LOC120096523 (collagen alpha-1(III) chain-like) - Rat Genome Database

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Gene: LOC120096523 (collagen alpha-1(III) chain-like) Rattus norvegicus
Analyze
Symbol: LOC120096523
Name: collagen alpha-1(III) chain-like
RGD ID: 41022020
Description:
Type: protein-coding
RefSeq Status: MODEL
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814100,289,515 - 100,291,902 (+)NCBIGRCr8
mRatBN7.21496,088,255 - 96,090,655 (+)NCBImRatBN7.2mRatBN7.2
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC120096523
6 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039092577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_039092577   ⟹   XP_038948505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,289,515 - 100,291,902 (+)NCBI
mRatBN7.21496,088,255 - 96,090,655 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038948505 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_038948505   ⟸   XM_039092577


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14822 BioCyc
NCBI Gene LOC120096523 ENTREZGENE
PhenoGen LOC120096523 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-01-27 LOC120096523  collagen alpha-1(III) chain-like      Symbol and Name status set to provisional 70820 PROVISIONAL