Coatc1 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Coatc1 (Coat color QTL1) Rattus norvegicus

Symbol: Coatc1
Name: Coat color QTL1
RGD ID: 2313397
Trait: coat/hair pigmentation trait   (VT:0010463)    
Measurement Type: coat/hair color measurement   (CMO:0001808)    
LOD Score: Not Available
P Value: Not Available
Variance: 7.0
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21418,541,332 - 63,541,332RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01420,189,386 - 65,189,386RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01419,985,846 - 64,985,846RGDRnor5.0
RGSC_v3.41421,150,250 - 66,150,250RGDRGSC3.4
Cross Type: intercross
Strains Crossed: Wild/Nov 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
Wild/Nov  (IEA)

References

References - curated
1. Albert FW, etal., Genetics. 2009 Jun;182(2):541-54. Epub 2009 Apr 10.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2667GcGC, vitamin D binding protein141863214618667563Rat
40949335LOC120096525signal recognition particle 19 kDa protein-like141876858218769192Rat
1565243LOC498339LRRGT00190141882112418839758Rat
68936Slc4a4solute carrier family 4 member 4141884128919293297Rat
620667Dckdeoxycytidine kinase141930521819326247Rat
1305114Mob1bMOB kinase activator 1B141933305819365845Rat
1310858Grsf1G-rich RNA sequence binding factor 1141941294419429364Rat
1565242Rufy3RUN and FYVE domain containing 3141943153019506531Rat
7489037Mir6321microRNA 6321141945931719459457Rat
1308540Utp3UTP3, small subunit processome component141951571619517370Rat
1561381RGD1561381similar to microsomal glutathione S-transferase 3141952550919526128Rat
1310155Jchainjoining chain of multimeric IgA and IgM141953856019546384Rat
1306796Enamenamelin141955672919581433Rat
2101Ambnameloblastin141960176119614382Rat
40975998LOC120096832small nucleolar RNA SNORA76141963029219630423Rat
1592356Amtnamelotin141964862419661181Rat
620983Oprpnopiorphin prepropeptide141970253519717550Rat
3953Smr3bsubmaxillary gland androgen regulated protein 3B141978381519788557Rat
41041616LOC120096859U4 spliceosomal RNA141985066119850849Rat
3954Vcsa2variable coding sequence A2141985123219857697Rat
11434380LOC108352824SMR1 protein-like141990080819901906Rat
1563299Smr3asubmaxillary gland androgen regulated protein 3A142005377920059568Rat
1597129LOC364127similar to peptidylprolyl isomerase D142009065620093812Rat
620592Cabs1calcium binding protein, spermatid associated 1142009696220099024Rat
41256287LOC120096584uncharacterized LOC120096584142013075920172275Rat
61990Csn3casein kappa142015403220160585Rat
1359468Fdcspfollicular dendritic cell secreted protein142016969120173983Rat
1561883Odamodontogenic, ameloblast associated142019328620202517Rat
11446409LOC108352727uncharacterized LOC108352727142019566120214723Rat
1309071Dzip1-ps1DAZ interacting protein 1, pseudogene 1142022723420229292Rat
1310384Prr27proline rich 27142023275720248617Rat
628794Csn1s2bcasein alpha s2-like B142025025720266377Rat
621152Csn1s2acasein alpha s2-like A142028116720295232Rat
1589974Stathstatherin142030732420311182Rat
61981Csn2casein beta142032258120329818Rat
2430Csn1s1casein alpha s1142034362020359614Rat
1562394RGD1562394similar to ribosomal protein L30142038186220382205Rat
11380862LOC108352728uncharacterized LOC108352728142039739320404391Rat
41273802LOC120096585uncharacterized LOC120096585142040441720406946Rat
3776Sult1e1sulfotransferase family 1E member 1142042232420439562Rat
620491Sult1d1sulfotransferase family 1D, member 1142044113520476341Rat
708534Sult1b1sulfotransferase family 1B member 1142049276320505491Rat
69432Ugt2a1UDP glucuronosyltransferase family 2 member A1142052101820545060Rat
1308444Ugt2a3UDP glucuronosyltransferase family 2 member A3142057282520590295Rat
41221305LOC120096588uncharacterized LOC120096588142059933820650775Rat
41043845LOC120096586kelch repeat and BTB domain-containing protein 8-like142061325720620826Rat
3936Ugt2bUDP glycosyltransferase 2 family, polypeptide B142063057220665062Rat
41382898LOC120096589uncharacterized LOC120096589142066552120675111Rat
41360123LOC120096590uncharacterized LOC120096590142067519020682835Rat
1595834LOC364228similar to T-cell activation kelch repeat protein142068833320695396Rat
2321603LOC100364155hypothetical LOC100364155142071753520739142Rat
41155403LOC120096587UDP-glucuronosyltransferase 2B17-like142074059920745728Rat
628623Ugt2b15UDP glucuronosyltransferase family 2 member B15142076801520783599Rat
41189227LOC120096526UDP-glucuronosyltransferase 2B17-like142080250220807337Rat
3937Ugt2b37UDP-glucuronosyltransferase 2 family, member 37142081728520833917Rat
620895Ugt2b35UDP glucuronosyltransferase 2 family, polypeptide B35142085344120891039Rat
708417Ugt2b7UDP glucuronosyltransferase family 2 member B7142089668220919604Rat
1588690LOC689798similar to UDP-glucuronosyltransferase142094444920955564Rat
6496885LOC100910703heterogeneous nuclear ribonucleoprotein A3-like142096235220965420Rat
2321083Ppial4dpeptidylprolyl isomerase A (cyclophilin A)-like 4D142100652221007284Rat
708541Ugt2b17UDP glucuronosyltransferase family 2 member B17142102403521035784Rat
9195730LOC103690383UDP-glucuronosyltransferase 2B4-like142103826621042369Rat
1565664RGD1565664similar to UDP-glucuronosyltransferase 2B1 precursor, microsomal (UDPGTR-2)142105672621082314Rat
1587539LOC689841similar to Rho GTPase activating protein 11A142108834521089685Rat
1587531LOC689849similar to heat shock protein 1, alpha142110398421106561Rat
1309989Ugt2b10UDP glucuronosyltransferase 2 family, polypeptide B10142110802221127202Rat
1559459RGD1559459similar to Expressed sequence AI788959142114614021167706Rat
621706Ythdc1YTH domain containing 1142118543821215934Rat
11432687LOC108352729uncharacterized LOC108352729142121603021241866Rat
1561698Tmprss11etransmembrane serine protease 11E142129612721328203Rat
1587481LOC689899similar to 60S ribosomal protein L23a142137904621379585Rat
1303278Tmprss11btransmembrane serine protease 11B142138592421405894Rat
40949944LOC120096866U6 spliceosomal RNA142139165121391757Rat
2321178LOC100364381hypothetical LOC100364381142146267421463166Rat
1560675Tmprss11ftransmembrane serine protease 11F142149289621534792Rat
1306446Tmprss11gtransmembrane protease, serine 11G142154608721587258Rat
1596322Tmprss11atransmembrane serine protease 11A142162488121665284Rat
41182668LOC120096852U2 spliceosomal RNA142163718321637302Rat
620654Tmprss11dtransmembrane serine protease 11D142170733621769398Rat
1302967Tmprss11ctransmembrane protease, serine 11C142178212421837793Rat
9399075LOC103692776uncharacterized LOC103692776142180985621825718Rat
70513Gnrhrgonadotropin releasing hormone receptor142185687121874861Rat
1308324Uba6ubiquitin-like modifier activating enzyme 6142188403921947857Rat
1311584Stap1signal transducing adaptor family member 1142195046621981395Rat
41395196LOC120096806U1 spliceosomal RNA142197358221973761Rat
1303061Cenpccentromere protein C142198806722046732Rat
11497443LOC108352848actin, alpha skeletal muscle-like142211410422114971Rat
41057074LOC120096753U1 spliceosomal RNA142224747522247636Rat
41134169LOC120096591uncharacterized LOC120096591142226463822347467Rat
2318302LOC100362385sperm motility kinase-like142267773222682199Rat
41322366LOC120096527uncharacterized LOC120096527142300644523041321Rat
1585182LOC690029similar to Phosphoglycerate kinase 1142321415023215412Rat
2324510LOC100362544dihydrouridine synthase 4-like142327997423280735Rat
2324321LOC100362637myelin-associated oligodendrocytic basic protein-like142350234823502821Rat
41296642LOC120096828U1 spliceosomal RNA142357271223572874Rat
1565048RGD1565048similar to 60S ribosomal protein L9142364807023648731Rat
620831Epha5EPH receptor A5142365339324020135Rat
40988626LOC120096592uncharacterized LOC120096592142430608824337634Rat
41119499LOC120096819small nucleolar RNA SNORA17142437744624377574Rat
40986009LOC120096830small nucleolar RNA SNORA17142445330224453395Rat
1304608Tecrltrans-2,3-enoyl-CoA reductase-like142473224124805272Rat
41363359LOC120096750U6 spliceosomal RNA142532491125325017Rat
11503027LOC108352825protein transport protein Sec61 subunit gamma pseudogene142556696925655719Rat
7623930LOC102549397zinc finger protein 120-like142569958225701112Rat
2324284LOC100362674phytoceramidase, alkaline-like142572905125729730Rat
7513863LOC102546751uncharacterized LOC102546751142601753826019528Rat
41325492LOC120096723ferritin light chain 1-like142605035526050863Rat
11438225LOC108352732uncharacterized LOC108352732142621490926225971Rat
620836Adgrl3adhesion G protein-coupled receptor L3142633632027104060Rat
11405419LOC108352841uncharacterized LOC108352841142647842326487525Rat
11456987LOC108352849small nuclear ribonucleoprotein G pseudogene142763159327632651Rat
40950797LOC120096528uncharacterized LOC120096528142765058027663108Rat
41154061LOC120096593uncharacterized LOC120096593142792582727940488Rat
41062143LOC120096755U6 spliceosomal RNA142809365428093760Rat
41179800LOC120096787small nucleolar RNA SNORA13142831380228313928Rat
41038991LOC120096781small nucleolar RNA SNORD113/SNORD114 family142836562528365700Rat
41151227LOC120096857U4 spliceosomal RNA142925528129255363Rat
41398362LOC120096810small nucleolar RNA SNORA17142942757529427704Rat
1597019LOC501910similar to Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)142948016729483689Rat
41092069NEWGENE_40933693transfer RNA proline (anticodon GGG)142989397029894044Rat
1561589RGD1561589similar to RIKEN cDNA 5730434I03 gene143000513830006045Rat
11375302LOC108352734uncharacterized LOC108352734143039064930402623Rat
41091691LOC120096812small nucleolar RNA SNORA17143047591730476044Rat
7690127LOC102551339uncharacterized LOC102551339143049803330624872Rat
41074429LOC120096874U6 spliceosomal RNA143054888330548989Rat
1306201Igfbp7insulin-like growth factor binding protein 7143073741430797317Rat
41374531LOC120096730uncharacterized LOC120096730143075052230755635Rat
41280434LOC120096728ran guanine nucleotide release factor-like143075131230753398Rat
9201561LOC10369278560S ribosomal protein L39143075805130758421Rat
11438234Trnac-gca38transfer RNA cysteine (anticodon GCA) 38143075871030758781Rat
41094989LOC120096729uncharacterized LOC120096729143077506730780888Rat
1309477Polr2bRNA polymerase II subunit B143079722830834916Rat
1359460Noa1nitric oxide associated 1143083501230851296Rat
621069RestRE1-silencing transcription factor143085910930879828Rat
7498730LOC102551532uncharacterized LOC102551532143089262630894920Rat
41111789LOC120096875U6 spliceosomal RNA143096060030960706Rat
1302956Spink2serine peptidase inhibitor, Kazal type 2143096768230974326Rat
11432042LOC108352735uncharacterized LOC108352735143097803930982711Rat
41396352LOC120096731uncharacterized LOC120096731143098967430995959Rat
7684935LOC102551595uncharacterized LOC102551595143101355731025555Rat
621841HopxHOP homeobox143105591231082909Rat
40947943LOC120096732uncharacterized LOC120096732143105623431060971Rat
41219020LOC120096733uncharacterized LOC120096733143107643331077597Rat
1562571Thegltheg spermatid protein-like143111010431152487Rat
1303337Arl9ADP-ribosylation factor like GTPase 9143115758531166803Rat
41335138LOC120096735uncharacterized LOC120096735143116489631171639Rat
1564787Srp72signal recognition particle 72143116817531195717Rat
40961482LOC120096737uncharacterized LOC120096737143119032931195581Rat
620066Paicsphosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase143119908631232731Rat
620237Ppatphosphoribosyl pyrophosphate amidotransferase143121574131250144Rat
7632687LOC102552854uncharacterized LOC102552854143124780131255151Rat
1311135Aasdhaminoadipate-semialdehyde dehydrogenase143125501931281802Rat
1311575Cracdcapping protein inhibiting regulator of actin dynamics143128406631520103Rat
41313716LOC120096736uncharacterized LOC120096736143131369431338837Rat
40932403LOC12009673460S ribosomal protein L23a-like143143224731432742Rat
1310726Cep135centrosomal protein 135143153053831595718Rat
40943998LOC120096724uncharacterized LOC120096724143159528931623397Rat
1304939Exoc1exocyst complex component 1143161153631659920Rat
1591303Exoc1lexocyst complex component 1 like143167344231698605Rat
7520032LOC102556008uncharacterized LOC102556008143175176431829013Rat
68388Nmuneuromedin U143184456431872196Rat
1559712Pdcl2phosducin-like 2143187456331895272Rat
41027913LOC120096594uncharacterized LOC120096594143188221031884883Rat
620271Clockclock circadian regulator143190854231992673Rat
11355448LOC108352740uncharacterized LOC108352740143195842231975843Rat
1306983Tmem165transmembrane protein 165143199348932018717Rat
1308828Srd5a3steroid 5 alpha-reductase 3143204641532060796Rat
2965Kdrkinase insert domain receptor143221787132261018Rat
41345606LOC120096529uncharacterized LOC120096529143235515232357606Rat
620568KitKIT proto-oncogene receptor tyrosine kinase143254745932624694Rat
1598162LOC679908similar to CG1249-PA143263628032636653Rat
41110000LOC120096756U6 spliceosomal RNA143263823932638343Rat
41234281LOC120096530uncharacterized LOC120096530143274985732751927Rat
41059665LOC120096531NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like143294983932950212Rat
3284Pdgfraplatelet derived growth factor receptor alpha143300583833054347Rat
1308047Gsx2GS homeobox 2143312379933126151Rat
7501116LOC102556465histone-binding protein RBBP4-like143315264933153949Rat
1309278Chic2cysteine-rich hydrophobic domain 2143315766933192015Rat
41344346LOC120096595uncharacterized LOC120096595143327727833278438Rat
1308159Lnx1ligand of numb-protein X 1143351442933617086Rat
1309336Fip1l1factor interacting with PAPOLA and CPSF1143361521033675742Rat
1562708Scfd2sec1 family domain containing 2143368334834008232Rat
41230065LOC120096744U6 spliceosomal RNA143394732233947428Rat
1303099Rasl11bRAS-like family 11 member B143401492434019146Rat
40997259LOC120096596uncharacterized LOC120096596143402127934025049Rat
7540659LOC102554412uncharacterized LOC102554412143404969034058012Rat
6489076Dancrdifferentiation antagonizing non-protein coding RNA143412695634127936Rat
41244228LOC120096831small nucleolar RNA SNORA26143412764034127760Rat
1564808Usp46ubiquitin specific peptidase 46143415005534219227Rat
7564466LOC102554514uncharacterized LOC102554514143416173934171159Rat
1597128LOC364143similar to WW domain binding protein 11143429733934299886Rat
2322951LOC100363494ubiquitin B-like143431294934313236Rat
11362928LOC108352851uncharacterized LOC108352851143433385834338439Rat
11387368LOC108352742uncharacterized LOC108352742143442022134447174Rat
735208Spata18spermatogenesis associated 18143453193134558671Rat
9438180LOC103692822uncharacterized LOC103692822143456039134563548Rat
1594202Sgcbsarcoglycan, beta143456361434578614Rat
1306094Lrrc66leucine rich repeat containing 66143458131834604534Rat
1310422Dcun1d4defective in cullin neddylation 1 domain containing 4143465272334733122Rat
1310958Cwh43cell wall biogenesis 43 C-terminal homolog143475427934800530Rat
2323837LOC100359456eukaryotic translation initiation factor 5-like143481029534812256Rat
41292566LOC120096532uncharacterized LOC120096532143484139934843213Rat
2319541Ociad2OCIA domain containing 2143487366834889276Rat
1359549Ociad1OCIA domain containing 1143489785134915291Rat
1311309FrylFRY like transcription coactivator143495662335189738Rat
727972Zar1zygote arrest 1143519344635197382Rat
1309536Slc10a4solute carrier family 10, member 4143519850935203729Rat
40990623NEWGENE_40973998transfer RNA histidin (anticodon AUG)143520503235205104Rat
1311593Slain2SLAIN motif family, member 2143523603435314186Rat
1592953Gpx4-ps3glutathione peroxidase 4, pseudogene 3143533811035338759Rat
620973Tectec protein tyrosine kinase143535255135461585Rat
41255002LOC120096597uncharacterized LOC120096597143540854835410632Rat
1306481TxkTXK tyrosine kinase143546336935519448Rat
1310092Nipal1NIPA-like domain containing 1143553764135561651Rat
621815Cnga1cyclic nucleotide gated channel subunit alpha 1143556694735605065Rat
1359201Nfxl1nuclear transcription factor, X-box binding-like 1143562608635667505Rat
727887Corincorin, serine peptidase143568060135910703Rat
1592952LOC680377similar to Acidic leucine-rich nuclear phosphoprotein 32 family member A (Leucine-rich acidic nuclear protein)143579579935798154Rat
7714547LOC102550273synaptonemal complex central element protein 2-like143580073535802489Rat
1588541Atp10dATPase phospholipid transporting 10D (putative)143591172836012549Rat
11508820LOC10835274340S ribosomal protein S2 pseudogene143593582335936668Rat
41029313LOC120096725myosin light polypeptide 6-like143602148036043186Rat
1305402Commd8COMM domain containing 8143604904036059617Rat
2649Gabrb1gamma-aminobutyric acid type A receptor subunit beta1143606872536548946Rat
40997548LOC120096598uncharacterized LOC120096598143612390036162244Rat
1333995Olr1604-psolfactory receptor pseudogene 1604143627382136274693Rat
621670Gabra4gamma-aminobutyric acid type A receptor subunit alpha 4143659078236667724Rat
2319120Cox7b2cytochrome c oxidase subunit 7B2143669309636805323Rat
41131698NEWGENE_40933816transfer RNA valine (anticodon AAC)143696361536963687Rat
41089551LOC120096599uncharacterized LOC120096599143709156937096980Rat
61856Gabra2gamma-aminobutyric acid type A receptor subunit alpha 2143709699537230030Rat
621732Gabrg1gamma-aminobutyric acid type A receptor subunit gamma 1143739621737469606Rat
41070370LOC120096752U6 spliceosomal RNA143764334437643450Rat
40995005LOC120096743U6 spliceosomal RNA143769257737692683Rat
41386864LOC120096772U7 small nuclear RNA143795682137956881Rat
40926311LOC120096533uncharacterized LOC120096533143804510538050006Rat
41347535LOC120096823small nucleolar RNA SNORA17143847900538479130Rat
41044971LOC120096534uncharacterized LOC120096534143848770738491128Rat
1305521Gnpda2glucosamine-6-phosphate deaminase 2143852066338538713Rat
1310774Guf1GTP binding elongation factor GUF1143853795338557331Rat
1310766Yipf7Yip1 domain family, member 7143857104538599070Rat
41216070LOC120096807small nucleolar RNA SNORA17143861569838615827Rat
1312020Kctd8potassium channel tetramerization domain containing 8143877327439018182Rat
41176151LOC12009670260S ribosomal protein L7-like143878280338783597Rat
1594181Hspd1-ps4heat shock protein 1, pseudogene 4143897226638974496Rat
1561787RGD1561787similar to Ab2-076143915989139161654Rat
41328132LOC120096600uncharacterized LOC120096600143943346339437629Rat
41073061LOC120096811small nucleolar RNA SNORA17143961071539610842Rat
1565933LOC360933similar to Ac1591143973808439791430Rat
41144709LOC120096601uncharacterized LOC120096601143974936039763419Rat
9198670LOC103692836uncharacterized LOC103692836143976352839775762Rat
41299431LOC120096796small nucleolar RNA SNORA48143980705839807196Rat
1586204Hspd1-ps2heat shock protein 1, pseudogene 2143995257739954795Rat
1564635Grxcr1glutaredoxin and cysteine rich domain containing 1144000416940126571Rat
41243425LOC120096602uncharacterized LOC120096602144023267440243612Rat
1309619Atp8a1ATPase phospholipid transporting 8A1144031501340557572Rat
7504244LOC102547308uncharacterized LOC102547308144034595840348826Rat
41279334LOC120096603uncharacterized LOC120096603144035952540364571Rat
1565710Shisa3shisa family member 3144056367240568244Rat
41086856LOC120096535uncharacterized LOC120096535144060294640608991Rat
7621128LOC102547499uncharacterized LOC102547499144061905740622769Rat
11378147LOC108352744glyceraldehyde-3-phosphate dehydrogenase pseudogene144063372140634794Rat
41339146LOC120096604uncharacterized LOC120096604144070047440717094Rat
11440419LOC108352745uncharacterized LOC108352745144071725840752979Rat
1584735Bend4BEN domain containing 4144075304840788686Rat
11512407LOC108352852glyceraldehyde-3-phosphate dehydrogenase pseudogene144080916940810344Rat
1593180Slc30a9solute carrier family 30 member 9144081628440870992Rat
708371Tmem33transmembrane protein 33144088848540910715Rat
1560582Phox2bpaired-like homeobox 2b144106601241069202Rat
1305269Limch1LIM and calponin homology domains 1144111257941425185Rat
41251030LOC120096605uncharacterized LOC120096605144125597041257155Rat
41396064LOC120096849U2 spliceosomal RNA144130747441307627Rat
3928Uchl1ubiquitin C-terminal hydrolase L1144148503341495590Rat
40944653LOC120096871U6 spliceosomal RNA144149731241497418Rat
1562438Apbb2amyloid beta precursor protein binding family B member 2144155791841878622Rat
1310137Nsun7NOP2/Sun RNA methyltransferase family member 7144187750041935238Rat
41300422LOC120096757U6 spliceosomal RNA144204096842041072Rat
1563570RGD1563570similar to ribosomal protein S23144204574942046255Rat
41135427LOC120096606uncharacterized LOC120096606144204813142054952Rat
1359713Rbm47RNA binding motif protein 47144205329042191572Rat
621534Chrna9cholinergic receptor nicotinic alpha 9 subunit144223521842241939Rat
1598004LOC681268similar to RIKEN cDNA 2410004L22144232338442323749Rat
1307623Rhohras homolog family member H144234113542371971Rat
1565738N4bp2NEDD4 binding protein 2144234269042479861Rat
1307094Pds5aPDS5 cohesin associated factor A144255165342651074Rat
41034751LOC120096749U6 spliceosomal RNA144259026142590365Rat
1590581LOC680579similar to ribosomal protein L14144259403942594681Rat
1311626Ube2kubiquitin-conjugating enzyme E2K144265801642718899Rat
2324107LOC100362751ribosomal protein P2-like144274528042745734Rat
1311122Smim14small integral membrane protein 14144278336142829762Rat
621879UgdhUDP-glucose 6-dehydrogenase144284870442872351Rat
1307270Liaslipoic acid synthetase144287669942893824Rat
62049Rpl9ribosomal protein L9144289394542897140Rat
1308227Klbklotho beta144289905042950788Rat
2322187LOC100363869ribosomal protein L32-like144294633342946852Rat
11373177LOC10835282840S ribosomal protein S13 pseudogene144295228842952858Rat
620619Rfc1replication factor C subunit 1144296627943041372Rat
41233454LOC120096833small nucleolar RNA SNORA77144299189242992020Rat
1306997Wdr19WD repeat domain 19144304247443106337Rat
1584389LOC684970similar to Heterogeneous nuclear ribonucleoprotein A1 (Helix-destabilizing protein) (Single-strand RNA-binding protein) (hnRNP core protein A1) (HDP)144312916643130555Rat
6496349LOC100910864mitochondrial carrier triple repeat protein 1-like144314091043144124Rat
1309661Klhl5kelch-like family member 5144314425443206192Rat
7561511LOC102556650uncharacterized LOC102556650144318871143202471Rat
1562424Tmem156transmembrane protein 156144322146443252453Rat
1560201Fam114a1family with sequence similarity 114, member A1144327569343346227Rat
11439749LOC108352749uncharacterized LOC108352749144330262343323885Rat
1303030Tlr6toll-like receptor 6144336216443374500Rat
1309975Tlr1toll-like receptor 1144338412743396765Rat
1311569Tlr10toll-like receptor 10144340084343414056Rat
1593290Klf3Kruppel like factor 3144347476743505801Rat
41321355LOC120096746U6 spliceosomal RNA144354501143545117Rat
9104957LOC103692863uncharacterized LOC103692863144365875243660819Rat
4888551Mir328bmicroRNA 328b144366306843663185Rat
1566409RGD1566409similar to 60S ribosomal protein L29 (P23)144370741243707862Rat
7668188LOC102552762uncharacterized LOC102552762144372910643734358Rat
41159606LOC120096607uncharacterized LOC120096607144385977043878152Rat
1304562Tbc1d1TBC1 domain family member 1144393682044135133Rat
41099168LOC120096610uncharacterized LOC120096610144396978643970591Rat
41319905LOC120096609uncharacterized LOC120096609144406034644065175Rat
41166496LOC120096608uncharacterized LOC120096608144406715344069117Rat
41378422LOC120096822small nucleolar RNA SNORA17144414919344149324Rat
1306061Pgm2phosphoglucomutase 2144416631444199823Rat
41128148LOC120096845U2 spliceosomal RNA144420861644208784Rat
41069626LOC120096800small nucleolar RNA SNORA17144427774844277879Rat
1597718LOC685165similar to serine/threonine/tyrosine interacting protein144428672744287397Rat
6492244LOC100911506uncharacterized LOC100911506144431539744318610Rat
1307468Rell1RELT-like 1144431864044378541Rat
1561612LOC498368similar to RIKEN cDNA 0610040J01144438738644478344Rat
1563065Nwd2NACHT and WD repeat domain containing 2144448004944671417Rat
1593179LOC498369similar to neighbor of Brca1 gene 1144479125344793245Rat
41096908LOC120096844U2 spliceosomal RNA144484790744848101Rat
11361894LOC108352853glyceraldehyde-3-phosphate dehydrogenase pseudogene144503481945035853Rat
1309563Slc25a52solute carrier family 25, member 52144539645445398337Rat
41191145LOC120096759U6 spliceosomal RNA144547900745479109Rat
1595096LOC685352similar to CG17293-PA144580766245808729Rat
1595055LOC685393similar to lin-9 homolog144587754745880236Rat
1596919LOC678765similar to CG17293-PA144620044246349977Rat
41003067LOC120096870U6 spliceosomal RNA144648489546485001Rat
1587839LOC685935similar to splicing factor, arginine/serine-rich 10 (transformer 2 homolog, Drosophila)144660261946605408Rat
2323176Dthd1death domain containing 1144667043846673183Rat
1306452Arap2ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2144671765746917326Rat
41185834LOC120096846U2 spliceosomal RNA144690207046902222Rat
41023908LOC120096816small nucleolar RNA SNORA17144698782146987951Rat
1595890LOC301861similar to ARP2 actin-related protein 2 homolog (yeast)144747096747472050Rat
41189851LOC120096611uncharacterized LOC120096611144791473147929659Rat
7641928LOC102548364uncharacterized LOC102548364144871382948716195Rat
6486870LOC100912410ribosome biogenesis protein NSA2 homolog144875970148769350Rat
11443889LOC108348204high mobility group protein B3 pseudogene144914941549150197Rat
41008038LOC120096826small nucleolar RNA SNORA17144940536949405490Rat
1587622LOC688557similar to 60S ribosomal protein L7144941213449412891Rat
41165825LOC120096754U6 spliceosomal RNA144968495449685056Rat
41118704LOC120096872U6 spliceosomal RNA145033007150330177Rat
11478268LOC108352854dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4-like145045859650458890Rat
1566292RGD1566292similar to Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9145050730250507808Rat
1586202LOC289647similar to Sumo1/sentrin/Smt3 specific protease 17145080444650806452Rat
41266703LOC120096514endogenous retrovirus group K member 6 Gag polyprotein-like145087663650916929Rat
1589992Cox7a2l2cytochrome c oxidase subunit VIIa polypeptide 2-like 2145130116951301612Rat
1563725RGD1563725similar to C1GALT1-specific chaperone 1145145932551460537Rat
41239410LOC120096612uncharacterized LOC120096612145156829551570088Rat
41051904LOC120096536uncharacterized LOC120096536145158754151598334Rat
2316380Vom1r-ps103vomeronasal 1 receptor pseudogene 103145166190851662607Rat
1588879LOC688409similar to microfibrillar-associated protein 1145184823651849369Rat
1303209Pcdh7protocadherin 7145247180152901696Rat
40926625LOC12009661360S ribosomal protein L9-like145270794852712379Rat
7645018LOC102549643uncharacterized LOC102549643145292914352930478Rat
7678464LOC102549744uncharacterized LOC102549744145293083552933116Rat
41392624LOC120096515dnaJ homolog subfamily A member 3, mitochondrial-like145324997353358181Rat
41209678LOC120096829small nucleolar RNA SNORA17145358107953581212Rat
1587649LOC688530similar to esterase D/formylglutathione hydrolase145360483253605978Rat
41212442LOC120096827small nucleolar RNA SNORA17145404088054040999Rat
41096139LOC120096848U2 spliceosomal RNA145448406554484191Rat
41362307LOC120096855U4 spliceosomal RNA145463594154636079Rat
41216713LOC120096851U2 spliceosomal RNA145472054654720639Rat
1586201LOC289651Dnmt3a-ps3 pseudogene145476836554770941Rat
2325120LOC100359605hypothetical LOC100359605145484626454854869Rat
41257153LOC120096516COP9 signalosome complex subunit 8-like145576474855765405Rat
41359523LOC12009651740S ribosomal protein S2-like145593262755934118Rat
40999201LOC120096738U6 spliceosomal RNA145629855156298654Rat
1562755RGD1562755similar to 60S ribosomal protein L23a145656623856572088Rat
41217372LOC120096537cofilin-1-like145674964356750117Rat
1304641Stim2stromal interaction molecule 2145687842857004405Rat
41116190LOC120096843U2 spliceosomal RNA145695727456957478Rat
1304958Tbc1d19TBC1 domain family, member 19145708430557200221Rat
40957555LOC120096614uncharacterized LOC120096614145724686657262591Rat
2289Cckarcholecystokinin A receptor145729239757300747Rat
7543920LOC102552214uncharacterized LOC102552214145732206057326658Rat
1593096Rbpjrecombination signal binding protein for immunoglobulin kappa J region145733849357523330Rat
2320504LOC10036125960S ribosomal protein L13-like145763235857633066Rat
1565192Smim20small integral membrane protein 20145771130457722681Rat
1562860Sel1l3SEL1L family member 3145777551557882076Rat
620889Slc34a2solute carrier family 34 member 2145791093157930236Rat
41233465LOC120096615uncharacterized LOC120096615145793043557947798Rat
11459947LOC108352756uncharacterized LOC108352756145800334958013825Rat
2320358LOC100361307hypothetical LOC100361307145807814558079340Rat
1306572Anapc4anaphase promoting complex subunit 4145812599558159253Rat
1311414Zcchc4zinc finger CCHC-type containing 4145816545958207071Rat
1359515Pi4k2bphosphatidylinositol 4-kinase type 2 beta145822179058248716Rat
1589491SepsecsSep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase145831148458341745Rat
7627395LOC102552822uncharacterized LOC102552822145834457958368002Rat
1310391Lgi2leucine-rich repeat LGI family, member 2145841596558443450Rat
9279922LOC10369304540S ribosomal protein SA pseudogene145846651958467175Rat
1582968Ccdc149coiled-coil domain containing 149145850958358605017Rat
3733Sod3superoxide dismutase 3145861010458615845Rat
40926627LOC120096780small nucleolar RNA SNORA70145863795558638086Rat
11368675LOC108352757uncharacterized LOC108352757145876965958787020Rat
1308072Dhx15DEAH-box helicase 15145878714758825083Rat
620925Ppargc1aPPARG coactivator 1 alpha145886075259516525Rat
40938133LOC12009650260S ribosomal protein L36-like145887752058916595Rat
1596185LOC689119similar to high mobility group nucleosomal binding domain 1146003031060030603Rat
41126556LOC120096850U2 spliceosomal RNA146032993260330000Rat
41338044LOC120096616uncharacterized LOC120096616146041493160427292Rat
2322459LOC100360292hypothetical LOC100360292146054946060551655Rat
1309539Gba3glucosylceramidase beta 3146057536860662952Rat
41212480LOC120096518cytochrome c, somatic-like146071556760715921Rat
1304914Adgra3adhesion G protein-coupled receptor A3146087471960976341Rat
1597121LOC364170similar to Galectin-9 (36 kDa beta-galactoside-binding lectin) (Urate transporter/channel) (UAT)146110879861109838Rat
1565332RGD1565332similar to interferon induced transmembrane protein 3146123326961233688Rat
708539Kcnip4potassium voltage-gated channel interacting protein 4146138069962531399Rat
41210570LOC120096504uncharacterized LOC120096504146140677661426196Rat
41124397LOC120096503T-complex protein 1 subunit zeta-like146155191261553037Rat
7688150LOC102547995H/ACA ribonucleoprotein complex subunit 4-like146222866462230195Rat
1597120LOC364172similar to eukaryotic translation elongation factor 1 alpha 2146231418462315751Rat
1311045Pacrglparkin coregulated like146253201962556987Rat
69310Slit2slit guidance ligand 2146261633762955934Rat
2325375Mir218-1microRNA 218-1146270975962709868Rat
4888549Mir3565microRNA 3565146270975962709872Rat
1594761LOC689292similar to 40S ribosomal protein S3a (V-fos transformation effector protein)146309404163094488Rat
9114441LOC10369315940S ribosomal protein S6 pseudogene146311098463111679Rat
1593175LOC498384similar to aldehyde dehydrogenase family 9, subfamily A1146339676463403072Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10622D14Mgh3120141863134518631470Ratregion
10623D14Wox12194141864404318644232Ratregion
11030D14Mit4139144233688142337007Ratregion
33818D14Mit9249144187344441873686Ratregion
33989D14Mit13147144782261847822765Ratregion
34045D14Mit8137145276462552764770Ratregion
34102D14Mgh5150144187102241871196Ratregion
34214D14Mgh6145144165819041658327Ratregion
11482D14Wox13194141985881119859012Ratregion
11482D14Wox13194141984803919848270Ratregion
11483D14Wox17141985879219859003Ratregion
33692D14Mit12140143766971937669857Ratregion
33772D14Mit3100143333435333334448Ratregion
36287D14Rat12153143915358139153750Ratregion
35202D14Rat24125144246809742468199Ratregion
35319D14Rat16190144226252942262698Ratregion
35342D14Rat8132143032009230320216Ratregion
35465D14Rat13125143258323832583345Ratregion
36998D14Rat17161145491852854918692Ratregion
37044D14Rat86294144940781649408114Ratregion
37124D14Rat14200143115335031153547Ratregion
37136D14Rat105237143295352432953740Ratregion
37624D14Rat68246144104121141041453Ratregion
37638D14Rat46204144673111146731319Ratregion
37638D14Rat46204144579270845792904Ratregion
37798D14Rat48241144378408443784333Ratregion
36520D14Rat7168142283307822833252Ratregion
34890D14Rat9130142803506828035204Ratregion
34965D14Rat10176143088377730883947Ratregion
35713D14Rat11172143905723739057404Ratregion
35723D14Rat25168144079330740793460Ratregion
35723D14Rat25168144079326040793460Ratregion
35939D14Rat15144144127559041275734Ratregion
39598D14Rat81202142119949321199724Ratregion
39826D14Rat85229144518481245185033Ratregion
38232D14Rat56181144162500341625190Ratregion
38238D14Rat58160145798016657980332Ratregion
40392D14Rat107145145741041457410553Ratregion
40712D14Rat83228143107177431072011Ratregion
38408D14Rat65129143404961034049719Ratregion
38486D14Rat41140142658520526585343Ratregion
40104D14Rat99237142453123024531477Ratregion
38932D14Rat36145143076702530767156Ratregion
38984D14Rat31223144047624040476463Ratregion
39042D14Rat52135143482377234823917Ratregion
39064D14Rat35207144682196846822171Ratregion
39088D14Rat63104144180629041806385Ratregion
39138D14Rat50232142541088525411143Ratregion
39174D14Rat55219142565635625656577Ratregion
41990D14Arb16120142121750821217635Ratregion
41992D14Arb17190141864401218644233Ratregion
42002D14Arb6300142043920720439526Ratregion
43015D14Rat116146142766793827668085Ratregion
43016D14Rat117126143168038331680527Ratregion
43018D14Rat140149145970728059707409Ratregion
43019D14Rat120136144442838044428522Ratregion
43021D14Rat122204145812587258126077Ratregion
43023D14Rat124200146030219560302424Ratregion
40930D14Rat82211142820319428203397Ratregion
41018D14Rat84115143247312332473250Ratregion
41050D14Rat87230146235281562353037Ratregion
41790D14Rat106245143220763432207871Ratregion
41866D14Rat119106145676168356761795Ratregion
44552D9Wox21136145112941751129474Ratregion
45165D14Got29133142034430420344439Ratregion
45166D14Got33254142565639825656652Ratregion
45167D14Got32197142443885524439049Ratregion
45169D14Got38253142772958727729840Ratregion
45170D14Got36122142820683028206952Ratregion
45171D14Got37176142798495727985134Ratregion
45172D14Got39139143038862130388760Ratregion
45173D14Got89263143051866230518925Ratregion
45174D14Got43134143439149434391628Ratregion
45175D14Got41128143210261632102744Ratregion
45176D14Got40244143289876132899005Ratregion
45177D14Got42253143397854533978795Ratregion
45178D14Got51264144136664741366913Ratregion
45179D14Got53238144158883841589076Ratregion
45181D14Got50191144204302642043215Ratregion
45182D14Got52157143904498239045139Ratregion
45183D14Got54273143889819738898470Ratregion
45184D14Got55118143848665038486768Ratregion
45187D14Got35119142746395527464076Ratregion
60763D14Wox3191142137954621379735Ratregion
60765D14Wox5140143999825139998391Ratregion
60067D14Got48280144285499542855275Ratregion
60068D14Got49165144287387742874042Ratregion
60069D14Got57230143878170238781930Ratregion
60081D14Got86137144045373140453868Ratregion
625816D14Got56150143889818238898332Ratregion
625820D14Got90190143515928435159474Ratregion
60059D14Got2791141880112418801217Ratregion
60060D14Got28169141880108718801258Ratregion
60061D14Got30283141964900219649280Ratregion
60063D14Got44153143544203235442185Ratregion
60064D14Got45126143501109535011221Ratregion
60065D14Got46179144470466544704844Ratregion
60066D14Got47186144509540245095588Ratregion
738055D14Hmgc4247141984801919848266Ratregion
738057D14Hmgc5198142177574021775938Ratregion
738058D14Hmgc7216143626908236269300Ratregion
738061D14Hmgc6155142368557123685694Ratregion
738061D14Hmgc6155142368553923685855Ratregion
738061D14Hmgc6155142368553923685694Ratregion
738064D14Hmgc8225145979441959794646Ratregion
66561D14Mco1163144104891841049081Ratregion
66575D14Mco7338143755162137551970Ratregion
66577D14Mco8210142128638821286593Ratregion
66697D14Uia4227142250750422507731Ratregion
67231D14Arb18128142036015820360286Ratregion
1630243D14Got108184146151290161513087Ratregion
1630300D14Got101124143275666532756789Ratregion
1630530D14Wox31290142042160720421896Ratregion
1631182D14Got114177144790225647902433Ratregion
1631619D14Got137292146168656461686856Ratregion
1631781D14Got115137145676166256761799Ratregion
1632114D14Got155216145887366058873876Ratregion
1628668D14Wox20184143305582933056013Ratregion
1628802D14Got103234144262309142623324Ratregion
1629535D14Got107293145626888056269173Ratregion
1629535D14Got107293145626871656269173Ratregion
1629607D14Got112273145883682158837091Ratregion
1638764D14Got105266145357512253575388Ratregion
1640850D14Wox25145729387057293950Ratregion
1641546D14Got102197143482371234823909Ratregion
1632772D14Wox26206145729466457294870Ratregion
1632817D14Got151192145844019458440386Ratregion
1632967D14Got104138146214531662145449Ratregion
1640178D14Got110115145286275252862867Ratregion
1640416D14Got163140145737890857379048Ratregion
1634872D13Got146128144795447447954604Ratregion
1634903D14Got119193143552646435526657Ratregion
1634956D14Got156129146292150162921630Ratregion
1635397D14Wox19142043937820439524Ratregion
1636696D14Got109193145802477958024972Ratregion
1637111D4Got249258144920188849202146Ratregion
1637369D14Got113124144387783043877954Ratregion
1637473D14Got143141144762483847624979Ratregion
1632534D14Got116277146030220360302480Ratregion
1633817D14Wox24145729207957292360Ratregion
1633849D14Got111197145286265652862853Ratregion
1634349D13Got145209144883069248830901Ratregion
1634733D14Got153218144790196347902181Ratregion
7205986Ppia150142100663421006784Ratregion
5038634BB23255183141942923919429322Ratregion
5036007PMC84675P1646143086409030864736Ratregion
5038904RH127399220142294759422947813Ratregion
5038906RH127401196144248299842483194Ratregion
5036388Klf3181144347848843478669Ratregion
5039308RH127632209145130118851301397Ratregion
5039102RH127513215144274533942745554Ratregion
5037051RH36296127143287500032875127Ratregion
5035647RH45623178144137653141376709Ratregion
5033923RH140631203144240811042408313Ratregion
5033991RH140949206144264899542649201Ratregion
5034153RH141568200143124966031249860Ratregion
5028793RH142349150143519009635190246Ratregion
5028827RH142480272144031918240319454Ratregion
5028827RH142480272144031918240319454Ratregion
5028867RH142631195143455675434556950Ratregion
5031610AU047746227143923176539231992Ratregion
5034207RH141772218144347809843478316Ratregion
5026570RH132719197144438445044384647Ratregion
5029135RH143653205144053365640533861Ratregion
5031866AU046891204144398801743988221Ratregion
5029311RH144316158143342901033429168Ratregion
5032119RH94451156143300612933006285Ratregion
5026810RH133620216143605920436059420Ratregion
5026864RH133820209143452947534529684Ratregion
5035130BE096355184141934132219341506Ratregion
5027028RH134455216144287194142872157Ratregion
5032369C87704114141951584719515961Ratregion
5027147WI-17713156142130128821301444Ratregion
5029789BE102626150145278765252787802Ratregion
5032567SHGC-6820792144111495941115051Ratregion
5027293AW557942109143489789934898008Ratregion
5027295C80280115141942893519429050Ratregion
5027297AW557551132141951594119516073Ratregion
5032815RH135403185143079371230793897Ratregion
5035294BM386109152145833673758336891Ratregion
5032909RH136935183142195577521955958Ratregion
5033017RH137289187143533843335338615Ratregion
5025000AU022345228143085095930851187Ratregion
5025002BB446153103142194468521944788Ratregion
5030321BE105744151142047497320475124Ratregion
5030493BF403317164144041005740410220Ratregion
5033279RH138249164143680509536805259Ratregion
5025326RH127888187143119920331199390Ratregion
5025436RH128308200144417833744178537Ratregion
502794338.MMHAP88FLE5.seq158142229442622294584Ratregion
5030657BI301681170144400092144001091Ratregion
5033467RH138942129142706719327067322Ratregion
5033487RH139013127143470433934704466Ratregion
5025594RH128923205145247326952473474Ratregion
5025648RH1291230145247500152475161Ratregion
5025774RH129612213143853845238538665Ratregion
5028253D4Mit35368142416042724160495Ratregion
5028261D5Mit306241143127548831275729Ratregion
5025908RH130164181144350477943504960Ratregion
5028444AI426615152144088589240886044Ratregion
5051390M86567121143722832137228442Ratregion
5051392AI118071132142083348420833616Ratregion
5053453RH142658100144349578243495882Ratregion
5053545RH142711123144279130942791432Ratregion
5055895RH144064138142637447926374617Ratregion
5056341RH144322172143666746336667635Ratregion
5051613AW21463191145548565255485731Ratregion
5054015RH142981172144048142640481597Ratregion
5056741RH144553152146167528561675437Ratregion
5054091RH143025115145860400758604122Ratregion
5054117RH143040134143607093836071072Ratregion
5054413RH143210162144347571143475873Ratregion
5057620BE095714152144056437640564528Ratregion
5057706BF386044153144087053740870690Ratregion
5055021RH143560143144284878142848924Ratregion
5055055RH143580112143421894734219059Ratregion
5058012BF386462187143430156234301749Ratregion
5055823RH144023264143540996635410230Ratregion
5058692BE102309169143416396234164131Ratregion
505218518.mHAa3b6.seq165145708020457080369Ratregion
5052273M84607174143300869233008866Ratregion
5052343X17459158145734210557342263Ratregion
5052442AI481521106144055638740556493Ratregion
5055297RH143720249145771144857711697Ratregion
5052601RH125883240144747011747470363Ratregion
5052779RH142269150144088584540885995Ratregion
5058916BF387243175143115763031157805Ratregion
5059036BF393957130143119704031197170Ratregion
5052863RH142317154142185529221855446Ratregion
5052943RH142364155144111465541114810Ratregion
5052961RH142374164143551629635516460Ratregion
5052965RH142376176143853829838538474Ratregion
5053023RH142409193145728682457287017Ratregion
5060004BF400256182145778858657788768Ratregion
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5086681BE115263160146166859961668759Ratregion
5085274AI176044198141930715719307352Ratregion
5083621BI276488217143198877431988991Ratregion
5503650UniSTS:465469545145734278857343333Ratregion
5504072px-63c9212143986842239868634Ratregion
5507632D5Buc331172143660493536606107Ratregion
5507634UniSTS:1426321417143377449733775914Ratregion
5504853ha25651283144385638443857667Ratregion
5504885ha3026130142314500623145136Ratregion
5505030Gpx40143533811235338614Ratregion
5505048Dnmt3a127145476956454769691Ratregion
5505118Cckar990145730056157301551Ratregion
5505835UniSTS:495883239142365344823653687Ratregion
5506047UniSTS:498239426143254805132548477Ratregion
5506332MARC_49176-49177:1118326844:1485145949569759496182Ratregion
5506869G46840210141906187019062080Ratregion
5506931G54151167143198999231990159Ratregion
5499889UniSTS:235209266141951580719516073Ratregion
5499507stSG6026120144183496141836169Ratregion
5499507stSG6026120144183490941836169Ratregion
5499527stSG609548100144431497744315817Ratregion
5499883UniSTS:235187232144278772142787953Ratregion
5499885UniSTS:235197252143591178135912033Ratregion
5499693Stim1347145687846256878809Ratregion
5499881UniSTS:235180233145687874956878982Ratregion
5503424AFMA286ZG11517144374112243742639Ratregion
5503544PPARGC1A__5755891145951564359516534Ratregion
5501169PMC151834P1403144223562742236030Ratregion
5501053PMC129753P2132145729339257293524Ratregion
5501508D14S2921064143197739531978459Ratregion
5501679UniSTS:265677293142100676521007058Ratregion
5501720UniSTS:266988152142400776024007912Ratregion
5501938MARC_17835-17836:1025010330:1490144106588241066372Ratregion
5502627RH125924233141876873218768964Ratregion
5502709DHX15175145882454258824717Ratregion
5502713PCDH7194145290007052900264Ratregion
5502847Arhgap11a0142108931021090044Ratregion
5502881Gabrb1693143608043536081128Ratregion
6484684D14Uwm13214142811832128118535Ratregion
6484686D14Uwm14262143161416631614428Ratregion
6480636D14Uwm1140143170701131707201Ratregion
6480638D14Uwm2220143367787733678087Ratregion
6480641D14Uwm3298143354871033549008Ratregion
6480643D14Uwm4240143247190232472125Ratregion
6484235D14Uwm5190143351459933514760Ratregion
6484237D14Uwm6389143355010433550483Ratregion
6484239D14Uwm7240143195765831957909Ratregion
6484241D14Uwm8300143237447032374766Ratregion
6484241D14Uwm8300143237430032374766Ratregion
6484243D14Uwm9210143275661332756819Ratregion
6484245D14Uwm10220143293431632934528Ratregion
6484247D14Uwm11190143309750833097688Ratregion
Position Markers

Peak: (D14Rat68)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21441,041,211 - 41,041,453 (+)MAPPER
Rnor_6.01442,689,266 - 42,689,507NCBI
Rnor_5.01442,485,726 - 42,485,967UniSTS
RGSC_v3.41443,650,129 - 43,650,371RGD
RGSC_v3.41443,650,130 - 43,650,371UniSTS
RGSC_v3.11443,652,520 - 43,652,762RGD
Celera1440,196,838 - 40,197,079UniSTS
RH 2.0 Map14526.1RGD
SHRSP x BN Map1428.2599RGD
FHH x ACI Map1439.47RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141757341219726296Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general does not map to any tameness region 2313383
qtl_general number of animals used:47 F1and 733 F2 rats (383 females) 2313383
qtl_general lineage: 4 unrelated tame and 4 aggressive rats were mated to get 11 F0 rats, these were mated reciprocally to get F1 rats that were backcrossed to F0 rats to get F2 animals 2313383