Rps12l10 (ribosomal protein S12 like 10) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Rps12l10 (ribosomal protein S12 like 10) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps12l10 (Ensembl: LOC108352809)
Name: ribosomal protein S12 like 10 (Ensembl:40S ribosomal protein S12 pseudogene)
RGD ID: 11400929
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S12 pseudogene; 40S ribosomal protein S12-like; AABR07016578.1; LOC108352809; small ribosomal subunit protein eS12-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81499,219,308 - 99,228,071 (-)NCBIGRCr8
mRatBN7.21495,017,963 - 95,020,005 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1495,018,011 - 95,018,409 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.014105,066,994 - 105,078,033 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14105,069,167 - 105,069,565 (-)NCBIRnor6.0rn6Rnor6.0
Celera1494,032,274 - 94,041,293 (-)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rps12l10
12 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1470053989104886043Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1470053989104886043Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147341532395876975Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)147995092195876975Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)148205747195876975Rat
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)149255388695876975Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039092873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000067365   ⟹   ENSRNOP00000061370
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1495,018,011 - 95,018,409 (-)Ensembl
RefSeq Acc Id: XM_039092873   ⟹   XP_038948801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81499,219,308 - 99,228,071 (-)NCBI
mRatBN7.21495,017,963 - 95,020,005 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038948801 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000061370
  ENSRNOP00000061370.1
RefSeq Acc Id: XP_038948801   ⟸   XM_039092873
- UniProtKB: D4A9C8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000061370   ⟸   ENSRNOT00000067365
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9C8-F1-model_v2 AlphaFold D4A9C8 1-132 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11400929 AgrOrtholog
BioCyc Gene G2FUF-14843 BioCyc
Ensembl Genes ENSRNOG00000042277 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000067365.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1330.30 UniProtKB/TrEMBL
InterPro L30e-like UniProtKB/TrEMBL
  Ribosomal_L7Ae/L30e/S12e/Gad45 UniProtKB/TrEMBL
  Ribosomal_S12e UniProtKB/TrEMBL
NCBI Gene LOC108352809 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S12-RELATED UniProtKB/TrEMBL
  PTHR11843 UniProtKB/TrEMBL
Pfam Ribosomal_L7Ae UniProtKB/TrEMBL
PhenoGen Rps12l10 PhenoGen
PRINTS RIBSOMALS12E UniProtKB/TrEMBL
RatGTEx ENSRNOG00000042277 RatGTEx
Superfamily-SCOP SSF55315 UniProtKB/TrEMBL
UniProt D4A9C8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps12l10  ribosomal protein S12 like 10  LOC108352809  40S ribosomal protein S12 pseudogene  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC108352809  40S ribosomal protein S12 pseudogene  AABR07016578.1    Data merged from RGD:15004582 737654 PROVISIONAL
2019-11-08 AABR07016578.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-02 LOC108352809  40S ribosomal protein S12 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL