-sulfur cluster assembly 2, pseudogene 1146771907967719877Rat
1305352LyarLy1 antibody reactive147257687872590854Rat
1305875Med28mediator complex subunit 28146559478565603583Rat
1306572Anapc4anaphase promoting complex subunit 4145812599558159253Rat
2407Crmp1collapsin response mediator protein 1147350993373556192Rat
1305605Nop14NOP14 nucleolar protein147608131876102454Rat
1305610Sh3tc1SH3 domain and tetratricopeptide repeats 1147500569175050001Rat
1310417Evc2EvC ciliary complex subunit 2147336683273454539Rat
1311045Pacrglparkin coregulated like146253201962556987Rat
1309737Tbrg4transforming growth factor beta regulator 4148148197781490781Rat
1308247PolmDNA polymerase mu148070707580716677Rat
1303094Ablim2actin binding LIM protein family, member 2147486540974990334Rat
1310210Ugp2UDP-glucose pyrophosphorylase 2149545633095497483Rat
1309318Adcy1adenylate cyclase 1148191124082020594Rat
1310505Osbp2oxysterol binding protein 2147858508878746785Rat
1559814Pes1pescadillo ribosomal biogenesis factor 1147885075478867134Rat
1311199Peli1pellino E3 ubiquitin protein ligase 1149525427495309168Rat
1308380Trmt44tRNA methyltransferase 44147517533175204291Rat
1309877Maeamacrophage erythroblast attacher, E3 ubiquitin ligase147735726177390683Rat
1310826Actr2actin related protein 2149429644394333735Rat
1310828Tmem129transmembrane protein 129, E3 ubiquitin ligase147706539177070871Rat
1311535Depdc5DEP domain containing 5, GATOR1 subcomplex subunit147773229777862924Rat
1306887Fbxl5F-box and leucine-rich repeat protein 5146730510967347383Rat
1310419Nipsnap1nipsnap homolog 1147973423479758101Rat
1310481Tmem128transmembrane protein 128147253953072548623Rat
1310842Morc2MORC family CW-type zinc finger 2147852960378571375Rat
1311771Commd1copper metabolism domain containing 1149688046396984494Rat
1311641Tbc1d10aTBC1 domain family, member 10a147905182279083603Rat
1310337Papolgpoly(A) polymerase gamma149782771297861024Rat
1303195Ddx56DEAD-box helicase 56148111200881122395Rat
1312002Coblcordon-bleu WH2 repeat protein148682813787060682Rat
1310738Rnf215ring finger protein 215147900665979013091Rat
1560394RGD1560394RGD1560394147676814576769774Rat
1308373Cnrip1cannabinoid receptor interacting protein 1149146304691492736Rat
1310972Mtmr3myotubularin related protein 3147934052379460947Rat
1309634Fam193afamily with sequence similarity 193, member A147625010376382525Rat
1306173Stk32bserine/threonine kinase 32B147307794473336128Rat
1310566Tmem17transmembrane protein 17149648364896524238Rat
1309923Bcl11aBCL11 transcription factor A149802901898124181Rat
1310621Sorcs2sortilin-related VPS10 domain containing receptor 2147437108974735943Rat
1311414Zcchc4zinc finger CCHC-type containing 4145816545958207071Rat
1305789Wdr1WD repeat domain 1147225803272291768Rat
1309304Spred2sprouty-related, EVH1 domain containing 2149422631294248162Rat
1309993Tbc1d14TBC1 domain family, member 14147417265274272182Rat
1310151Zfyve28zinc finger FYVE-type containing 28147646842476554039Rat
1310216Smtnsmoothelin147839859578420908Rat
1310604Ehbp1EH domain binding protein 1149609332796380502Rat
1309256Zmiz2zinc finger, MIZ-type containing 2148125139181267936Rat
1309539Gba3glucosylceramidase beta 3146057536860662952Rat
1309101Cep68centrosomal protein 68149444797394470533Rat
1306929Dusp18dual specificity phosphatase 18147879018378811576Rat
1310077B3gnt2UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2149680847396833674Rat
1308262Myl7myosin light chain 7148078068480783259Rat
1306978C1qtnf7C1q and TNF related 7146746788867580477Rat
1307112Fignl1fidgetin-like 1148636867086381728Rat
1305323Pla2g3phospholipase A2, group III147836762578373913Rat
1308337Patz1POZ (BTB) and AT hook containing zinc finger 1147815459078173032Rat
1308269Plekpleckstrin149139701591429693Rat
1308840Man2b2mannosidase, alpha, class 2B, member 2147396907973994089Rat
1309870Spata48spermatogenesis associated 48148603057786085644Rat
1307717Tnip2TNFAIP3 interacting protein 2147622828376246609Rat
1309501WdpcpWD repeat containing planar cell polarity effector149564595595977120Rat
1310682Pex13peroxisomal biogenesis factor 13149760282997621233Rat
1308775C14h5orf52similar to human chromosome 5 open reading frame 52147878131578789956Rat
1307921Ldb2LIM domain binding 2146627704466598071Rat
1309656Tapt1transmembrane anterior posterior transformation 1146687346766919737Rat
1308072Dhx15DEAH-box helicase 15145878714758825083Rat
1310588Sh3bp2SH3-domain binding protein 2147617609776213331Rat
1310058Stx18syntaxin 18147267068372761423Rat
1307485Cpeb2cytoplasmic polyadenylation element binding protein 2146778750367839973Rat
1310391Lgi2leucine-rich repeat LGI family, member 2145841596558443450Rat
1308067Ccm2CCM2 scaffold protein148141841881464114Rat
1359678Letm1leucine zipper and EF-hand containing transmembrane protein 1147694264776982220Rat
1561824Zrsr2-ps1zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2, pseudogene 1149697462396976356Rat
1562860Sel1l3SEL1L family member 3145777551557882076Rat
1564681Urgcpupregulator of cell proliferation148059463780638972Rat
1564874Nkx1-1NK1 homeobox 1147729667677300575Rat
1563743RGD1563743similar to ORF149705431297054623Rat
1559824NacadNAC alpha domain containing148146529981473866Rat
628718Vps54VPS54 subunit of GARP complex149537882195455871Rat
1560908Eif4enif1eukaryotic translation initiation factor 4E nuclear import factor 1147805611578099846Rat
1561762Ccdc117coiled-coil domain containing 117148039923680409824Rat
1562646Ncapgnon-SMC condensin I complex, subunit G146540423565432902Rat
1566416Dok7docking protein 7147566544475699413Rat
1561359Ogdhoxoglutarate dehydrogenase148115002181217479Rat
1311203Pik3ip1phosphoinositide-3-kinase interacting protein 1147820353978216616Rat
1565037Selenomselenoprotein M147839582678398429Rat
1565560Rps11-ps1ribosomal protein S11, pseudogene 1146834104568341815Rat
1311206Gas2l1growth arrest-specific 2 like 1147995170279961830Rat
1563315Fam53afamily with sequence similarity 53, member A147708817877124395Rat
1311231RelREL proto-oncogene, NF-kB subunit149769010597721194Rat
1563985Zpbpzona pellucida binding protein148583097186030778Rat
1564049Sertad2SERTA domain containing 2149473363794838200Rat
1311920Aftphaftiphilin149487142994925625Rat
1561846Cytl1cytokine like 1147305387673058886Rat
1563337LOC498414LRRGT00197148530726085349430Rat
1562401Jakmip1janus kinase and microtubule interacting protein 1147364736673766830Rat
1561694RGD1561694similar to High mobility group protein 2 (HMG-2)146904559069046623Rat
1563863Dnaaf10dynein axonemal assembly factor 10149161864991639828Rat
1308120Htra3HtrA serine peptidase 3147506891775097315Rat
1559465Purbpurine rich element binding protein B148134237481344857Rat
1562417Clnkcytokine-dependent hematopoietic cell linker147192389472101180Rat
1561422Ascc2activating signal cointegrator 1 complex subunit 2147950344979547801Rat
1560636Sfi1SFI1 centrin binding protein147799096578048352Rat
1559774Zmat5zinc finger, matrin type 5147956864479599595Rat
628631Mrfap1Morf4 family associated protein 1147400251274004289Rat
1564174Tns3tensin 3148317364983405671Rat
1359269Cabp7calcium binding protein 7147959882279609172Rat
1311477Sf3a1splicing factor 3A subunit 1147903139479052144Rat
1309073Fbxo48F-box protein 48149138085791382314Rat
1311827Rhbdd3rhomboid domain containing 3147999411180000294Rat
1311900Mfsd10major facilitator superfamily domain containing 10147610376276107385Rat
1584653Ccdc157coiled-coil domain containing 157147901243379031458Rat
1566234Grb10growth factor receptor bound protein 10148649505486602815Rat
68954Wfs1wolframin ER transmembrane glycoprotein147381047873834993Rat
1561042Cc2d2acoiled-coil and C2 domain containing 2A146734900467435883Rat
1587626LOC688553hypothetical protein LOC688553148374847883768293Rat
1565447Hormad2HORMA domain containing 2147921501379300447Rat
2872Igfbp1insulin-like growth factor binding protein 1148204741582052482Rat
1582968Ccdc149coiled-coil domain containing 149145850958358605017Rat
1586609LOC686087similar to motile sperm domain containing 1148228693982289413Rat
1564724Pkd1l1polycystin 1 like 1, transient receptor potential channel interacting148355296483670062Rat
1562979Ikzf1IKAROS family zinc finger 1148625506586340839Rat
1584617Nkx3-2NK3 homeobox 2146918379569186182Rat
1561605Tada2btranscriptional adaptor 2B147427928674290758Rat
1565796Msantd1Myb/SANT DNA binding domain containing 1147583236875845687Rat
1565810Sec14l4SEC14-like lipid binding 4147891275078928799Rat
1564567Cfap99cilia and flagella associated protein 99147642392376468170Rat
1564777Rnf185ring finger protein 185147829251778329832Rat
1565192Smim20small integral membrane protein 20145771130457722681Rat
1359515Pi4k2bphosphatidylinositol 4-kinase type 2 beta145822179058248716Rat
1560957Etaa1l1Ewing tumor-associated antigen 1-like 1149229846192314044Rat
1560600C1dC1D nuclear receptor corepressor149166095191673177Rat
1563894Morf4l1-ps5mortality factor 4 like 1, pseudogene 5148495712984958164Rat
1565181Usp34ubiquitin specific peptidase 34149728579997476376Rat
1582940Srbd1-ps1S1 RNA binding domain 1, pseudogene 1148786397287874151Rat
1359705Mtfp1mitochondrial fission process 1147896843478972274Rat
1561286Gapdh-ps102Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 102148800930188010396Rat
1561241Lcorlligand dependent nuclear receptor corepressor-like146527133965407732Rat
1562755RGD1562755similar to 60S ribosomal protein L23a145656623856572088Rat
1564950Fam184bfamily with sequence similarity 184, member B146547548965591388Rat
1565332Ifitm3-ps1interferon induced transmembrane protein3, pseudogene 1146123326961233688Rat
1589624Vwc2von Willebrand factor C domain containing 2148568367085825068Rat
1593771Znrf3zinc and ring finger 3148015785480313456Rat
1591358LOC685655similar to CG7638-PA148399138583992860Rat
1591112Clrn2clarin 2146565655065666193Rat
1593174Nono-ps12non-POU domain containing, octamer-binding, pseudogene 12147214458972154945Rat
1591457Eif6-ps1eukaryotic translation initiation factor 6, pseudogene 1148158411781585052Rat
1587865H2az2H2A.Z variant histone 2148129329981312209Rat
1590593Ldha-ps24lactate dehydrogenase A, pseudogene 24148156049281563089Rat
1593096Rbpjrecombination signal binding protein for immunoglobulin kappa J region145733849357523330Rat
1584682Slbpstem-loop binding protein147707144177081911Rat
1564150Zfp518bzinc finger protein 518B147212108572140479Rat
1585482Meis1Meis homeobox 1149315542693294373Rat
1586199Hsp90ab1-ps5heat shock protein 90 alpha family class B member 1, pseudogene 5146544238565447595Rat
1586200Apex2l1APEX nuclease (apurinic/apyrimidinic endonuclease) 2-like 1146716653067168080Rat
1589907Rpl38-ps2ribosomal protein L38, pseudogene 2149439999594400277Rat
1585012Osmoncostatin M147910363879108500Rat
1583379Gal3st1galactose-3-O-sulfotransferase 1147886804978886402Rat
1588187Snrpg-ps1small nuclear ribonucleoprotein polypeptide G, pseudogene 1147806813678068530Rat
1584806Cluap1-ps2clusterin associated protein 1, pseudogene 2146942050369421755Rat
1585117LOC690096similar to ribosomal protein L28149655644996567568Rat
1595126Uqcr10ubiquinol-cytochrome c reductase, complex III subunit X147956615179569017Rat
1595838Dck-ps1deoxycytidine kinase, pseudogene 1149751710897518402Rat
1589491SepsecsSep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase145831148458341745Rat
1596197Vstm2aV-set and transmembrane domain containing 2A149066001290897561Rat
1597121Lgals9-ps2galectin 9, pseudogene 2146110879861109838Rat
1596170Sec61gSec61 translocon subunit gamma149089976690906143Rat
1592623Frg2FSHD region gene 2148042726080429560Rat
1591723Haus3HAUS augmin-like complex, subunit 3147658054976599542Rat
1596848LOC680039hypothetical protein LOC680039147409442174159316Rat
1591068Kdelr1-ps1KDEL endoplasmic reticulum protein retention receptor 1, pseudogene 1146584319765843811Rat
1591079Rps2-ps39ribosomal protein S2, pseudogene 39149398860293989324Rat
1593175Aldh9a1-ps1aldehyde dehydrogenase 9 family, member A1, pseudogene 1146339676463403072Rat
1591975Sun3Sad1 and UNC84 domain containing 3148371013683748982Rat
1591976Hus1HUS1 checkpoint clamp component148368870283703466Rat
1593795Emid1EMI domain containing 1148000048680043561Rat
1597336C14h2orf74similar to human chromosome 2 open reading frame 74149749357997496697Rat
1596185Hmgn1-ps6high mobility group nucleosome binding domain 1, pseudogene 6146003031060030603Rat
1597012Slc2a9solute carrier family 2 member 9147232833472461981Rat
1594761Rps3a-ps11ribosomal protein S3a, pseudogene 11146309404163094488Rat
1596729Pisdphosphatidylserine decarboxylase147794192777991021Rat
1597113Pgm1-ps1phosphoglucomutase 1, pseudogene 1148609106086093503Rat
1597114Rpl13a-ps10ribosomal protein L13A, pseudogene 10148109939181100385Rat
1597115Kansl2-ps4KAT8 regulatory NSL complex subunit 2, pseudogene 4148053832180540654Rat
1597116Psmb3-ps5proteasome 20S subunit beta 3, pseudogene 5147715196677153837Rat
1597119Eif4a1-ps2eukaryotic translation initiation factor 4A1, pseudogene 2146577343365774657Rat
1597120Eef1a1-ps20eukaryotic translation elongation factor 1 alpha 1, pseudogene 20146231418462315751Rat
1598288Rrm1-ps1ribonucleotide reductase M1, pseudogene 1147217738672180323Rat
1642416Nudcd3NudC domain containing 3148097541781059183Rat
2319725S100a11-ps2S100 calcium binding protein A11, pseudogene 214100115882100249948Rat
2319736LOC100361636vasculin-like protein 1-like149660744296610952Rat
2319286Cbll1-ps1Cbl proto-oncogene like 1, pseudogene 1146988445069885920Rat
2319287Rab5al1Rab5a, member RAS oncogene family-like 1146833236068334470Rat
2319299LOC100361879ATP synthase subunit epsilon, mitochondrial-like147786348077864135Rat
2318741Ube2v1-ps2ubiquitin conjugating enzyme E2 V1, pseudogene 2147561744175619176Rat
2319371Polr3f-ps1RNA polymerase III subunit F, pseudogene 1146923955869242354Rat
2318182Apoo-ps3apolipoprotein O, pseudogene 3148248730382487888Rat
2320358Eif4e2-ps1eukaryotic translation initiation factor 4E family member 2, pseudogene 1145807814558079340Rat
2322065LOC10036049160S ribosomal protein L13-like148135664481357364Rat
2320735Pom121l12POM121 transmembrane nucleoporin-like 12148910851289109604Rat
2322459Rbsn-ps1rabenosyn, RAB effector, pseudogene 1146054946060551655Rat
2320935LOC100361025protein arginine methyltransferase 1-like148755116587552305Rat
2323208Hnrnpk-ps1heterogeneous nuclear ribonucleoprotein K, pseudogene 1149175662891758358Rat
2322694Ddx5-ps2DEAD-box helicase 5, pseudogene 2149848147098495298Rat
2323351LOC100363290hypothetical protein LOC100363290149164310891646555Rat
2320504LOC10036125960S ribosomal protein L13-like145763235857633066Rat
2323556Rnf115-ps1ring finger protein 115, pseudogene 1148932518989326067Rat
4888549Mir3565microRNA 3565146270975962709872Rat
2323677LOC100359517ribosomal protein S27-like149435080494399082Rat
2323894Glo1-ps2glyoxalase 1, pseudogene 2148903118089037851Rat
2325375Mir218-1microRNA 218-1146270975962709868Rat
6502321LOC100909672uncharacterized LOC100909672149949540599868980Rat
6499571Pfdn4-ps1prefoldin subunit 4, pseudogene 1147846415878464609Rat
7502494LOC102553003uncharacterized LOC102553003148692803886948136Rat
7518008Ptges3-ps1prostaglandin E synthase 3, pseudogene 1147334096673345089Rat
7536866LOC102550584hornerin-like149626236896279321Rat
7516141LOC102552091uncharacterized LOC102552091149673408596777265Rat
7503920LOC102550529uncharacterized LOC102550529149606983596082999Rat
7662187LOC102552414uncharacterized LOC102552414149686400996866249Rat
7662247LOC102552528uncharacterized LOC102552528148577231185787440Rat
7647850LOC102547860uncharacterized LOC102547860147172863371756170Rat
7635591Selenok-ps3selenoprotein K, pseudogene 3147420420174204999Rat
7636041LOC102557304uncharacterized LOC102557304148340604283408938Rat
7637966LOC102550787uncharacterized LOC102550787146961946869699696Rat
7574864Rpl18-ps8ribosomal protein L18, pseudogene 8148056501680565530Rat
7638953LOC102557119uncharacterized LOC102557119149812782698132657Rat
7627395LOC102552822uncharacterized LOC102552822145834457958368002Rat
7628136LOC102547760uncharacterized LOC102547760147153081571543942Rat
7628157LOC102549056uncharacterized LOC102549056149509482895099101Rat
7642008LOC102556795uncharacterized LOC102556795147875798478770849Rat
7661830Dcaf16DDB1 and CUL4 associated factor 16146544963165450875Rat
7596857C14h4orf50similar to human chromosome 4 open reading frame 50147356120973646151Rat
7543920LOC102552214uncharacterized LOC102552214145732206057326658Rat
7582242LOC102547136uncharacterized LOC102547136149518434595189240Rat
7582281LOC102547538uncharacterized LOC102547538147141470071436779Rat
7582704LOC102550431uncharacterized LOC102550431146917935469199671Rat
7604623LOC102552343uncharacterized LOC102552343149683211796834884Rat
7565325LOC102556834uncharacterized LOC102556834147582645175831905Rat
7606883LOC102547700uncharacterized LOC102547700148140579481408847Rat
7606982LOC102551829uncharacterized LOC102551829149390812293910470Rat
7567433LOC102548772uncharacterized LOC102548772149500327895033943Rat
7553797LOC102552529uncharacterized LOC102552529149690660496908705Rat
7704064LOC102549281uncharacterized LOC102549281147897362678990088Rat
7704924LOC102547058uncharacterized LOC102547058149516702395169167Rat
7686464LOC102550275uncharacterized LOC102550275146874731768759920Rat
7688150Dkc1-ps1dyskerin pseudouridine synthase 1, pseudogene 1146222866462230195Rat
7731769LOC102553529uncharacterized LOC102553529148848792688503110Rat
7740095Rpl7-ps1ribosomal protein L7, pseudogene 1147825252078253445Rat
7696919LOC102552900uncharacterized LOC102552900146686461266865821Rat
7743232LOC102552764uncharacterized LOC102552764148661986086627072Rat
7671595LOC102553796uncharacterized LOC102553796149713353397137233Rat
7673923LOC102549967uncharacterized LOC102549967148036874480377124Rat
7675413PolnDNA polymerase nu147657998376752460Rat
7747850LOC102547925uncharacterized LOC102547925149465505494664167Rat
9097301LOC103693769uncharacterized LOC103693769147404977374055535Rat
9071266LOC103693146non-histone chromosomal protein HMG-17 pseudogene147924762779248290Rat
9108325LOC103693081uncharacterized LOC103693081146791065667971582Rat
9155016LOC103693079cytochrome c, somatic pseudogene146732340667325242Rat
9114441LOC10369315940S ribosomal protein S6 pseudogene146311098463111679Rat
9220236LOC103693221uncharacterized LOC103693221149902612699188802Rat
9232718LOC103693090uncharacterized LOC103693090147643048676447245Rat
9279922LOC10369304540S ribosomal protein SA pseudogene145846651958467175Rat
9301616LOC103693204uncharacterized LOC103693204149330204293310404Rat
9366226LOC103693132transcription initiation factor IIA subunit 2 pseudogene147877623478776984Rat
9463298LOC103693135uncharacterized LOC103693135147892594478927167Rat
9426172LOC103693157uncharacterized LOC103693157148137565781381037Rat
9391524LOC103693208uncharacterized LOC103693208149466620894674847Rat
9431497LOC103693088uncharacterized LOC103693088147290027672923277Rat
9445976LOC103693082uncharacterized LOC103693082146827440168318468Rat
9685395Tug1taurine up-regulated 1147851989478526927Rat
11368675LOC108352757uncharacterized LOC108352757145876965958787020Rat
11368922Ube2d4l-ps2ubiquitin-conjugating enzyme E2D 4 like, pseudogene 2148063897680661336Rat
11455995LOC10835286140S ribosomal protein S28 pseudogene149493747794937817Rat
11446143LOC108352810uncharacterized LOC108352810149945208299457056Rat
11463890LOC108352771uncharacterized LOC108352771147224599372257784Rat
11466963LOC108352806uncharacterized LOC108352806149341156093421104Rat
11468209LOC108352769uncharacterized LOC108352769147160525971619000Rat
11469188LOC108352790ribosome biogenesis protein NSA2 homolog pseudogene148113038781131183Rat
11457748LOC108352794uncharacterized LOC108352794148272684082779159Rat
11364710Trnar-ucu6transfer RNA arginine (anticodon UCU) 6148713816287138247Rat
11437269LOC108352797uncharacterized LOC108352797148487819784931496Rat
11459947LOC108352756uncharacterized LOC108352756145800334958013825Rat
11427999LOC108352768uncharacterized LOC108352768146910432069108435Rat
11451885LOC108352778uncharacterized LOC108352778147540019275403500Rat
11370487LOC108352815uncharacterized LOC108352815149749629297503662Rat
11440925LOC108352813heat shock cognate 71 kDa protein pseudogene149716414697166265Rat
11371864LOC108352788uncharacterized LOC108352788148076324380777436Rat
11372689LOC108352800uncharacterized LOC108352800148755321287569267Rat
11442100LOC108352764uncharacterized LOC108352764146663696566655348Rat
11400929LOC10835280940S ribosomal protein S12 pseudogene149501796395020005Rat
11401571LOC10835286360S ribosomal protein L17 pseudogene149782298397823777Rat
11401788LOC108352765uncharacterized LOC108352765146730076467304919Rat
11402135LOC108352862uncharacterized LOC108352862149901125799026007Rat
11402271LOC10835285860S ribosomal protein L35a pseudogene148385728083857747Rat
11379724LOC108352804uncharacterized LOC108352804149116119491169648Rat
11500591LOC108352814uncharacterized protein C19orf43 homolog pseudogene149729483197295603Rat
11520377LOC108352789uncharacterized LOC108352789148084778780852539Rat
11478544LOC108352784uncharacterized LOC108352784147847105578487135Rat
11478553LOC108352833serine/arginine-rich splicing factor 3 pseudogene147218261672183963Rat
11503487LOC10835278040S ribosomal protein S17 pseudogene147578019275784552Rat
11509257LOC108352807uncharacterized LOC108352807149456056994568126Rat
11509398LOC108352821ribosome biogenesis protein NSA2 homolog pseudogene149628375196284568Rat
11510814LOC10835277360S ribosomal protein L35a pseudogene147390897073909382Rat
11485372LOC108352775uncharacterized LOC108352775147394486773948002Rat
11516851LOC108352762uncharacterized LOC108352762146445666364539882Rat
11489712LOC108352834acidic proline-rich protein PRP25-like147580977775810250Rat
41321492LOC120096635uncharacterized LOC120096635147297097972975894Rat
41086352LOC120096640uncharacterized LOC120096640147529460975296325Rat
41137280LOC120096688uncharacterized LOC120096688149500443595007530Rat
41202877LOC120096773U7 small nuclear RNA148268554882685609Rat
41322972LOC120096544uncharacterized LOC120096544149889591398905183Rat
41381223Hsp90ab1-ps12heat shock protein 90 alpha family class B member 1, pseudogene 12148168000481697410Rat
41112705LOC120096818small nucleolar RNA SNORA17147411668774116816Rat
41168071LOC120096665uncharacterized LOC120096665148623305786252365Rat
41168377LOC120096740U6 spliceosomal RNA148833653488336640Rat
41249459LOC120096774U1 spliceosomal RNA147620785276207995Rat
41249970Trnap-agg79transfer RNA proline (anticodon AGG) 79149426147894261558Rat
41283680LOC120096751U6 spliceosomal RNA148113267581132780Rat
41114651LOC120096632uncharacterized LOC120096632147206246772124747Rat
41169374Trnap-agg86transfer RNA proline (anticodon AGG) 86149652034496520418Rat
41205784LOC120096651uncharacterized LOC120096651148068845480691291Rat
41359523Rps2-ps20ribosomal protein S2, pseudogene 20145593262755934118Rat
41090605LOC120096813small nucleolar RNA SNORA17147867492978675059Rat
41091094LOC120096873U6 spliceosomal RNA147198380671983907Rat
41116037LOC120096654uncharacterized LOC120096654148130338681306222Rat
41172352LOC120096681uncharacterized LOC120096681149413848594146076Rat
41280378LOC12009665960S ribosomal protein L36-like148337163683371941Rat
41387350LOC120096685uncharacterized LOC120096685149452209894529691Rat
41092457LOC120096543uncharacterized LOC120096543149878892098791322Rat
41116190LOC120096843U2 spliceosomal RNA145695727456957478Rat
41117376LOC120096838small nucleolar RNA U13147635049976350595Rat
41173477LOC120096788small nucleolar RNA SNORA24148598480185984933Rat
41361149LOC120096696uncharacterized LOC120096696149748593597490337Rat
41388313LOC120096785U1 spliceosomal RNA148661831486618460Rat
41389389LOC120096836small nucleolar RNA SNORD125147992596379926059Rat
41094328LOC120096661uncharacterized LOC120096661148367437983681609Rat
41119182LOC120096507uncharacterized LOC120096507147815964578204665Rat
41174488LOC120096627developmental pluripotency-associated protein 3-like146945677769460079Rat
41175757LOC120096619uncharacterized LOC120096619146545210065476857Rat
41210570LOC120096504uncharacterized LOC120096504146140677661426196Rat
41211100LOC120096686uncharacterized LOC120096686149451727894522081Rat
41390640Rps19-ps8ribosomal protein S19, pseudogene 8148154720481557070Rat
41119964LOC120096820small nucleolar RNA SNORA17149538853095388662Rat
41149863LOC120096775U7 small nuclear RNA148268562382685685Rat
41391877LOC120096670uncharacterized LOC120096670148752987587534272Rat
41096592LOC120096679uncharacterized LOC120096679149401636694022660Rat
41212480Cycs-ps3cytochrome c, somatic, pseudogene 3146071556760715921Rat
41212773LOC120096770U7 small nuclear RNA147979888379798945Rat
41192253LOC120096657uncharacterized LOC120096657148183277181839913Rat
41214202LOC120096650uncharacterized LOC120096650148044524080451672Rat
41214355Rpl9-ps25ribosomal protein L9, pseudogene 25147894299578943846Rat
41214676LOC120096637uncharacterized LOC120096637147325931573264855Rat
41394454LOC120096646uncharacterized LOC120096646147893168378942634Rat
41099865LOC120096644uncharacterized LOC120096644147678400976808773Rat
41124397Cct6a-ps18chaperonin containing TCP1 subunit 6A, pseudogene 18146155191261553037Rat
41215906LOC120096808small nucleolar RNA SNORA17147320870873208839Rat
41368918LOC120096648uncharacterized LOC120096648148036530780368769Rat
41369058LOC120096656uncharacterized LOC120096656148156997981575100Rat
41369426LOC120096673uncharacterized LOC120096673149145269291489124Rat
41396070Trnap-agg61transfer RNA proline (anticodon AGG) 61147582503975825113Rat
41126470LOC120096636uncharacterized LOC120096636147298685772997356Rat
41126556LOC120096850U2 spliceosomal RNA146032993260330000Rat
41182224LOC120096841U2 spliceosomal RNA147925758779257761Rat
41193915LOC120096699uncharacterized LOC120096699149880277498877148Rat
41216753LOC120096629uncharacterized LOC120096629147141654271450253Rat
41217372Cfl1-ps6cofilin 1, pseudogene 6145674964356750117Rat
41218358LOC120096693uncharacterized LOC120096693149684364996844937Rat
41218591LOC120096643uncharacterized LOC120096643147657959276580225Rat
41347538LOC120096660uncharacterized LOC120096660148329955083312397Rat
41070336LOC120096790small nucleolar RNA SNORA9148140798881408120Rat
41103205LOC120096641uncharacterized LOC120096641147535436075357481Rat
41127835LOC120096784small nucleolar RNA SNORA5148148671881486846Rat
41184450LOC120096621uncharacterized LOC120096621146666889166760974Rat
41348836LOC120096676uncharacterized LOC120096676149189758991906807Rat
41161433LOC120096682uncharacterized LOC120096682149416201194167260Rat
41196480LOC120096761U6 spliceosomal RNA149430763594307740Rat
41271824LOC120096814small nucleolar RNA SNORA17148042132880421443Rat
41106175LOC120096771U7 small nuclear RNA146479395964794021Rat
41163873LOC120096668uncharacterized LOC120096668148696374286985133Rat
41231038LOC120096684uncharacterized LOC120096684149433374194338506Rat
41273649LOC120096617uncharacterized LOC120096617146427546364291626Rat
41375811LOC120096628uncharacterized LOC120096628147075478670773614Rat
41402058LOC120096847U2 spliceosomal RNA146973809469738232Rat
41403222LOC120096622uncharacterized LOC120096622146681288766834088Rat
41082880LOC120096639uncharacterized LOC120096639147417208674176212Rat
41164776Gapdh-ps48Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 48148389039283895380Rat
41320425LOC120096797small nucleolar RNA SNORA48147764235877642497Rat
41376686LOC120096631uncharacterized LOC120096631147189142671918318Rat
41377061LOC120096647uncharacterized LOC120096647147994542579946151Rat
41108877Rpl18-ps12ribosomal protein L18, pseudogene 12147695910076962041Rat
41134293LOC120096634uncharacterized LOC120096634147265764872660071Rat
41233465LOC120096615uncharacterized LOC120096615145793043557947798Rat
40971467LOC120096766U7 small nuclear RNA147818679478186857Rat
40996974LOC120096658uncharacterized LOC120096658148195653581961881Rat
40946069LOC120096522basic proline-rich protein-like148660180186603338Rat
40946290LOC120096624uncharacterized LOC120096624146715451767160718Rat
40946562LOC120096690uncharacterized LOC120096690149544433495451511Rat
41012300LOC120096861U4 spliceosomal RNA147379667773796760Rat
40974067Trnav-aac26transfer RNA valine (anticodon AAC) 26148113387081133942Rat
40975613LOC120096542uncharacterized LOC120096542149718414097187386Rat
40952397LOC120096748U6 spliceosomal RNA147703748577037588Rat
40977515LOC120096678uncharacterized LOC120096678149311603393147067Rat
41014016LOC120096689uncharacterized LOC120096689149505924895114522Rat
40926375LOC120096680uncharacterized LOC120096680149412774594137748Rat
40953910LOC120096692uncharacterized LOC120096692149665758396661293Rat
41014043LOC120096821small nucleolar RNA SNORA17148731226387312390Rat
41015810LOC120096633uncharacterized LOC120096633147264573272647007Rat
40926627LOC120096780small nucleolar RNA SNORA70145863795558638086Rat
40927343LOC120096694uncharacterized LOC120096694149701213497016455Rat
40927364LOC120096669uncharacterized LOC120096669148745718287529758Rat
40999201LOC120096738U6 spliceosomal RNA145629855156298654Rat
40930226LOC120096697uncharacterized LOC120096697149774283497760040Rat
40957555LOC120096614uncharacterized LOC120096614145724686657262591Rat
40931371LOC120096538uncharacterized LOC120096538147282168672824398Rat
40958885Gapdh-ps46Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 46148908863989089742Rat
40982593LOC120096805small nucleolar RNA SNORA17147128817071288300Rat
41003175LOC120096860U4 spliceosomal RNA148118697281187083Rat
40960445Glo1-ps1glyoxalase 1, pseudogene 1147353484973535402Rat
40984137LOC120096862U4 spliceosomal RNA149199894591999070Rat
40985238LOC120096769U7 small nuclear RNA147980828579808347Rat
41004689Polr3f-ps2RNA polymerase III subunit F, pseudogene 2146532810865349296Rat
40961538LOC120096666uncharacterized LOC120096666148636582486368551Rat
40938133Rpl36-ps6ribosomal protein L36, pseudogene145887752058916595Rat
40963551LOC120096620uncharacterized LOC120096620146596830565999415Rat
40987787LOC120096687uncharacterized LOC120096687149480781194814718Rat
41008161LOC120096623uncharacterized LOC120096623146695618866980445Rat
41008473LOC120096858U4 spliceosomal RNA147920869279208868Rat
41008896Rpl9-ps27ribosomal protein L9, pseudogene 27148571020685718895Rat
40938982LOC120096505uncharacterized LOC120096505147616736176176360Rat
41010079Actr1a-ps1actin related protein 1A, pseudogene 1149427561694280123Rat
40939875LOC120096856U4 spliceosomal RNA148156919181569303Rat
40992180LOC120096698uncharacterized LOC120096698149869433498696303Rat
40992670LOC120096804small nucleolar RNA SNORA17149916780199167935Rat
40943776LOC120096765U7 small nuclear RNA146697698366977044Rat
41049027LOC120096798small nucleolar RNA SNORA48147072567770725820Rat
41244728LOC120096652uncharacterized LOC120096652148071719180725962Rat
41026202LOC120096742U6 spliceosomal RNA147110536771105473Rat
41049310Gapdh-ps78Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 78149874558798746526Rat
41078953LOC120096539uncharacterized LOC120096539148453086384531858Rat
41246592LOC120096793small nucleolar RNA SNORA18147705648377056611Rat
41027054LOC120096625uncharacterized LOC120096625146907552769081053Rat
41028118LOC120096667uncharacterized LOC120096667148642547786445651Rat
41050910LOC120096653uncharacterized LOC120096653148079579280811073Rat
41031023Gapdh-ps77Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 77149941883499420202Rat
41031040LOC120096839U1 spliceosomal RNA149772841297728573Rat
41248356Snora5csmall nucleolar RNA, H/ACA box 5C148148721881487354Rat
41256134LOC120096664uncharacterized LOC120096664148603994486053196Rat
41338044LOC120096616uncharacterized LOC120096616146041493160427292Rat
41054942LOC120096840small nucleolar RNA ACA64148732777187327909Rat
41152588LOC120096764U7 small nuclear RNA146491902164919082Rat
41257153Cops8-ps3COP9 signalosome subunit 8, pseudogene 2145576474855765405Rat
41336455LOC120096758U6 spliceosomal RNA147210890772109011Rat
41057454Rps24-ps13ribosomal protein S24, pseudogene 13149727568397279747Rat
41222219Hnrnpc-ps1heterogeneous nuclear ribonucleoprotein C, pseudogene 1148307259183073569Rat
41033420LOC120096691uncharacterized LOC120096691149663494496684373Rat
41224647LOC120096767U7 small nuclear RNA147981769179817753Rat
41035330LOC120096506uncharacterized LOC120096506147772204177727496Rat
41062510Rps24-ps7ribosomal protein S24, pseudogene 7148052908380531185Rat
41062800LOC120096671uncharacterized LOC120096671149000679690019183Rat
41036241LOC120096792small Cajal body-specific RNA 16148128506181285200Rat
41037518LOC120096630uncharacterized LOC120096630147147693571491085Rat
41227426Cops8-ps4COP9 signalosome subunit 8, pseudogene 3149055809790564564Rat
41228514LOC120096626uncharacterized LOC120096626146923832969246883Rat
41039274LOC120096762U6 spliceosomal RNA147781364677813748Rat
41065002LOC120096825small nucleolar RNA SNORA17149714125197141358Rat
41237133LOC120096675uncharacterized LOC120096675149167652491678907Rat
41018088LOC120096677uncharacterized LOC120096677149235369992358109Rat
41041262LOC120096789small nucleolar RNA SNORA44148934494589345050Rat
41067315LOC120096768U7 small nuclear RNA147982574679825808Rat
41306091LOC120093047small nucleolar RNA SNORA19149597559095975713Rat
41068558C1h11orf98-ps3similar to human chromosome 11 open reading frame 98, pseudogene 3148143572081436342Rat
41308091Trnat-agu19transfer RNA threonine (anticodon AGU) 19147955217979552251Rat
41021963Gapdh-ps47Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 47148952183889522809Rat
41022020LOC120096523collagen alpha-1(III) chain-like149608825596090655Rat
41045844LOC120096674uncharacterized LOC120096674149163507091638131Rat
41309848LOC120096642uncharacterized LOC120096642147676986876776620Rat
41311414Carhsp1-ps1calcium regulated heat stable protein 1, pseudogene 1149074204590752015Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10102D14Mco2285147546949375469784Ratregion
10102D14Mco2285147546949375470354Ratregion
10102D14Mco2285147546975275469784Ratregion
10488D14Mgh8116147248920772489324Ratregion
10773D14Mit10260148205747182057735Ratregion
11086D14Mgh1119148068483380684938Ratregion
33965D14Mit15193148361068083610873Ratregion
34345D14Mgh2138147351328073513414Ratregion
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5070213RH94537165148205256082052725Ratregion
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5070422Otx11030149608587096086900Ratregion
5070494UniSTS:166211175147248942572489600Ratregion
5070502D11Ertd676e198149530797695308174Ratregion
5070522RH127087207146568364065683847Ratregion
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5502947Xpo10149727453397275334Ratregion
5502947Xpo10149727453397275366Ratregion
5502947Xpo10149727522897275334Ratregion
5503021Gal3st10147888407978885246Ratregion
5503650UniSTS:465469545145734278857343333Ratregion
5503798UniSTS:471184554149624335496243908Ratregion
5503688MEIS1_7825747149315527193156018Ratregion
5503803UniSTS:471314379148205871282060338Ratregion
5503890SRCR23H933148889815688899089Ratregion
5504117Bcl11a380149811507198115451Ratregion
5504276D2S1567E89149563151695632217Ratregion
5504548PMC303337P2224149697531896975542Ratregion
5504664PMC343796P1133149329148893291621Ratregion
5504805Hrmt1l2212148755203187552243Ratregion
5504967Igfbp1259148204781682049376Ratregion
5505118Cckar990145730056157301551Ratregion
5505446Zmiz2257148126162081261877Ratregion
5505845UniSTS:495936154149681047396810627Ratregion
5505484REN75940251147769746177697712Ratregion
5505877UniSTS:49598570147248998772490057Ratregion
5506027Ptdss2134147798818977988530Ratregion
5506332MARC_49176-49177:1118326844:1485145949569759496182Ratregion
5506384UniSTS:4791091529147996573979967268Ratregion
5506384UniSTS:4791091529147996573979967268Ratregion
5506340UniSTS:478869148147452168674521834Ratregion
5506342UniSTS:478870143147450308074503223Ratregion
5506346UniSTS:478895134147347645373476587Ratregion
5506457RH17231109147995660679956715Ratregion
5506290AFM324xh5861148682304686823907Ratregion
5506819G46230234148349301283493246Ratregion
5506813G45955130147847604678476176Ratregion
5507267fb79b101407148291618282917589Ratregion
5507113UniSTS:224593179147690166976901848Ratregion
5507193UniSTS:225179341149673564796735988Ratregion
5507321G48108118147412771674127831Ratregion
5500288D21S19520147413119174132380Ratregion
5500398GDB:437189430149751749097517920Ratregion
5500067UniSTS:236520158148637010586370263Ratregion
5499693Stim1347145687846256878809Ratregion
5499875UniSTS:23516384147735749877357582Ratregion
5499877UniSTS:235167121147504985475049975Ratregion
5499879UniSTS:235168268147428973974290007Ratregion
5499881UniSTS:235180233145687874956878982Ratregion
5500061UniSTS:236495193147852504178525234Ratregion
5502994D5Jcs82143147618816276188305Ratregion
5500605RH136188207146833323968333446Ratregion
5500382GDB:373416118147964580479645922Ratregion
5500491RH126561213147640130976401522Ratregion
5500593RH136105201149695310296953303Ratregion
5500649RH136456190146833323968333429Ratregion
5500685STS-Z408571551148128435381285904Ratregion
5503544PPARGC1A__5755891145951564359516534Ratregion
5501053PMC129753P2132145729339257293524Ratregion
5501281D12S13291550147566075075661576Ratregion
5501289G06555325147996540579965730Ratregion
5501289G06555325147996540579965730Ratregion
5502098MARC_4333-4334:996679561:1663148139530481395967Ratregion
5502100MARC_4335-4336:996679558:1280148121586481216450Ratregion
5505277BG0743891424148203414482035568Ratregion
5505558AL020980170149749911197499281Ratregion
5506624SFRS3_1875612147218383672184468Ratregion
5501888MARC_16871-16872:1015445619:10147570866475709293Ratregion
5502517RH125184160147350997473510134Ratregion
5502309RH124401150147715501977155169Ratregion
5502709DHX15175145882454258824717Ratregion
5502711FBXL5105146733136367332330Ratregion
5502770PELI1165149530890795309072Ratregion
5502770PELI1165149530890795309072Ratregion
5502369RH124640138147267460772674745Ratregion
5502477RH125040122148202820982028331Ratregion
5502581RH125436150147806828378068433Ratregion
Position Markers

Flank 1: (D14Rat43)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01478,446,303 - 78,446,524NCBI
Rnor_5.01478,419,915 - 78,420,136UniSTS
RGSC_v3.41479,256,324 - 79,256,540RGD
RGSC_v3.41479,256,325 - 79,256,540UniSTS
RGSC_v3.11479,258,715 - 79,258,931RGD
Celera1472,640,828 - 72,641,041UniSTS
SHRSP x BN Map1440.7299RGD
SHRSP x BN Map1440.7299UniSTS
FHH x ACI Map1456.8699RGD
Cytogenetic Map14q21UniSTS
Flank 2: (D14Rat132)
Rat AssemblyChrPosition (strand)Source
mRatBN7.214100,147,356 - 100,147,478 (+)MAPPER
Rnor_6.014110,402,448 - 110,402,569NCBI
Rnor_5.014110,102,863 - 110,102,984UniSTS
RGSC_v3.414107,101,605 - 107,101,727RGD
RGSC_v3.414107,101,606 - 107,101,727UniSTS
RGSC_v3.114107,120,816 - 107,120,938RGD
Celera1499,084,151 - 99,084,273UniSTS
SHRSP x BN Map1471.2399UniSTS
SHRSP x BN Map1471.2399RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)149255388695876975Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_gene RT-PCR revealed 33 candidate genes, 27 were confirmed by mRNA expression in the liver 2300117
qtl_general inducing agent: 1% cholesterol containing diet 2300117
qtl_general software used: two-sided Student's t-test or one-way ANOVA 2300117
qtl_general measurement method: rats were fed a diet containing 1% cholesterol, 10% olive oil for 2 weeks, then blood samples collected 2300117