Rpl28l3 (ribosomal protein L28 like 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rpl28l3 (ribosomal protein L28 like 3) Rattus norvegicus
Analyze
Symbol: Rpl28l3
Name: ribosomal protein L28 like 3
RGD ID: 1585117
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L28-like; large ribosomal subunit protein eL28-like; LOC690096; similar to ribosomal protein L28
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr814100,765,761 - 100,766,321 (+)NCBIGRCr8
mRatBN7.21496,556,449 - 96,567,568 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.014107,349,377 - 107,365,061 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.014107,411,898 - 107,412,517 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.414103,209,119 - 103,209,671 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1495,553,398 - 95,554,719 (+)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat


Expression

RNA-SEQ Expression


Sequence


RefSeq Acc Id: XM_063273846   ⟹   XP_063129916
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr814100,765,761 - 100,766,321 (+)NCBI
Protein Sequences
Protein RefSeqs XP_063129916 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_063129916   ⟸   XM_063273846


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-14815 BioCyc
NCBI Gene 690096 ENTREZGENE
PhenoGen Rpl28l3 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rpl28l3  ribosomal protein L28 like 3  LOC690096  similar to ribosomal protein L28  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC690096  similar to ribosomal protein L28  LOC682368  similar to ribosomal protein L28  Data merged from RGD:1584581 1643240 APPROVED
2006-11-19 LOC690096  similar to ribosomal protein L28      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC682368  similar to ribosomal protein L28      Symbol and Name status set to provisional 70820 PROVISIONAL