Urgcp (upregulator of cell proliferation) - Rat Genome Database

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Gene: Urgcp (upregulator of cell proliferation) Rattus norvegicus
Analyze
Symbol: Urgcp
Name: upregulator of cell proliferation
RGD ID: 1564681
Description: Predicted to enable GTP binding activity. Predicted to be located in cytosol. Orthologous to human URGCP (upregulator of cell proliferation); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; dioxygen.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498406; RGD1564681; similar to mitochondrial ribosomal protein S24; up-regulated gene 4; Urg4
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21480,594,637 - 80,638,972 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1480,594,633 - 80,619,888 (-)Ensembl
Rnor_6.01485,957,726 - 86,002,227 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,957,716 - 85,991,211 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,649,967 - 86,694,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,367,017 - 86,392,064 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1479,479,557 - 79,504,606 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (ISO)
nucleus  (IEA)

Molecular Function
GTP binding  (IEA)

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548  


Genomics

Comparative Map Data
Urgcp
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21480,594,637 - 80,638,972 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1480,594,633 - 80,619,888 (-)Ensembl
Rnor_6.01485,957,726 - 86,002,227 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1485,957,716 - 85,991,211 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01486,649,967 - 86,694,245 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41486,367,017 - 86,392,064 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1479,479,557 - 79,504,606 (-)NCBICelera
Cytogenetic Map14q21NCBI
URGCP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38743,875,913 - 43,926,726 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl743,875,894 - 43,926,411 (-)EnsemblGRCh38hg38GRCh38
GRCh37743,915,512 - 43,966,325 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36743,882,026 - 43,932,521 (-)NCBINCBI36hg18NCBI36
Celera743,905,366 - 43,955,861 (-)NCBI
Cytogenetic Map7p13NCBI
HuRef743,800,542 - 43,850,705 (-)NCBIHuRef
CHM1_1743,919,395 - 43,969,911 (-)NCBICHM1_1
T2T-CHM13v2.0744,034,204 - 44,085,026 (-)NCBI
CRA_TCAGchr7v2743,955,001 - 44,005,497 (-)NCBI
Urgcp
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39115,663,417 - 5,712,376 (-)NCBIGRCm39mm39
GRCm39 Ensembl115,663,417 - 5,712,376 (-)Ensembl
GRCm38115,713,417 - 5,762,376 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl115,713,417 - 5,762,376 (-)EnsemblGRCm38mm10GRCm38
MGSCv37115,613,420 - 5,662,379 (-)NCBIGRCm37mm9NCBIm37
MGSCv36115,614,188 - 5,641,153 (-)NCBImm8
Celera116,203,912 - 6,252,767 (-)NCBICelera
Cytogenetic Map11A1NCBI
URGCP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1740,408,771 - 40,421,002 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl740,405,063 - 40,421,002 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0740,324,724 - 40,375,428 (+)NCBIMhudiblu_PPA_v0panPan3
LOC610578
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha161,932,794 - 1,983,870 (-)NCBI
ROS_Cfam_1.01614,878,093 - 14,929,211 (+)NCBI
ROS_Cfam_1.0 Ensembl1614,905,538 - 14,929,211 (+)Ensembl
UNSW_CanFamBas_1.01614,509,260 - 14,560,323 (+)NCBI
UU_Cfam_GSD_1.01614,489,751 - 14,540,971 (+)NCBI
LOC100525140
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1848,780,576 - 48,821,582 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11848,780,521 - 48,817,058 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21853,469,534 - 53,527,955 (+)NCBISscrofa10.2Sscrofa10.2susScr3

Position Markers
D14Rat108  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,601,002 - 80,601,154 (+)MAPPERmRatBN7.2
Rnor_6.01485,964,092 - 85,964,243NCBIRnor6.0
Rnor_5.01486,656,332 - 86,656,484NCBIRnor5.0
RGSC_v3.41486,373,380 - 86,373,531UniSTSRGSC3.4
Celera1479,485,924 - 79,486,075UniSTS
RH 3.4 Map14573.5UniSTS
RH 3.4 Map14573.5RGD
RH 2.0 Map14706.8RGD
SHRSP x BN Map1445.59RGD
Cytogenetic Map14q21UniSTS
AA800188  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21480,594,975 - 80,595,097 (+)MAPPERmRatBN7.2
Rnor_6.01485,958,065 - 85,958,186NCBIRnor6.0
Rnor_5.01486,650,306 - 86,650,427UniSTSRnor5.0
RGSC_v3.41486,367,353 - 86,367,474UniSTSRGSC3.4
Celera1479,479,893 - 79,480,014UniSTS
RH 3.4 Map14576.9UniSTS
Cytogenetic Map14q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)146875779683368335Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147341532392554092Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532392554092Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147341532392554092Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:426
Count of miRNA genes:228
Interacting mature miRNAs:270
Transcripts:ENSRNOT00000016468
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 27 11 19 11 8 11 64 29 35 11 8
Low 30 30 30 10 6 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001077660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092050 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092051 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092052 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC128636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI285944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB720935 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB757259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB809919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN931704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN934843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  EX490902 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM041979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM044330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM046879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FM056971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000016468   ⟹   ENSRNOP00000016468
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1480,594,638 - 80,598,479 (-)Ensembl
Rnor_6.0 Ensembl1485,957,730 - 85,968,037 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076740   ⟹   ENSRNOP00000068129
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1480,594,633 - 80,619,888 (-)Ensembl
Rnor_6.0 Ensembl1485,957,716 - 85,982,771 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076811
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1485,960,906 - 85,991,211 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000076874   ⟹   ENSRNOP00000067978
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1480,594,633 - 80,619,888 (-)Ensembl
Rnor_6.0 Ensembl1485,957,729 - 85,982,794 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000094862   ⟹   ENSRNOP00000091693
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1480,594,633 - 80,607,579 (-)Ensembl
RefSeq Acc Id: NM_001077660   ⟹   NP_001071128
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21480,594,640 - 80,619,693 (-)NCBI
Rnor_6.01485,957,729 - 85,982,774 (-)NCBI
Rnor_5.01486,649,967 - 86,694,245 (-)NCBI
RGSC_v3.41486,367,017 - 86,392,064 (-)RGD
Celera1479,479,557 - 79,504,606 (-)RGD
Sequence:
RefSeq Acc Id: XM_006251312   ⟹   XP_006251374
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21480,594,640 - 80,638,912 (-)NCBI
Rnor_6.01485,957,729 - 86,002,227 (-)NCBI
Rnor_5.01486,649,967 - 86,694,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251313   ⟹   XP_006251375
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21480,594,640 - 80,638,972 (-)NCBI
Rnor_6.01485,957,729 - 86,002,227 (-)NCBI
Rnor_5.01486,649,967 - 86,694,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006251315   ⟹   XP_006251377
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21480,594,637 - 80,619,888 (-)NCBI
Rnor_6.01485,957,726 - 85,982,857 (-)NCBI
Rnor_5.01486,649,967 - 86,694,245 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092050   ⟹   XP_038947978
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21480,594,639 - 80,619,890 (-)NCBI
RefSeq Acc Id: XM_039092051   ⟹   XP_038947979
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21480,594,640 - 80,638,912 (-)NCBI
RefSeq Acc Id: XM_039092052   ⟹   XP_038947980
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21480,594,639 - 80,619,771 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001071128   ⟸   NM_001077660
- UniProtKB: A0A096MJ37 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251377   ⟸   XM_006251315
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006251375   ⟸   XM_006251313
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006251374   ⟸   XM_006251312
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000016468   ⟸   ENSRNOT00000016468
RefSeq Acc Id: ENSRNOP00000067978   ⟸   ENSRNOT00000076874
RefSeq Acc Id: ENSRNOP00000068129   ⟸   ENSRNOT00000076740
RefSeq Acc Id: XP_038947978   ⟸   XM_039092050
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947980   ⟸   XM_039092052
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947979   ⟸   XM_039092051
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000091693   ⟸   ENSRNOT00000094862
Protein Domains
VLIG-type G

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A096MJ37-F1-model_v2 AlphaFold A0A096MJ37 1-928 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699471
Promoter ID:EPDNEW_R9984
Type:initiation region
Name:Urgcp_1
Description:upregulator of cell proliferation
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01485,982,761 - 85,982,821EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564681 AgrOrtholog
BioCyc Gene G2FUF-15129 BioCyc
Ensembl Genes ENSRNOG00000012184 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000016468.6 UniProtKB/TrEMBL
  ENSRNOP00000067978 ENTREZGENE
  ENSRNOP00000067978.1 UniProtKB/TrEMBL
  ENSRNOP00000068129 ENTREZGENE
  ENSRNOP00000068129.2 UniProtKB/TrEMBL
  ENSRNOP00000091693.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000016468.6 UniProtKB/TrEMBL
  ENSRNOT00000076740 ENTREZGENE
  ENSRNOT00000076740.3 UniProtKB/TrEMBL
  ENSRNOT00000076874 ENTREZGENE
  ENSRNOT00000076874.3 UniProtKB/TrEMBL
  ENSRNOT00000094862.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.300 UniProtKB/TrEMBL
InterPro G_VLIG_dom UniProtKB/TrEMBL
  GTP1_OBG UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
KEGG Report rno:305493 UniProtKB/TrEMBL
NCBI Gene 305493 ENTREZGENE
PhenoGen Urgcp PhenoGen
PRINTS GTP1OBG UniProtKB/TrEMBL
PROSITE G_VLIG UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A096MJ37 ENTREZGENE, UniProtKB/TrEMBL
  A0A096MJH4_RAT UniProtKB/TrEMBL
  A0A8I6AE57_RAT UniProtKB/TrEMBL
  F1M5F4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-08-01 Urgcp  upregulator of cell proliferation  Urg4  up-regulated gene 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Urg4  up-regulated gene 4  RGD1564681_predicted  similar to mitochondrial ribosomal protein S24 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564681_predicted  similar to mitochondrial ribosomal protein S24 (predicted)  LOC498406  similar to mitochondrial ribosomal protein S24  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498406  similar to mitochondrial ribosomal protein S24      Symbol and Name status set to provisional 70820 PROVISIONAL