Aftph (aftiphilin) - Rat Genome Database

Name: Aftph
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Aftph (aftiphilin) Rattus norvegicus

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Symbol:

Aftph

Name:

aftiphilin

RGD ID:

1311920

Description:

Predicted to enable clathrin binding activity. Predicted to be involved in intracellular transport. Predicted to be located in Golgi apparatus; cytosol; and nucleoplasm. Predicted to be part of AP-1 adaptor complex. Predicted to be active in trans-Golgi network membrane. Orthologous to human AFTPH (aftiphilin); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305544; RGD1311920; similar to RIKEN cDNA 9130023F12 gene

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AFTPH (aftiphilin)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Aftph (aftiphilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Aftph (aftiphilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AFTPH (aftiphilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AFTPH (aftiphilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Aftph (aftiphilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AFTPH (aftiphilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AFTPH (aftiphilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Aftph (aftiphilin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Aftph (aftiphilin)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	AFTPH (aftiphilin)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	aftpha (aftiphilin a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	aftphb (aftiphilin b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Afti	Alliance	DIOPT (OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	Y45G5AM.9	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	aftph	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	99,072,761 - 99,127,006 (-)	NCBI		GRCr8
mRatBN7.2	14	94,871,429 - 94,925,625 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	94,871,429 - 94,925,376 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	99,218,007 - 99,271,876 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	100,458,294 - 100,512,167 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	96,925,754 - 96,979,628 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	104,921,633 - 104,975,763 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	104,922,282 - 104,960,141 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	104,652,711 - 104,706,840 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	101,482,829 - 101,536,786 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	101,502,063 - 101,540,513 (-)	NCBI
Celera	14	93,886,335 - 93,940,247 (-)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-nitropyrene (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,4-methylenedioxymethamphetamine (ISO)

3-chloropropane-1,2-diol (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3H-1,2-dithiole-3-thione (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Brodifacoum (EXP)

caffeine (ISO)

cannabidiol (ISO)

carbon nanotube (ISO)

casticin (ISO)

cefaloridine (EXP)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

doxorubicin (ISO)

ethanol (ISO)

fenthion (ISO)

fluoranthene (ISO)

flutamide (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

lead(0) (ISO)

methylmercury chloride (ISO)

oxaliplatin (EXP)

pentachlorophenol (ISO)

resveratrol (ISO)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular transport (IBA)

Cellular Component

AP-1 adaptor complex (IBA,ISO)

cytosol (ISO)

Golgi apparatus (ISO)

intracellular membrane-bounded organelle (ISO)

nucleoplasm (IEA,ISO)

trans-Golgi network membrane (IBA)

Molecular Function

clathrin binding (IBA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:15758025

Genomics

Comparative Map Data

Aftph
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	99,072,761 - 99,127,006 (-)	NCBI		GRCr8
mRatBN7.2	14	94,871,429 - 94,925,625 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	94,871,429 - 94,925,376 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	99,218,007 - 99,271,876 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	100,458,294 - 100,512,167 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	96,925,754 - 96,979,628 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	104,921,633 - 104,975,763 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	104,922,282 - 104,960,141 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	104,652,711 - 104,706,840 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	101,482,829 - 101,536,786 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	101,502,063 - 101,540,513 (-)	NCBI
Celera	14	93,886,335 - 93,940,247 (-)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

AFTPH
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	64,524,328 - 64,593,005 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	64,524,299 - 64,593,005 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	64,751,462 - 64,820,139 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	64,604,969 - 64,673,643 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	64,597,630 - 64,666,332 (+)	NCBI		Celera
Cytogenetic Map	2	p14	NCBI
HuRef	2	64,485,277 - 64,554,008 (+)	NCBI		HuRef
CHM1_1	2	64,682,610 - 64,751,288 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	64,533,766 - 64,602,433 (+)	NCBI		T2T-CHM13v2.0

Aftph
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	20,635,084 - 20,691,599 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	20,635,084 - 20,691,589 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	20,685,084 - 20,741,595 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	20,685,084 - 20,741,589 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	20,585,087 - 20,641,487 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	20,585,087 - 20,641,487 (-)	NCBI		MGSCv36	mm8
Celera	11	22,831,220 - 22,887,615 (-)	NCBI		Celera
Cytogenetic Map	11	A3.1	NCBI
cM Map	11	13.25	NCBI

Aftph
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	19,834,702 - 19,877,751 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	19,835,911 - 19,899,878 (-)	NCBI	ChiLan1.0	ChiLan1.0

AFTPH
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	61,806,842 - 61,874,811 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	61,810,793 - 61,878,746 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	64,591,970 - 64,659,953 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	65,714,858 - 65,782,876 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	65,714,858 - 65,782,868 (+)	Ensembl	panpan1.1		panPan2

AFTPH
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	64,104,511 - 64,171,341 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	64,109,993 - 64,170,434 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	63,991,948 - 64,058,800 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	65,112,733 - 65,179,757 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	65,112,664 - 65,179,078 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	64,794,085 - 64,860,900 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	65,103,059 - 65,169,118 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	65,395,811 - 65,462,662 (+)	NCBI		UU_Cfam_GSD_1.0

Aftph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	19,148,347 - 19,273,453 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	9,376,086 - 9,422,951 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	9,298,338 - 9,422,945 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AFTPH
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	77,351,881 - 77,422,238 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	77,351,872 - 77,422,854 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	81,192,690 - 81,262,572 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AFTPH
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	42,424,602 - 42,491,180 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	42,424,532 - 42,491,142 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	69,384,157 - 69,454,337 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Aftph
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624762	8,903,681 - 8,967,033 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Aftph
310 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	879
Count of miRNA genes:	248
Interacting mature miRNAs:	300
Transcripts:	ENSRNOT00000007215, ENSRNOT00000056944, ENSRNOT00000075219
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582201	Sffal2	Serum free fatty acids level QTL 2	4	0.0002	blood free fatty acid amount (VT:0001553)	serum free fatty acids level (CMO:0000547)	14	92553886	95876975	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
631213	Bw60	Body weight QTL60	4.51		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	79950921	95876975	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
4889951	Bss92	Bone structure and strength QTL 92	3.9		tibia area (VT:1000281)	tibia-fibula cortical bone total cross-sectional area (CMO:0001721)	14	82057471	95876975	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat

Markers in Region

RH132392

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	94,881,148 - 94,881,340 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	104,931,353 - 104,931,544	NCBI	Rnor6.0
Rnor_5.0	14	104,662,431 - 104,662,622	UniSTS	Rnor5.0
RGSC_v3.4	14	101,492,545 - 101,492,736	UniSTS	RGSC3.4
Celera	14	93,896,042 - 93,896,233	UniSTS
RH 3.4 Map	14	749.2	UniSTS
Cytogenetic Map	14	q22	UniSTS

RH141239

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	94,871,541 - 94,871,757 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	104,921,746 - 104,921,961	NCBI	Rnor6.0
Rnor_5.0	14	104,652,824 - 104,653,039	UniSTS	Rnor5.0
RGSC_v3.4	14	101,482,938 - 101,483,153	UniSTS	RGSC3.4
Celera	14	93,886,448 - 93,886,663	UniSTS
Cytogenetic Map	14	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001305127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251532	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599241	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599242	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092071	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273238	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492976	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ230354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056944 ⟹ ENSRNOP00000053783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	94,871,429 - 94,925,376 (-)	Ensembl
Rnor_6.0 Ensembl	14	104,922,282 - 104,960,141 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103072 ⟹ ENSRNOP00000085437

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	94,871,429 - 94,925,376 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000103613 ⟹ ENSRNOP00000082054

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	94,872,288 - 94,925,376 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109170 ⟹ ENSRNOP00000095783

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	94,872,528 - 94,925,376 (-)	Ensembl

RefSeq Acc Id:

NM_001305127 ⟹ NP_001292056

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	99,072,761 - 99,126,727 (-)	NCBI
mRatBN7.2	14	94,871,429 - 94,925,376 (-)	NCBI
Rnor_6.0	14	104,921,633 - 104,975,595 (-)	NCBI
Celera	14	93,886,335 - 93,940,247 (-)	NCBI

Sequence:

show sequence

GCGGCCGCCCGGGACGAGCCAGGCATACATTAATCACTGGAAGGCCGCTGAATAATGGAGCCAG
ACGTCATCAGAATGTACTCGTCGTCCCCCCCACCTCTGGACAACGGAGCAGAGGACGACGACGA
GGATGAGTTTGGGGAATTTGGTGGATTTTCAGAAGTCAGCCCTTCTGGTGTAGGGTTTGTTGAT
TTTGACACGCCAGATTATACTCGTTCCAAGGAAGACTTTGTACCTTCAAACCATTTTATGCCAA
TTGATGAATATTCAGAAAACGTAGACAGCCTTACAAGCCTTAAGTCCATTCAGAACGGTAAGGA
TAAGGACATCACTGCTGAACTTCCCACTCCTTCGAAAGGTCAGTCTGATGTTGTACTTTCTGCC
ACCAGCAAAGCAATGGTTCCATCTAAAGCTTTAGACACTCCCCTCTGTGGCAGGGAAAGCCTGG
GAGGTGTAGATAAAGGAGTGATGCAGGGACCAAGCACCGGGCAGCTCCCAAGTTTCTCTCCAGC
AGACTTTAGAACTGATACAAACATTGTCCACCAAACCACTCAGTTAGAGAGCTGCAACGGTGAG
AAGCCTGCCTGTCTGGAAGTTCTCACAAACGGGTTTGCAGGTGTGGAAACTGCAAATCCTCAGG
GGACAGAGGACCTGGACAGTGTGGCAGATTCAAAGGGATCGAGGCCTCTTAGCACCTCTTGTGG
CACCGAGTGCATTTTAGAGTCTGCAGCTAGTCCTGCTACGGAATTTGCAGATTTTTCTACATTT
TCCCAAACAGAAAGGACACAACTAGAAGAACTAGAATGTGCAGTTGTAAATGATGGTGATGCAC
TGACCATTCAGGGAAACAGCAAAAGCCACAGAGTCAAGGAGCTGAATTGTATGAAAGAAGTGAC
TTTGGGTGGGAGCTTTGCGGATACAGGGGACACTGAAAGAGAACATCAGGTCTGCGTCTCAGAC
TTCCATGCCATAGCTGACAGAGGGCTCAGTGTTGAAAAACAAGACCTTCAAACACTGCAACAGG
ATGAGTTTCTAAATTCAAGGATTCAGTCTGAGGCTTGGAGCTTGGTAGACTCAAATGAAAATTC
AGAAGCCATTAGGAGAGAACGGTGTAAAACTGAGGAAAATGACTTCTTTGTCGCTAAGTGTGCT
GACTTATCCATGGATTCTATTAAAACTTCTGATGTTAATGAAATTGGTTCTTCCAAAGAAGAAA
ATAGAAAGTTGACTAACCCCAAAAGCCCAAACCCTGATCCCACTGAAGAAAGTGTTTTGGATGA
TTCTGCTGCAAGCATGAAAAATGGTGACAGTTTTAACGGCTTTGTGACTTGCCACGATACCAAT
GAGGATGATTTTGGTGACTTTGGTACAGCCAGTGGCACCACTCCACCCTTTGTTACTAGTACTC
AAGATTCAATGAGTGACGTCACTTTTGAAGACTCCTCAGAGCATTTTCTACATTTTAGTGAACC
GGGTGATGATTTTGGAGAATTTGAGGATACAAATGCCATTTCTTGTCCAGAGGAAATGATATTT
ACTGAGTCCGACCTAAGACAGACTTCTGATGGCTTATCAGAGGAATGTCCATTGGAAGGAGAGT
CTGGTGGAAAAGACAGTGAACCCGACTCAAAACTGAAAAATGGTCAAGACGGTGAATTTGGAGA
TTTTGATTCTGTGCCAAATACTCAAGGGAGTGCTTTTCAAGACTCGGATGATTTTGCAGACTTC
AGTTCAGCAGGTCCTAGCCAAGCTGTCGACTGGAATGCTTTTGAGGATGAACAGAAAGACAGTT
GTTCTTGGGCTGCCTTTGGGGATCAGCAGGCAACTGAGTCTCATCATCGGAAGGAAGTCTGGCA
GTCACATAGGACAGATGGAACTCTGGACACCCTGGGGACCCCTAGGACGCACAGCGTCTCTTCA
GCAGCTTCCAAAGGAGCAGTTGCTAGTGGCCATCTGCAGGAGCCAGCCACTTCAGCTCAGACAG
CTTTACTGAACCGGTTGGAGAGGATTTTCGAAGCCTGTTTTCCTTCTGTATTCGTCCCTGATGC
CGAAGAGGAAGTTACTTCCCTGAAGCACTTGCTGGAGACAAACTACTCACCAGTAAAAGCAAGA
GAGGCCTTAGCTGAGTGTGGTGAGCTGCGGGATGTGTGGGCCGAACTGCAGGACATTCATGATG
CACATGGTCTGCGGTACCAGTGGGGCGGCTCACATAGCAACAAGAAGCTTCTGTGCTCCTTGGG
AATAGACACTCGAAACATTCTGTTCACTGGCAATAAGAAGCAACCTGTTATAGTGCCCATGTAC
GCAGCAGGATTGGGCATGTTAGAGCCCACCAAGGAGCCACTGAAACCACTGTCAGCTGCAGAAA
AAATTGCTTCTATTGGTCAGACAACCATTATGACACCAGAAATGAACACGTGTACATCTGATCC
ATTCCAGGAGTCTCTCCCACCTGTCCAGTTTGACTGGAGTAGCAGTGGCCTTACTAACCCTTTA
GATGGTGTGGATCCAGAGTTGTATGAATTAACAACTGCTAAGCTGGAGACCTCCACCTCAAGCC
TCAGAGTGACTGACGCATTTGCGAAGCTCATGTCTACAGTGGAAAAGACGAGCACGTCGACCAG
GAAACCAAAAAGGGAGGAGCACCTAAGCGAGGAGGCCGTGAAGGTGATCGTCAGCCTTCCGGAC
CTGACCTTCATGCACGCCAAGGTGCTGATGTTCCCGGCCACGCTCACGCCGTCCACGAGCTCTC
AAGGACAAGCAGATGCGTAGCTGCTCGTGTCGGAGGATCTGAAATTCTCTTTCCTTTCCTCCAG
CCCTTCCCATCATCAAAGGCATATCGTCTGTAATTAAAAATAAAAACATGCAAGCTCAGCTGAT
TGGTTGGTAAGCCACACTAGAAAGGTATACATAGTAATGTATATTTATTTACATACTGAAGTCC
TAAATTTATATAGAAAAATGTAAATAATTGGGGATGAACATTTTTGAAGATTTATTCTTTTGTG
TTGCTGGGGTGTATACATTTATGTCTTTGTGAAATACACTGGTGGTGTCCTTCTTAAAAACTTT
TGAAATAAAAAGAGAAAATTAAAACCTCAAATCTCCACTGTCTGAAATCCCCTTCAGTCTTTTC
CCTTTGCACTGACAGCTCTTAATTTCCCTGTCCTATGGTCTGTTGCTTTTACCTGTCACGCAAA
AGCTTCAGAATTCTTGTTTGGTTTTCAGTTTTGTGTGATGGGTTTGTTTCAGACCTGGCTTTTG
TTCTGTTTCCCGGGCTTTGTTGTCGTCTTTTTGTCAGGTGTATTGCTGTGTGTGACCTTCTCAG
AGGTCACTCCACTGATGCTCGCTGGTTGTGGGCCGGGATCACTGTCAGGACGTGACTGGAGGCT
TGACAGAGAATGTGCCTGTTTTAATTGGTGTGATTTGGAGAAGGACCAAATTATATGAATGTCT
TAAAATGAAATTTGTAGAGATCTTTCTGTTCTGTCATACCACTATTTTTTGAGGATTTTTGCAC
AGTGTAAAATGACATAATCCTAGATTGCTATGGTTTAGGCTGTATATACAGTAAAAAAACAAAA
AAACAAGCTGTGGGTTTTAAACGTTTGGGGCAATTCCTATGGAAGCAGGAGAGACATGTAGAAG
AACCTCTAACGGGTTAATATGCATGCCCAAGGGTTTTGAGATTTCAGTGTGTAAATTTCCTTTT
AGCTTATACAATAATAAAATAATTTAAAAGAAATTTA

hide sequence

RefSeq Acc Id:

XM_006251532 ⟹ XP_006251594

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	99,072,765 - 99,127,006 (-)	NCBI
mRatBN7.2	14	94,871,433 - 94,925,624 (-)	NCBI
Rnor_6.0	14	104,921,637 - 104,975,763 (-)	NCBI
Rnor_5.0	14	104,652,711 - 104,706,840 (-)	NCBI

Sequence:

show sequence

GGATGGGGGTCCCGCGGCAGCGCTGAAACTCCGGGTGGGCGTCCATGGCGCCGCGGCGCTGACA
GGGCTGGGAGCAGCTCCCCTTCCGCCCTCACCAGCTCAGCGTCCGAGTAACCGGTCCTTCCCCG
GGGAGCCAGTTCCTCCCCGGGCCGCCGAGCCATGCCCATCGCGGCCGCCCGGGACGAGCCAGGC
ATACATTAATCACTGGAAGGCCGCTGAATAATGGAGCCAGACGTCATCAGAATGTACTCGTCGT
CCCCCCCACCTCTGGACAACGGAGCAGAGGACGACGACGAGGATGAGTTTGGGGAATTTGGTGG
ATTTTCAGAAGTCAGCCCTTCTGGTGTAGGGTTTGTTGATTTTGACACGCCAGATTATACTCGT
TCCAAGGAAGACTTTGTACCTTCAAACCATTTTATGCCAATTGATGAATATTCAGAAAACGTAG
ACAGCCTTACAAGCCTTAAGTCCATTCAGAACGGTAAGGATAAGGACATCACTGCTGAACTTCC
CACTCCTTCGAAAGGTCAGTCTGATGTTGTACTTTCTGCCACCAGCAAAGCAATGGTTCCATCT
AAAGCTTTAGACACTCCCCTCTGTGGCAGGGAAAGCCTGGGAGGTGTAGATAAAGGAGTGATGC
AGGGACCAAGCACCGGGCAGCTCCCAAGTTTCTCTCCAGCAGACTTTAGAACTGATACAAACAT
TGTCCACCAAACCACTCAGTTAGAGAGCTGCAACGGTGAGAAGCCTGCCTGTCTGGAAGTTCTC
ACAAACGGGTTTGCAGGTGTGGAAACTGCAAATCCTCAGGGGACAGAGGACCTGGACAGTGTGG
CAGATTCAAAGGGATCGAGGCCTCTTAGCACCTCTTGTGGCACCGAGTGCATTTTAGAGTCTGC
AGCTAGTCCTGCTACGGAATTTGCAGATTTTTCTACATTTTCCCAAACAGAAAGGACACAACTA
GAAGAACTAGAATGTGCAGTTGTAAATGATGGTGATGCACTGACCATTCAGGGAAACAGCAAAA
GCCACAGAGTCAAGGAGCTGAATTGTATGAAAGAAGTGACTTTGGGTGGGAGCTTTGCGGATAC
AGGGGACACTGAAAGAGAACATCAGGTCTGCGTCTCAGACTTCCATGCCATAGCTGACAGAGGG
CTCAGTGTTGAAAAACAAGACCTTCAAACACTGCAACAGGATGAGTTTCTAAATTCAAGGATTC
AGTCTGAGGCTTGGAGCTTGGTAGACTCAAATGAAAATTCAGAAGCCATTAGGAGAGAACGGTG
TAAAACTGAGGAAAATGACTTCTTTGTCGCTAAGTGTGCTGACTTATCCATGGATTCTATTAAA
ACTTCTGATGTTAATGAAATTGGTTCTTCCAAAGAAGAAAATAGAAAGTTGACTAACCCCAAAA
GCCCAAACCCTGATCCCACTGAAGAAAGTGTTTTGGATGATTCTGCTGCAAGCATGAAAAATGG
TGACAGTTTTAACGGCTTTGTGACTTGCCACGATACCAATGAGGATGATTTTGGTGACTTTGGT
ACAGCCAGTGGCACCACTCCACCCTTTGTTACTAGTACTCAAGATTCAATGAGTGACGTCACTT
TTGAAGACTCCTCAGAGCATTTTCTACATTTTAGTGAACCGGGTGATGATTTTGGAGAATTTGA
GGATACAAATGCCATTTCTTGTCCAGAGGAAATGATATTTACTGAGTCCGACCTAAGACAGACT
TCTGATGGCTTATCAGAGGAATGTCCATTGGAAGGAGAGTCTGGTGGAAAAGACAGTGAACCCG
ACTCAAAACTGAAAAATGGTCAAGACGGTGAATTTGGAGATTTTGATTCTGTGCCAAATACTCA
AGGGAGTGCTTTTCAAGACTCGGATGATTTTGCAGACTTCAGTTCAGCAGGTCCTAGCCAAGCT
GTCGACTGGAATGCTTTTGAGGATGAACAGAAAGACAGTTGTTCTTGGGCTGCCTTTGGGGATC
AGCAGGCAACTGAGTCTCATCATCGGAAGGAAGTCTGGCAGTCACATAGGACAGATGGAACTCT
GGACACCCTGGGGACCCCTAGGACGCACAGCGTCTCTTCAGCAGCTTCCAAAGGAGCAGTTGCT
AGTGGCCATCTGCAGGAGCCAGCCACTTCAGCTCAGACAGCTTTACTGAACCGGTTGGAGAGGA
TTTTCGAAGCCTGTTTTCCTTCTGTATTCGTCCCTGATGCCGAAGAGGAAGTTACTTCCCTGAA
GCACTTGCTGGAGACAAACTACTCACCAGTAAAAGCAAGAGAGGCCTTAGCTGAGTGTGGTGAG
CTGCGGGATGTGTGGGCCGAACTGCAGGACATTCATGATGCACATGGTCTGCGGTACCAGTGGG
GCGGCTCACATAGCAACAAGAAGCTTCTGTGCTCCTTGGGAATAGACACTCGAAACATTCTGTT
CACTGGCAATAAGAAGCAACCTGTTATAGTGCCCATGTACGCAGCAGGATTGGGCATGTTAGAG
CCCACCAAGGAGCCACTGAAACCACTGTCAGCTGCAGAAAAAATTGCTTCTATTGGTCAGACAA
CCATTATGACACCAGAAATGAACACGTGTACATCTGATCCATTCCAGGAGTCTCTCCCACCTGT
CCAGTTTGACTGGAGTAGCAGTGGCCTTACTAACCCTTTAGATGCTAGTGGAGGTTCCGCTCTC
CTGAACCTTGATTTCTTTGGGCCCGTGGATGACAGTAGCTCTAGCAGCAGCACAATCCCAGGTG
TGGATCCAGAGTTGTATGAATTAACAACTGCTAAGCTGGAGACCTCCACCTCAAGCCTCAGAGT
GACTGACGCATTTGCGAAGCTCATGTCTACAGTGGAAAAGACGAGCACGTCGACCAGGAAACCA
AAAAGGGAGGAGCACCTAAGCGAGGAGGCCGTGAAGGTGATCGTCAGCCTTCCGGACCTGACCT
TCATGCACGCCAAGGTGCTGATGTTCCCGGCCACGCTCACGCCGTCCACGAGCTCTCAAGGACA
AGCAGATGCGTAGCTGCTCGTGTCGGAGGATCTGAAATTCTCTTTCCTTTCCTCCAGCCCTTCC
CATCATCAAAGGCATATCGTCTGTAATTAAAAATAAAAACATGCAAGCTCAGCTGATTGGTTGG
TAAGCCACACTAGAAAGGTATACATAGTAATGTATATTTATTTACATACTGAAGTCCTAAATTT
ATATAGAAAAATGTAAATAATTGGGGATGAACATTTTTGAAGATTTATTCTTTTGTGTTGCTGG
GGTGTATACATTTATGTCTTTGTGAAATACACTGGTGGTGTCCTTCTTAAAAACTTTTGAAATA
AAAAGAGAAAATTAAAACCTCAAATCTCCACTGTCTGAAATCCCCTTCAGTCTTTTCCCTTTGC
ACTGACAGCTCTTAATTTCCCTGTCCTATGGTCTGTTGCTTTTACCTGTCACGCAAAAGCTTCA
GAATTCTTGTTTGGTTTTCAGTTTTGTGTGATGGGTTTGTTTCAGACCTGGCTTTTGTTCTGTT
TCCCGGGCTTTGTTGTCGTCTTTTTGTCAGGTGTATTGCTGTGTGTGACCTTCTCAGAGGTCAC
TCCACTGATGCTCGCTGGTTGTGGGCCGGGATCACTGTCAGGACGTGACTGGAGGCTTGACAGA
GAATGTGCCTGTTTTAATTGGTGTGATTTGGAGAAGGACCAAATTATATGAATGTCTTAAAATG
AAATTTGTAGAGATCTTTCTGTTCTGTCATACCACTATTTTTTGAGGATTTTTGCACAGTGTAA
AATGACATAATCCTAGATTGCTATGGTTTAGGCTGTATATACAGTAAAAAAACAAAAAAACAAG
CTGTGGGTTTTAAACGTTTGGGGCAATTCCTATGGAAGCAGGAGAGACATGTAGAAGAACCTCT
AACGGGTTAATATGCATGCCCAAGGGTTTTGAGATTTCAGTGTGTAAATTTCCTTTTAGCTTAT
ACAATAATAAAATAATTTAAAAGAAA

hide sequence

RefSeq Acc Id:

XM_039092068 ⟹ XP_038947996

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	99,072,765 - 99,126,981 (-)	NCBI
mRatBN7.2	14	94,871,433 - 94,925,625 (-)	NCBI

RefSeq Acc Id:

XM_039092069 ⟹ XP_038947997

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	99,072,765 - 99,126,981 (-)	NCBI
mRatBN7.2	14	94,871,433 - 94,925,625 (-)	NCBI

RefSeq Acc Id:

XM_039092070 ⟹ XP_038947998

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	99,072,765 - 99,126,998 (-)	NCBI
mRatBN7.2	14	94,871,433 - 94,925,625 (-)	NCBI

RefSeq Acc Id:

XM_039092071 ⟹ XP_038947999

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	99,072,765 - 99,126,998 (-)	NCBI
mRatBN7.2	14	94,871,433 - 94,925,624 (-)	NCBI

RefSeq Acc Id:

XM_063273237 ⟹ XP_063129307

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	99,072,765 - 99,126,980 (-)	NCBI

RefSeq Acc Id:

XM_063273238 ⟹ XP_063129308

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	99,072,765 - 99,126,980 (-)	NCBI

RefSeq Acc Id:

XR_005492976

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	99,073,861 - 99,126,998 (-)	NCBI
mRatBN7.2	14	94,871,429 - 94,925,624 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001292056	(Get FASTA)	NCBI Sequence Viewer
	XP_006251594	(Get FASTA)	NCBI Sequence Viewer
	XP_038947996	(Get FASTA)	NCBI Sequence Viewer
	XP_038947997	(Get FASTA)	NCBI Sequence Viewer
	XP_038947998	(Get FASTA)	NCBI Sequence Viewer
	XP_038947999	(Get FASTA)	NCBI Sequence Viewer
	XP_063129307	(Get FASTA)	NCBI Sequence Viewer
	XP_063129308	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL97943	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053783.2
	ENSRNOP00000082054.1
	ENSRNOP00000085437.1
	ENSRNOP00000095783.1

RefSeq Acc Id:	XP_006251594 ⟸ XM_006251532
- Peptide Label:	isoform X1
- UniProtKB:	D3ZQQ1 (UniProtKB/TrEMBL), A6JQ26 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEPDVIRMYSSSPPPLDNGAEDDDEDEFGEFGGFSEVSPSGVGFVDFDTPDYTRSKEDFVPSNH FMPIDEYSENVDSLTSLKSIQNGKDKDITAELPTPSKGQSDVVLSATSKAMVPSKALDTPLCGR ESLGGVDKGVMQGPSTGQLPSFSPADFRTDTNIVHQTTQLESCNGEKPACLEVLTNGFAGVETA NPQGTEDLDSVADSKGSRPLSTSCGTECILESAASPATEFADFSTFSQTERTQLEELECAVVND GDALTIQGNSKSHRVKELNCMKEVTLGGSFADTGDTEREHQVCVSDFHAIADRGLSVEKQDLQT LQQDEFLNSRIQSEAWSLVDSNENSEAIRRERCKTEENDFFVAKCADLSMDSIKTSDVNEIGSS KEENRKLTNPKSPNPDPTEESVLDDSAASMKNGDSFNGFVTCHDTNEDDFGDFGTASGTTPPFV TSTQDSMSDVTFEDSSEHFLHFSEPGDDFGEFEDTNAISCPEEMIFTESDLRQTSDGLSEECPL EGESGGKDSEPDSKLKNGQDGEFGDFDSVPNTQGSAFQDSDDFADFSSAGPSQAVDWNAFEDEQ KDSCSWAAFGDQQATESHHRKEVWQSHRTDGTLDTLGTPRTHSVSSAASKGAVASGHLQEPATS AQTALLNRLERIFEACFPSVFVPDAEEEVTSLKHLLETNYSPVKAREALAECGELRDVWAELQD IHDAHGLRYQWGGSHSNKKLLCSLGIDTRNILFTGNKKQPVIVPMYAAGLGMLEPTKEPLKPLS AAEKIASIGQTTIMTPEMNTCTSDPFQESLPPVQFDWSSSGLTNPLDASGGSALLNLDFFGPVD DSSSSSSTIPGVDPELYELTTAKLETSTSSLRVTDAFAKLMSTVEKTSTSTRKPKREEHLSEEA VKVIVSLPDLTFMHAKVLMFPATLTPSTSSQGQADA hide sequence

RefSeq Acc Id:

NP_001292056 ⟸ NM_001305127

- UniProtKB:

A6JQ26 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEPDVIRMYSSSPPPLDNGAEDDDEDEFGEFGGFSEVSPSGVGFVDFDTPDYTRSKEDFVPSNH
FMPIDEYSENVDSLTSLKSIQNGKDKDITAELPTPSKGQSDVVLSATSKAMVPSKALDTPLCGR
ESLGGVDKGVMQGPSTGQLPSFSPADFRTDTNIVHQTTQLESCNGEKPACLEVLTNGFAGVETA
NPQGTEDLDSVADSKGSRPLSTSCGTECILESAASPATEFADFSTFSQTERTQLEELECAVVND
GDALTIQGNSKSHRVKELNCMKEVTLGGSFADTGDTEREHQVCVSDFHAIADRGLSVEKQDLQT
LQQDEFLNSRIQSEAWSLVDSNENSEAIRRERCKTEENDFFVAKCADLSMDSIKTSDVNEIGSS
KEENRKLTNPKSPNPDPTEESVLDDSAASMKNGDSFNGFVTCHDTNEDDFGDFGTASGTTPPFV
TSTQDSMSDVTFEDSSEHFLHFSEPGDDFGEFEDTNAISCPEEMIFTESDLRQTSDGLSEECPL
EGESGGKDSEPDSKLKNGQDGEFGDFDSVPNTQGSAFQDSDDFADFSSAGPSQAVDWNAFEDEQ
KDSCSWAAFGDQQATESHHRKEVWQSHRTDGTLDTLGTPRTHSVSSAASKGAVASGHLQEPATS
AQTALLNRLERIFEACFPSVFVPDAEEEVTSLKHLLETNYSPVKAREALAECGELRDVWAELQD
IHDAHGLRYQWGGSHSNKKLLCSLGIDTRNILFTGNKKQPVIVPMYAAGLGMLEPTKEPLKPLS
AAEKIASIGQTTIMTPEMNTCTSDPFQESLPPVQFDWSSSGLTNPLDGVDPELYELTTAKLETS
TSSLRVTDAFAKLMSTVEKTSTSTRKPKREEHLSEEAVKVIVSLPDLTFMHAKVLMFPATLTPS
TSSQGQADA

hide sequence

Ensembl Acc Id:

ENSRNOP00000053783 ⟸ ENSRNOT00000056944

RefSeq Acc Id:	XP_038947998 ⟸ XM_039092070
- Peptide Label:	isoform X3
- UniProtKB:	A6JQ26 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947997 ⟸ XM_039092069
- Peptide Label:	isoform X1
- UniProtKB:	D3ZQQ1 (UniProtKB/TrEMBL), A6JQ26 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947996 ⟸ XM_039092068
- Peptide Label:	isoform X1
- UniProtKB:	D3ZQQ1 (UniProtKB/TrEMBL), A6JQ26 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038947999 ⟸ XM_039092071
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A421 (UniProtKB/TrEMBL), A6JQ26 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000095783 ⟸ ENSRNOT00000109170

Ensembl Acc Id:

ENSRNOP00000082054 ⟸ ENSRNOT00000103613

Ensembl Acc Id:

ENSRNOP00000085437 ⟸ ENSRNOT00000103072

RefSeq Acc Id:	XP_063129308 ⟸ XM_063273238
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063129307 ⟸ XM_063273237
- Peptide Label:	isoform X2

Protein Domains

Aftiphilin clathrin-binding box

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZQQ1-F1-model_v2	AlphaFold	D3ZQQ1	1-932	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1311920	AgrOrtholog
BioCyc Gene	G2FUF-14850	BioCyc
Ensembl Genes	ENSRNOG00000005411	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000056944.6	UniProtKB/TrEMBL
	ENSRNOT00000103072.1	UniProtKB/TrEMBL
	ENSRNOT00000103613.1	UniProtKB/TrEMBL
	ENSRNOT00000109170.1	UniProtKB/TrEMBL
InterPro	Aftin-like	UniProtKB/TrEMBL
	Clathrin_bd	UniProtKB/TrEMBL
NCBI Gene	305544	ENTREZGENE
PANTHER	AFTIPHILIN	UniProtKB/TrEMBL
	PTHR16156	UniProtKB/TrEMBL
Pfam	Clathrin_bdg	UniProtKB/TrEMBL
PhenoGen	Aftph	PhenoGen
RatGTEx	ENSRNOG00000005411	RatGTEx
UniProt	A0A8I5ZX25_RAT	UniProtKB/TrEMBL
	A0A8I6A421	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AS48_RAT	UniProtKB/TrEMBL
	A6JQ26	ENTREZGENE, UniProtKB/TrEMBL
	D3ZQQ1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-27	Aftph	aftiphilin	RGD1311920_predicted	similar to RIKEN cDNA 9130023F12 gene (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-01-20	RGD1311920_predicted	similar to RIKEN cDNA 9130023F12 gene (predicted)	LOC305544_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC305544_predicted	similar to RIKEN cDNA 9130023F12 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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