Aftph (aftiphilin) - Rat Genome Database

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Gene: Aftph (aftiphilin) Mus musculus
Analyze
Symbol: Aftph
Name: aftiphilin
RGD ID: 1332280
MGI Page MGI
Description: Predicted to enable clathrin binding activity. Predicted to be involved in intracellular transport. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus; cytosol; and nucleoplasm. Predicted to be part of AP-1 adaptor complex. Predicted to be active in trans-Golgi network membrane. Orthologous to human AFTPH (aftiphilin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9130023F12Rik; AU015099; AU016543; AU018432; AU019184; AU044244; expressed sequence AU015099; RP23-452C23.3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,635,084 - 20,691,599 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1120,635,084 - 20,691,589 (-)EnsemblGRCm39 Ensembl
GRCm381120,685,084 - 20,741,595 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,685,084 - 20,741,589 (-)EnsemblGRCm38mm10GRCm38
MGSCv371120,585,087 - 20,641,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,585,087 - 20,641,487 (-)NCBIMGSCv36mm8
Celera1122,831,220 - 22,887,615 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.25NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
clathrin binding  (IBA,ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273  
PMID:15489334   PMID:15811338   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:21677750   PMID:21873635   PMID:32325033   PMID:32554809  


Genomics

Comparative Map Data
Aftph
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391120,635,084 - 20,691,599 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1120,635,084 - 20,691,589 (-)EnsemblGRCm39 Ensembl
GRCm381120,685,084 - 20,741,595 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1120,685,084 - 20,741,589 (-)EnsemblGRCm38mm10GRCm38
MGSCv371120,585,087 - 20,641,487 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361120,585,087 - 20,641,487 (-)NCBIMGSCv36mm8
Celera1122,831,220 - 22,887,615 (-)NCBICelera
Cytogenetic Map11A3.1NCBI
cM Map1113.25NCBI
AFTPH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38264,524,328 - 64,593,005 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl264,524,299 - 64,593,005 (+)EnsemblGRCh38hg38GRCh38
GRCh37264,751,462 - 64,820,139 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36264,604,969 - 64,673,643 (+)NCBINCBI36Build 36hg18NCBI36
Celera264,597,630 - 64,666,332 (+)NCBICelera
Cytogenetic Map2p14NCBI
HuRef264,485,277 - 64,554,008 (+)NCBIHuRef
CHM1_1264,682,610 - 64,751,288 (+)NCBICHM1_1
T2T-CHM13v2.0264,533,766 - 64,602,433 (+)NCBIT2T-CHM13v2.0
Aftph
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81499,072,761 - 99,127,006 (-)NCBIGRCr8
mRatBN7.21494,871,429 - 94,925,625 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1494,871,429 - 94,925,376 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1499,218,007 - 99,271,876 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.014100,458,294 - 100,512,167 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01496,925,754 - 96,979,628 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014104,921,633 - 104,975,763 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14104,922,282 - 104,960,141 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014104,652,711 - 104,706,840 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414101,482,829 - 101,536,786 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.114101,502,063 - 101,540,513 (-)NCBI
Celera1493,886,335 - 93,940,247 (-)NCBICelera
Cytogenetic Map14q22NCBI
Aftph
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542419,834,702 - 19,877,751 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542419,835,911 - 19,899,878 (-)NCBIChiLan1.0ChiLan1.0
AFTPH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21261,806,842 - 61,874,811 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A61,810,793 - 61,878,746 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A64,591,970 - 64,659,953 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A65,714,858 - 65,782,876 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A65,714,858 - 65,782,868 (+)Ensemblpanpan1.1panPan2
AFTPH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11064,104,511 - 64,171,341 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1064,109,993 - 64,170,434 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1063,991,948 - 64,058,800 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01065,112,733 - 65,179,757 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1065,112,664 - 65,179,078 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11064,794,085 - 64,860,900 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01065,103,059 - 65,169,118 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01065,395,811 - 65,462,662 (+)NCBIUU_Cfam_GSD_1.0
Aftph
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629219,148,347 - 19,273,453 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364919,376,086 - 9,422,951 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364919,298,338 - 9,422,945 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AFTPH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl377,351,881 - 77,422,238 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1377,351,872 - 77,422,854 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2381,192,690 - 81,262,572 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AFTPH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11442,424,602 - 42,491,180 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1442,424,532 - 42,491,142 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604569,384,157 - 69,454,337 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Aftph
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046247628,903,681 - 8,967,033 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Aftph
1735 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1994
Count of miRNA genes:720
Interacting mature miRNAs:886
Transcripts:ENSMUST00000035350, ENSMUST00000134517, ENSMUST00000134841, ENSMUST00000134897, ENSMUST00000146722, ENSMUST00000176585, ENSMUST00000176782, ENSMUST00000177014, ENSMUST00000177543
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10044008Hbnr15_mHeligmosomoides bakeri nematode resistance 15 (mouse)Not determined1122705234227232Mouse
4141582Lgaq1_mlate growth adjusted QTL 1 (mouse)Not determined1226863768500330Mouse
12801457Intmrm2_mintima/media ratio modifier 2 (mouse)111857861652578716Mouse
27226735Metcl16_mmetatarsal-calcaneal length 16, 16 week (mouse)11525000035090827Mouse
1300905Scc6_mcolon tumor susceptibility 6 (mouse)Not determined11688027789019734Mouse
10412216Eae44_mexperimental allergic encephalomyelitis susceptibility 44 (mouse)Not determined111226863739950840Mouse
1559002Lmrq4_mLeishmania major resistance QTL 4 (mouse)Not determined111226863769684947Mouse
1301765Skull15_mskull morphology 15 (mouse)Not determined11125976374Mouse
13524844Ppiq9_mprepulse inhibition QTL 9 (mouse)11904999735077325Mouse
4141966Tailq1_mtail length QTL 1 (mouse)Not determined1226863768500330Mouse
4142109W10q2_mweight 10 weeks QTL 2 (mouse)Not determined1226863768500330Mouse
1357851Scfq3_msubcutaneous fat pad weight QTL 3 (mouse)Not determined111226863768500330Mouse
1300990Bits3_mbitterness sensitivity 3 (mouse)Not determined11837212142372260Mouse
12801460Intim2_mintima modifier 2 (mouse)111857861652578716Mouse
27226798Scvln18_msacral vertebrae length 2, 16 week (mouse)11325000060690826Mouse
26884446Sklq10_mskull length QTL 10, 10 week (mouse)11325000062890826Mouse
26884453Sklq16_mskull length QTL 16, 16 week (mouse)11325000072690826Mouse
26884401Huml4_mhumerus length 4, 10 week (mouse)111155000068490826Mouse
27226762Feml21_mfemur length 21, 16 week (mouse)111175000065990826Mouse
1300938Bulb3_mbulb size 3 (mouse)Not determined111857861652578716Mouse
27095909Scvln6_msacral vertebrae length 2, 5 week (mouse)11325000044090827Mouse
27095904Scvln12_msacral vertebrae length 2, 10 week (mouse)11325000034495048Mouse
27226738Metcl11_mmetatarsal-calcaneal length 11, 10 week (mouse)11885000061390826Mouse
1357437Epfq4_mepididymal fat pad weight QTL 4 (mouse)Not determined111226863768500330Mouse
13208559Wght10_mweight 10 (mouse)11395000088890826Mouse
1357518Tgyl1_mtriglyceride level 1 (mouse)Not determined11688027733916219Mouse
13463479Mchq19_mmean corpuscular hemoglobin QTL 19 (mouse)111095123244951464Mouse
4142216Lgq1_mlate growth QTL 1 (mouse)Not determined1226863768500330Mouse
1357720Kidpq1_mkidney weight percentage QTL 1 (mouse)Not determined111226863768500330Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
14746971Manh70_mmandible shape 70 (mouse)111990589053905890Mouse
10053676Eae44a_mexperimental allergic encephalomyelitis susceptibility 44a (mouse)Not determined11450789621379532Mouse
10053687Eae6_msusceptibility to experimental allergic encephalomyelitis 6 (mouse)Not determined111778196668500330Mouse
1300579Thypr1_mthymocyte proliferative response 1 (mouse)Not determined111928257753282715Mouse
4141127W3q4_mweight 3 weeks QTL 4 (mouse)Not determined1226863768500330Mouse
4142308W6q3_mweight 6 weeks QTL 3 (mouse)Not determined111226863768500330Mouse
4141894Nidd6k_mNidd6 on KK-A (mouse)Not determined1912420496897826Mouse
1300768Tshp9_mtooth shape 9 (mouse)Not determined11125976374Mouse
13208558Lgth12_mbody length 12 (mouse)11395000094890826Mouse
1300661Lmr6_mleishmaniasis resistance 6 (mouse)Not determined11125976374Mouse
1300599Cocrb11_mcocaine related behavior 11 (mouse)Not determined11267035536671472Mouse
27226741Metcl5_mmetatarsal-calcaneal length 5, 5 week (mouse)11465000046290827Mouse
1357640Orq2_movulation rate QTL 2 (mouse)Not determined111226863768500330Mouse
1558945Orgwq8_morgan weight QTL 8 (mouse)Not determined111705617567078411Mouse
1302171Pgia28_mproteoglycan induced arthritis 28 (mouse)Not determined11890609742906218Mouse
13463472Mcvq15_mmean corpuscular volume QTL 15 (mouse)111095123244951464Mouse
4141470Egq4_mearly growth QTL 4 (mouse)Not determined1226863768500330Mouse
12801459Leuf1_mleukocyte filtration 1 (mouse)111857861652578716Mouse
1357722Vtbt11_mvertebral trabecular bone trait 11 (mouse)Not determined11123880487Mouse
4141047Nilac1_mnicotine induced locomotor activity 1 (mouse)Not determined11901178043011942Mouse

Markers in Region
AU015099  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,696,133 - 20,696,334UniSTSGRCm38
MGSCv371120,596,136 - 20,596,337UniSTSGRCm37
Celera1122,842,262 - 22,842,463UniSTS
Cytogenetic Map11A3.1UniSTS
Whitehead/MRC_RH11375.4UniSTS
RH136466  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,723,023 - 20,723,206UniSTSGRCm38
MGSCv371120,623,026 - 20,623,209UniSTSGRCm37
Celera1122,869,049 - 22,869,232UniSTS
Cytogenetic Map11A3.1UniSTS
RH136535  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,685,155 - 20,685,348UniSTSGRCm38
MGSCv371120,585,158 - 20,585,351UniSTSGRCm37
Celera1122,831,291 - 22,831,484UniSTS
Cytogenetic Map11A3.1UniSTS
AU016543  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,696,068 - 20,696,204UniSTSGRCm38
MGSCv371120,596,071 - 20,596,207UniSTSGRCm37
Celera1122,842,197 - 22,842,333UniSTS
Cytogenetic Map11A3.1UniSTS
Whitehead/MRC_RH11375.4UniSTS
AU044244  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,696,068 - 20,696,285UniSTSGRCm38
MGSCv371120,596,071 - 20,596,288UniSTSGRCm37
Celera1122,842,197 - 22,842,414UniSTS
Cytogenetic Map11A3.1UniSTS
Whitehead/MRC_RH11374.99UniSTS
UniSTS:236525  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,696,606 - 20,696,917UniSTSGRCm38
MGSCv371120,596,609 - 20,596,920UniSTSGRCm37
Celera1122,842,735 - 22,843,046UniSTS
Cytogenetic Map11A3.1UniSTS
UniSTS:224423  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381120,737,812 - 20,737,964UniSTSGRCm38
MGSCv371120,637,815 - 20,637,967UniSTSGRCm37
Celera1122,883,943 - 22,884,095UniSTS
Cytogenetic Map11A3.1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001252503 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001290545 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181411 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006514625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK018647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK035265 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK042681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK136815 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK150458 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL645599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL663115 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC004630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC052036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY066578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000035350   ⟹   ENSMUSP00000036778
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,635,084 - 20,691,589 (-)Ensembl
GRCm38.p6 Ensembl1120,685,084 - 20,741,589 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134517
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,653,307 - 20,662,250 (-)Ensembl
GRCm38.p6 Ensembl1120,703,307 - 20,712,250 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134841
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,635,981 - 20,642,802 (-)Ensembl
GRCm38.p6 Ensembl1120,685,981 - 20,692,802 (-)Ensembl
RefSeq Acc Id: ENSMUST00000134897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,658,627 - 20,662,230 (-)Ensembl
GRCm38.p6 Ensembl1120,708,627 - 20,712,230 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146722   ⟹   ENSMUSP00000121612
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,635,084 - 20,677,607 (-)Ensembl
GRCm38.p6 Ensembl1120,685,084 - 20,727,607 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176585
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,646,013 - 20,662,324 (-)Ensembl
GRCm38.p6 Ensembl1120,696,013 - 20,712,324 (-)Ensembl
RefSeq Acc Id: ENSMUST00000176782   ⟹   ENSMUSP00000134791
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,636,118 - 20,676,172 (-)Ensembl
GRCm38.p6 Ensembl1120,686,118 - 20,726,172 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177014   ⟹   ENSMUSP00000135450
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,635,716 - 20,677,142 (-)Ensembl
GRCm38.p6 Ensembl1120,685,716 - 20,727,142 (-)Ensembl
RefSeq Acc Id: ENSMUST00000177543   ⟹   ENSMUSP00000134991
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1120,635,742 - 20,691,455 (-)Ensembl
GRCm38.p6 Ensembl1120,685,742 - 20,741,455 (-)Ensembl
RefSeq Acc Id: NM_001252503   ⟹   NP_001239432
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,635,084 - 20,691,556 (-)NCBI
GRCm381120,685,084 - 20,741,556 (-)NCBI
Celera1122,831,220 - 22,887,687 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001290545   ⟹   NP_001277474
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,635,084 - 20,691,556 (-)NCBI
GRCm381120,685,084 - 20,741,556 (-)NCBI
Celera1122,831,220 - 22,887,687 (-)NCBI
Sequence:
RefSeq Acc Id: NM_181411   ⟹   NP_852076
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,635,084 - 20,691,556 (-)NCBI
GRCm381120,685,084 - 20,741,556 (-)NCBI
MGSCv371120,585,087 - 20,641,487 (-)RGD
Celera1122,831,220 - 22,887,687 (-)NCBI
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006514625   ⟹   XP_006514688
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391120,635,084 - 20,691,599 (-)NCBI
GRCm381120,685,084 - 20,741,595 (-)NCBI
Sequence:
RefSeq Acc Id: NP_852076   ⟸   NM_181411
- Peptide Label: isoform 1
- UniProtKB: Q3UU49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001239432   ⟸   NM_001252503
- Peptide Label: isoform 2
- UniProtKB: H3BJH7 (UniProtKB/TrEMBL),   Q3UU49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006514688   ⟸   XM_006514625
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001277474   ⟸   NM_001290545
- Peptide Label: isoform 3
- UniProtKB: Q5SSE6 (UniProtKB/Swiss-Prot),   Q99KJ1 (UniProtKB/Swiss-Prot),   Q80WT5 (UniProtKB/Swiss-Prot),   Q3UU49 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000135450   ⟸   ENSMUST00000177014
RefSeq Acc Id: ENSMUSP00000134991   ⟸   ENSMUST00000177543
RefSeq Acc Id: ENSMUSP00000121612   ⟸   ENSMUST00000146722
RefSeq Acc Id: ENSMUSP00000036778   ⟸   ENSMUST00000035350
RefSeq Acc Id: ENSMUSP00000134791   ⟸   ENSMUST00000176782
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q80WT5-F1-model_v2 AlphaFold Q80WT5 1-931 view protein structure

Promoters
RGD ID:6820301
Promoter ID:MM_KWN:6578
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour,   BoneMarrow_4Hour
Transcripts:OTTMUST00000011672
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361120,592,434 - 20,592,934 (-)MPROMDB
RGD ID:6820300
Promoter ID:MM_KWN:6580
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_2Hour
Transcripts:OTTMUST00000011670,   OTTMUST00000011671
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361120,612,011 - 20,612,511 (-)MPROMDB
RGD ID:6820299
Promoter ID:MM_KWN:6581
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000011669,   UC007IDG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361120,625,816 - 20,626,316 (-)MPROMDB
RGD ID:6820186
Promoter ID:MM_KWN:6583
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:AK082424_4930434J08RIK,   ENSMUST00000094376,   OTTMUST00000011668,   UC007IDI.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361120,640,696 - 20,641,927 (+)MPROMDB
RGD ID:8674060
Promoter ID:EPDNEW_M15060
Type:initiation region
Name:Aftph_2
Description:Mus musculus aftiphilin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15061  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381120,741,461 - 20,741,521EPDNEW
RGD ID:8674062
Promoter ID:EPDNEW_M15061
Type:initiation region
Name:Aftph_1
Description:Mus musculus aftiphilin , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M15060  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381120,741,612 - 20,741,672EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1923012 AgrOrtholog
Ensembl Genes ENSMUSG00000049659 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035350 ENTREZGENE
  ENSMUST00000035350.12 UniProtKB/Swiss-Prot
  ENSMUST00000146722 ENTREZGENE
  ENSMUST00000146722.9 UniProtKB/Swiss-Prot
  ENSMUST00000176782.2 UniProtKB/TrEMBL
  ENSMUST00000177014.8 UniProtKB/TrEMBL
  ENSMUST00000177543 ENTREZGENE
  ENSMUST00000177543.8 UniProtKB/TrEMBL
InterPro Aftin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:216549 UniProtKB/Swiss-Prot
MGD MGI:1923012 ENTREZGENE
NCBI Gene 216549 ENTREZGENE
PANTHER AFTIPHILIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR16156 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Clathrin_bdg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Aftph PhenoGen
UniProt AFTIN_MOUSE UniProtKB/Swiss-Prot
  H3BIZ9_MOUSE UniProtKB/TrEMBL
  H3BJH7 ENTREZGENE, UniProtKB/TrEMBL
  H3BKM5_MOUSE UniProtKB/TrEMBL
  Q3U8A4_MOUSE UniProtKB/TrEMBL
  Q3UU49 ENTREZGENE, UniProtKB/TrEMBL
  Q5SSE6 ENTREZGENE
  Q80WT5 ENTREZGENE
  Q8C993_MOUSE UniProtKB/TrEMBL
  Q99KJ1 ENTREZGENE
UniProt Secondary Q5SSE6 UniProtKB/Swiss-Prot
  Q99KJ1 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Aftph  aftiphilin  AU015099  expressed sequence AU015099  Data merged from RGD:1611590 737654 PROVISIONAL