Bss92 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Bss92 (Bone structure and strength QTL 92) Rattus norvegicus

Symbol: Bss92
Name: Bone structure and strength QTL 92
RGD ID: 4889951
Trait: tibia area   (VT:1000281)    
Measurement Type: tibia-fibula cortical bone total cross-sectional area   (CMO:0001721)    
LOD Score: 3.9
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01487,458,772 - 106,641,756RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01481,093,112 - 106,705,037RGDRnor5.0
RGSC_v3.41487,960,277 - 102,509,397RGDRGSC3.4
Cross Type: Not Available
Strains Crossed: GK/KyoSwe F344/DuCrlSwe 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
osteoporosis  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Measurement Method

Vertebrate Trait
tibia area  (IDA)

Rat Strain
F344/DuCrlSwe  (IEA)
GK/KyoSwe  (IEA)

References

References - curated
1. Lagerholm S, etal., Bone. 2010 Dec;47(6):1039-47. Epub 2010 Aug 10.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2494Ddcdopa decarboxylase149190591991996816Rat
2874Igfbp3insulin-like growth factor binding protein 3148745764787465374Rat
619736Rab1aRAB1A, member RAS oncogene family14104475082104500176Rat
3072Mdh1malate dehydrogenase 114106378349106393642Rat
69230Ppp3r1protein phosphatase 3, regulatory subunit B, alpha14100311224100360879Rat
2543Egfrepidermal growth factor receptor1499919485100104136Rat
1305566Upp1uridine phosphorylase 1148931423489334060Rat
1307414Lgalslgalectin-like14105047915105055421Rat
727882Pno1partner of NOB1 homolog14100364192100372760Rat
735146Slc1a4solute carrier family 1 member 414104582884104612417Rat
1305895Abca13ATP binding cassette subfamily A member 13148938451289876748Rat
1310210Ugp2UDP-glucose pyrophosphorylase 214106208174106249322Rat
1311199Peli1pellino E3 ubiquitin protein ligase 114106008086106062566Rat
1310826Actr2actin related protein 214104338486104375840Rat
1312002Coblcordon-bleu WH2 repeat protein149234194992497169Rat
1308373Cnrip1cannabinoid receptor interacting protein 114100217547100247235Rat
1309304Spred2sprouty-related, EVH1 domain containing 214104268362104290206Rat
1309101Cep68centrosomal protein 6814104501759104523330Rat
1307112Fignl1fidgetin-like 1149189590291904474Rat
1308269Plekpleckstrin14100151518100184192Rat
1309870Spata48spermatogenesis associated 48149155678291614099Rat
1309501WdpcpWD repeat containing planar cell polarity effector14106393959106759511Rat
628718Vps54VPS54 subunit of GARP complex14106153407106207715Rat
1563985Zpbpzona pellucida binding protein149136067091556406Rat
1564049Sertad2SERTA domain containing 214104786649104890022Rat
1311920Aftphaftiphilin14104921633104975763Rat
1563337LOC498414LRRGT00197149082295190864917Rat
1563863Wdr92WD repeat domain 9214100373129100394143Rat
1562776RGD1562776similar to ribosomal protein L36148887138988875610Rat
1564174Tns3tensin 3148867392288907874Rat
1333524Olr1806-psolfactory receptor pseudogene 180614102113068102113705Rat
1309073Fbxo48F-box protein 4814100129835100140400Rat
1333003Olr1827-psolfactory receptor pseudogene 182714101753371101753493Rat
1566234Grb10growth factor receptor bound protein 10149202185192122249Rat
1587626LOC688553hypothetical protein LOC688553148925310289272283Rat
1586609LOC686087similar to motile sperm domain containing 1148769948187701956Rat
1583879LOC691494similar to Reticulocalbin-1 precursor149453618794546337Rat
1564724Pkd1l1polycystin 1 like 1, transient receptor potential channel interacting148904794989193579Rat
1562979Ikzf1IKAROS family zinc finger 1149178228191867828Rat
1560957Etaa1l1Ewing tumor-associated antigen 1-like 1149719607997199067Rat
1566206LOC501396hypothetical protein LOC501396149432103094613150Rat
1560600C1dC1D nuclear receptor corepressor14100415645100427878Rat
1563894RGD1563894similar to mortality factor 4 like 1149047085390471678Rat
1582940LOC688967similar to CG31156-PB, isoform B149334736493357539Rat
1565227LOC301748similar to RIKEN cDNA 1700001E04149455289194644351Rat
1561286RGD1561286similar to glyceraldehyde-3-phosphate dehydrogenase149349415093495283Rat
1589624Vwc2von Willebrand factor C domain containing 2149120114191348219Rat
1591358LOC685655similar to CG7638-PA148950150489503401Rat
1587340Etaa1ETAA1 activator of ATR kinase14102290655102293674Rat
1585482Meis1Meis homeobox 114103182178103321809Rat
1589907Rpl38-ps2ribosomal protein L38, pseudogene 214104452887104453167Rat
1589839LOC690942similar to Spindlin-like protein 3 (SPIN-3) (Protein DXF34)149640699396407678Rat
1590908LOC302228similar to Spindlin-like protein 2 (SPIN-2)149629633096303468Rat
1596197Vstm2aV-set and transmembrane domain containing 2A149952899699558304Rat
1596170Sec61gSEC61 translocon subunit gamma149977458999780964Rat
1595639LOC503350similar to reticulocalbin149434635494347712Rat
1591079LOC689548similar to ribosomal protein S214104031887104032575Rat
1591975Sun3Sad1 and UNC84 domain containing 3148921538689253585Rat
1591976Hus1HUS1 checkpoint clamp component148919408689208825Rat
1595841LOC364211similar to Alpha-centractin (Centractin) (Centrosome-associated actin homolog) (Actin-RPV) (ARP1)14104320794104322074Rat
1597113LOC364198similar to Phosphoglucomutase-1 (Glucose phosphomutase 1) (PGM 1)149161954691621201Rat
2318182LOC100362406mCG51413-like148794558387946203Rat
2320735Pom121l12POM121 transmembrane nucleoporin-like 12149768608897687756Rat
2321635LOC100364123glyceraldehyde-3-phosphate dehydrogenase-like149809593298096903Rat
2320935LOC100361025protein arginine methyltransferase 1-like149304096793042219Rat
2323208LOC100363335heterogeneous nuclear ribonucleoprotein K-like14100513753100515443Rat
2323351LOC100363290hypothetical protein LOC10036329014100400357100400816Rat
2320503LOC100361260ribosomal protein L31-like14104026170104026565Rat
2323556LOC100363039Rabring 7149789468897902030Rat
2323677LOC100359517ribosomal protein S27-like14104396613104451972Rat
2323894LOC100362885hypothetical LOC100362885149760875797614893Rat
2324806LOC100363083COP9 signalosome subunit 8149943218499432853Rat
6489785LOC100911950uncharacterized LOC10091195014104612764104618551Rat
6491888LOC100911576heterogeneous nuclear ribonucleoproteins C1/C2-like148854363088574207Rat
6502321LOC100909672uncharacterized LOC10090967214105832205105868961Rat
7501081LOC102555492zinc finger protein 120-like149867122998681907Rat
7502494LOC102553003uncharacterized LOC102553003149244426892471364Rat
7502675LOC102547434uncharacterized LOC10254743414104571867104581278Rat
7508556LOC10255162960S ribosomal protein L21-like14102507778102508314Rat
7519564LOC102553859uncharacterized LOC102553859149428007894281245Rat
7662247LOC102552528uncharacterized LOC102552528149130298291313288Rat
7666146LOC10254999260S ribosomal protein L21-like14101129618101130154Rat
7636041LOC102557304uncharacterized LOC102557304148890962488911551Rat
7623242LOC102554296uncharacterized LOC102554296149572479695733731Rat
7655756LOC102554771guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2-like149598455395985389Rat
7628157LOC102549056uncharacterized LOC10254905614105144405105149614Rat
7658931LOC102549500uncharacterized LOC10254950014106293161106300080Rat
7561491LOC102555192uncharacterized LOC102555192148848875288520863Rat
7582242LOC102547136uncharacterized LOC10254713614105914825105919660Rat
7606982LOC102551829uncharacterized LOC10255182914103951453103952762Rat
7567433LOC102548772uncharacterized LOC10254877214105078450105085243Rat
7704924LOC102547058uncharacterized LOC10254705814105898992105900404Rat
7712265LOC102552090glyceraldehyde-3-phosphate dehydrogenase-like148940469589405716Rat
7731769LOC102553529uncharacterized LOC102553529149396829193983265Rat
7713719LOC102548633zinc finger protein 729-like149875599098759670Rat
7743232LOC102552764uncharacterized LOC102552764149213137292150507Rat
7698765LOC102549235uncharacterized LOC10254923514105908521105916081Rat
7747850LOC102547925uncharacterized LOC10254792514104709528104715761Rat
7729069LOC102556662uncharacterized LOC102556662149432103094338386Rat
7729728LOC102554025uncharacterized LOC102554025148768759787695441Rat
9175426LOC103693205uncharacterized LOC10369320514104133427104138280Rat
9159199LOC103693787uncharacterized LOC103693787149452858494529398Rat
9115893LOC103693175uncharacterized LOC103693175149200525692051990Rat
9198151LOC103693795splicing regulatory glutamine/lysine-rich protein 1-like14105237049105240280Rat
9215803LOC103693789uncharacterized LOC103693789149793149097969409Rat
9220236LOC103693221uncharacterized LOC10369322114105427992105495839Rat
9271216LOC103693791uncharacterized LOC10369379114106542335106548715Rat
9281506LOC103690742uncharacterized LOC103690742149455368294555627Rat
9328351LOC103693793Y-linked testis-specific protein 1-like149650112596501840Rat
9253251LOC103693171uncharacterized LOC103693171148891128088921637Rat
9256478LOC103693200uncharacterized LOC103693200149295156192961624Rat
9300425LOC103693215uncharacterized LOC10369321514106564303106568269Rat
9301616LOC103693204uncharacterized LOC10369320414103329130103337937Rat
9261214LOC103693169uncharacterized LOC103693169148766782187673432Rat
9302610LOC103693214uncharacterized LOC10369321414106243141106248266Rat
9302896LOC103693788uncharacterized LOC103693788149437445394375227Rat
9364262LOC103693170uncharacterized LOC103693170148766770287729472Rat
9426181LOC103693794ewing's tumor-associated antigen 1 homolog14102296139102301897Rat
9427741LOC103693220uncharacterized LOC10369322014105353480105361911Rat
9391524LOC103693208uncharacterized LOC10369320814104717816104726288Rat
9473174LOC103693792guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 pseudogene149599300395993838Rat
9406654LOC103693201uncharacterized LOC1036932011499999536100010941Rat
9449916LOC103693778uncharacterized LOC103693778149242983092436451Rat
9410462LOC103693172uncharacterized LOC103693172148890272388907241Rat
9420305LOC103693786uncharacterized LOC103693786149453088994532099Rat
11361306LOC108352805uncharacterized LOC10835280514101146220101167224Rat
11455995LOC10835286140S ribosomal protein S28 pseudogene14104987686104987995Rat
11456686LOC108352803uncharacterized LOC108352803149865976999111047Rat
11446143LOC108352810uncharacterized LOC10835281014105777944105782829Rat
11465312LOC108352859uncharacterized LOC10835285914102648022102654532Rat
11466963LOC108352806uncharacterized LOC10835280614103436523103454273Rat
11470775LOC108352793uncharacterized LOC108352793148818316088185859Rat
11474186LOC108352796uncharacterized LOC108352796148896560388969071Rat
11457748LOC108352794uncharacterized LOC108352794148822831388235490Rat
11364710Trnar-ucu6transfer RNA arginine (anticodon UCU) 6149265592992656015Rat
11437269LOC108352797uncharacterized LOC108352797149038186690437477Rat
11372689LOC108352800uncharacterized LOC108352800149304343193057589Rat
11426172LOC10835279860S ribosomal protein L9 pseudogene149124297191243581Rat
11397988LOC108352836formin-like protein 714105055437105058477Rat
11386290LOC108352801uncharacterized LOC108352801149411970694151360Rat
11410540LOC108352802uncharacterized LOC108352802149432460994341433Rat
11400929LOC10835280940S ribosomal protein S12 pseudogene14105066994105078033Rat
11402135LOC108352862uncharacterized LOC10835286214105338625105353246Rat
11402271LOC10835285860S ribosomal protein L35a pseudogene148936766089368069Rat
11379724LOC108352804uncharacterized LOC108352804149990407499906686Rat
11394210LOC108352808uncharacterized LOC10835280814104620946104624854Rat
11479759LOC108352860uncharacterized LOC10835286014102907501102917601Rat
11509257LOC108352807uncharacterized LOC10835280714104612769104618366Rat
11512918LOC108352799uncharacterized LOC108352799149241475792416527Rat
11486863LOC108352795uncharacterized LOC108352795148837164988464673Rat
11493961LOC108348221ewing's tumor-associated antigen 1 homolog pseudogene14102293823102295689Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10773D14Mit10260148745877287459035Ratregion
33965D14Mit15193148911707289117264Ratregion
36307D14Rat21141149995036199950491Ratregion
37660D14Rat4915314100499335100499497Ratregion
35897D14Rat2217814106641587106641756Ratregion
38016D14Rat51193148896342788963621Ratregion
40406D14Rat10913614103885359103885494Ratregion
40140D14Rat9517314105074174105074364Ratregion
38806D14Rat67145148897404488974185Ratregion
39030D14Rat3820014102549183102549388Ratregion
39310D14Rat34228149907447999074709Ratregion
42394D14Rat137219148989298489893201Ratregion
42395D14Rat13813014104718544104718673Ratregion
42396D14Rat13921314103504569103504779Ratregion
41138D14Rat94235148887072488870994Ratregion
45190D14Got66177149277905092779226Ratregion
45191D14Got63193149381277093812962Ratregion
45191D14Got63193149381238693812962Ratregion
45192D14Got67171149361526593615435Ratregion
45194D14Got6594149259946592599558Ratregion
45205D14Got87158148887692488877081Ratregion
45206D14Got62200149187546591875661Ratregion
45207D14Got64159149150298391503141Ratregion
60076D14Got7924914100844551100844799Ratregion
60076D14Got7924914100710478100710726Ratregion
60077D14Got8113614103817262103817395Ratregion
60078D14Got83217149941361399413826Ratregion
60079D14Got8418914101052073101052261Ratregion
60080D14Got8514014102953505102953642Ratregion
60082D14Got8814614102968891102969036Ratregion
625817D14Got8229514103113172103113466Ratregion
62442D14Uia3195149178569391785887Ratregion
66465D14Mco15229148745878787459035Ratregion
66571D14Mco523314103778284103778534Ratregion
67232D14Arb19215148936797389368187Ratregion
67234D14Arb21148745881987459012Ratregion
1630365D14Got13125514102639850102640104Ratregion
1632095D14Got123293149896029598960587Ratregion
1628905D14Got135197149338673993386937Ratregion
1638917D14Got165300149403611594036414Ratregion
1641382D14Got16812114103088518103088638Ratregion
1633040D14Got126125149036097790361089Ratregion
1640481D14Got167200149402986194030060Ratregion
1635036D14Got12418014102656094102656272Ratregion
5035731RH1268311114104889221104889331Ratregion
7206628Slc1a499914104582191104583189Ratregion
5036414Mor24714106380703106381172Ratregion
5036571AU048469279148845754188457807Ratregion
5036879AU04949526014105883147105883406Ratregion
5036953AU04973513214103882881103883014Ratregion
5036993AU04985217914100215094100215273Ratregion
5037067WI-1317611214104501434104501545Ratregion
5025954RH130337181149234300292343182Ratregion
5026080RH130833210149190922891909437Ratregion
5031456AU04826316714100130598100130764Ratregion
5028889RH14271011814105026860105026976Ratregion
5034307UniSTS:22608413814106061135106061272Ratregion
5032223AF07684594148919772189197814Ratregion
5032301AI84338996148950373189503826Ratregion
5029773BE10252022014105658127105658346Ratregion
5029977BI285876220149304098393041202Ratregion
5030003BF38854722114103328478103328698Ratregion
5033099RH137594196149181459091814785Ratregion
5033241RH138107143149918964399189785Ratregion
5028097X7898716114100098558100098718Ratregion
5054029RH142989190149190389291904081Ratregion
5056945RH14467117714104345231104345407Ratregion
5054281RH143134170149190599991906168Ratregion
5054353RH14317514214100363764100363905Ratregion
5058550BE10201517014104669420104669589Ratregion
5056143RH144208264149252105092521313Ratregion
5052373X9559118414100425354100425537Ratregion
5059734AI5568039414100151627100151720Ratregion
5059786BE097865172149234197992342150Ratregion
5059110BI27841416014105551096105551255Ratregion
5057768BF38615916214104503265104503426Ratregion
5057816BI27719215214100391678100392391Ratregion
5053717RH142810299149215191292152210Ratregion
5052661RH142192186149991809899918283Ratregion
5054245RH143114194148879518088795373Ratregion
5054719RH14338613514104339588104339722Ratregion
5050966RH13436120214106379201106380655Ratregion
5043562RH130096181148919413889194318Ratregion
5046168RH13159721014105084926105085135Ratregion
5041688RH12900120914100246884100247092Ratregion
5045306RH13110221914104614350104614569Ratregion
5047550RH13239219214104931353104931544Ratregion
5046186RH13160819814100364762100364959Ratregion
5047614RH13242919614100425658100425853Ratregion
5046604RH131849188148933385789334044Ratregion
5049198RH13334220814104339044104339251Ratregion
5049344RH13342719614106208257106208452Ratregion
5049722RH13364421014100393863100394072Ratregion
5047240RH132214186149953518499535369Ratregion
5042144RH12926518014104889770104889949Ratregion
7192181Rab121714104497516104497732Ratregion
5040360RH12823820614104618074104618279Ratregion
5072624RH136957217149459868094598896Ratregion
5075622RH138701192149955588599556076Ratregion
5076320RH13910716114104340379104340539Ratregion
5076330RH13911313614104492118104492253Ratregion
5074650RH13813918814106168316106168503Ratregion
5080590RH14166820014104885773104885973Ratregion
5077412RH13974118614100100524100100709Ratregion
5075108RH138403155149953447199534625Ratregion
5077764RH139945206148867594688676151Ratregion
5077434RH139754208149186946491869671Ratregion
5079850RH14123921514104921746104921961Ratregion
5080208RH14144718914106062310106062497Ratregion
5073852RH137676134149955718599557318Ratregion
5073974RH13774616514104470602104470766Ratregion
5074302RH137938234148889499488895227Ratregion
5067386AU047785131149257661492576744Ratregion
5067884AU047478207148844873288449044Ratregion
5068424AU047153165149794310997943268Ratregion
5068498AU04710917014104225144104225313Ratregion
5069985RH94401188149190910391909290Ratregion
5068756AU046951104149322606493226167Ratregion
5068766AU046945184149509274595092912Ratregion
5069388AU046532179149761519997615372Ratregion
5070502D11Ertd676e19814106061379106061576Ratregion
5062182BF397527239148903702589037263Ratregion
5061860AW53390618914104875520104875709Ratregion
5063924BE120256156149248365692483811Ratregion
5063978BE12036011114106378248106378358Ratregion
5060738BF38905715214103218518103218669Ratregion
5062860BI29522921114100363100100363310Ratregion
5062962BE11350420514100360958100361162Ratregion
5061628BF396931193149995514399955335Ratregion
5061668BF4023989714106213797106213893Ratregion
5086145AI45414818014106206598106206777Ratregion
5087392BQ19476716214106052917106053078Ratregion
5089775AU04935615514106563499106563653Ratregion
5089355AU049107113149804064398040759Ratregion
5090839AU049993196149591868195918859Ratregion
5089993AU049486133148801262888012760Ratregion
5088003Meis115414103182513103182666Ratregion
5088361AU04852313014100880901100881030Ratregion
5090077AU04953618614102365131102365316Ratregion
5082493BE119538181148908917689089356Ratregion
5082545BE11967714114105048134105048274Ratregion
5083275BI2759139314104513130104513222Ratregion
5083355AA8184379014104341033104341122Ratregion
5086562AA891734191148867437788674567Ratregion
5081701BF408245147149190718191907326Ratregion
5085920AA99666911114100098929100099039Ratregion
5083889AA893195121148927295289273072Ratregion
5503688MEIS1_782574714103182017103182763Ratregion
5503803UniSTS:471314379148746001387461638Ratregion
5503890SRCR23H933149747517997476114Ratregion
5504276D2S1567E8914106379241106379941Ratregion
5504664PMC343796P113314103319023103319155Ratregion
5504805Hrmt1l2212149304195193042162Ratregion
5506290AFM324xh5861149233790692338766Ratregion
5506819G46230234148899572288995955Ratregion
5507267fb79b101407148837164088373046Ratregion
5507295fb82h10.x1916149572966795730791Ratregion
5500067UniSTS:236520158149189734091897497Ratregion
5502770PELI116514106062308106062472Ratregion
Position Markers

Flank 1: (D14Mit10)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01487,458,772 - 87,459,035NCBI
Rnor_5.01481,093,112 - 81,093,375UniSTS
RGSC_v3.41487,960,278 - 87,960,541UniSTS
RGSC_v3.41487,960,277 - 87,960,541RGD
RGSC_v3.11487,979,422 - 87,979,686RGD
Celera1481,131,893 - 81,132,138UniSTS
Cytogenetic Map14q21UniSTS
RH 3.4 Map14602.4UniSTS
RH 3.4 Map14602.4RGD
RH 2.0 Map14719.4RGD
Flank 2: (D14Rat22)
Rat AssemblyChrPosition (strand)Source
Rnor_6.014106,641,587 - 106,641,756NCBI
Rnor_5.014106,704,868 - 106,705,037UniSTS
RGSC_v3.414102,509,227 - 102,509,397RGD
RGSC_v3.414102,509,228 - 102,509,397UniSTS
RGSC_v3.114102,528,439 - 102,528,608RGD
Celera1494,880,114 - 94,880,283UniSTS
Cytogenetic Map14q22UniSTS
RH 3.4 Map14758.0UniSTS
RH 3.4 Map14758.0RGD
RH 2.0 Map14823.7RGD
SHRSP x BN Map1466.2099RGD
FHH x ACI Map1475.96RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1412680424106641756Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1442442731108833671Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)1443910761105074364Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1451818462105074364Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1460980905105980905Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1460980905105980905Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)146187332388870994Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1461993178106993178Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1463548095108548095Rat
70153Bp59Blood pressure QTL 593.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)147339146788870994Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1478172765102549388Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)1478172765102549388Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1478172765102549388Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1478172765102549388Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1478172765106641756Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1478446303110402569Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1480049285115493446Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1480049285115493446Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1485307663106641756Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)1487458772106641756Rat
1582201Sffal2Serum free fatty acids level QTL 240.0002blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)14102549183106641756Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general number of animals used: 19 parental GK, 20 parental F344, 37 F1 and 206 F2 rats 4889918
qtl_general lineage: F1 animals from both the reciprocal crosses were taken; 2 seperate F2 intercrosses were generated one from grandmaternal GK and grandpaternal F344 other from grandmaternal F344 and grandpaternal GK 4889918
qtl_general measurement method: at 4 months of age rats were given a fat enriched diet after 90 days they were sacrificed and left tibia was scanned in a CT unit (Somatom Sensation 64, Siemens Ag, Erlangen, Germany) 4889918
qtl_general software used: images were scanned Analyze version 5.0 4889918
qtl_general this region (72-84 cM) is determined only in F2 males 4889918