Pno1 (partner of NOB1 homolog) - Rat Genome Database

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Gene: Pno1 (partner of NOB1 homolog) Rattus norvegicus
Analyze
Symbol: Pno1
Name: partner of NOB1 homolog
RGD ID: 727882
Description: Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus and nucleoplasm. Predicted to be part of small-subunit processome. Predicted to be active in nucleus. Orthologous to human PNO1 (partner of NOB1 homolog); PARTICIPATES IN ribosome biogenesis pathway; INTERACTS WITH (+)-schisandrin B; 4,4'-sulfonyldiphenol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC289809; partner of Nob1; partner of NOB1 homolog (S. cerevisiae); putatative 28 kDa protein; RNA-binding protein PNO1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Pno1-ps1  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81495,811,335 - 95,819,903 (-)NCBIGRCr8
mRatBN7.21491,609,711 - 91,618,280 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1491,609,233 - 91,618,324 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1495,916,949 - 95,925,440 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01497,161,286 - 97,169,776 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01493,626,351 - 93,634,842 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014100,364,192 - 100,372,760 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14100,364,190 - 100,372,760 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014100,166,648 - 100,175,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41498,102,423 - 98,110,989 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11498,121,567 - 98,130,134 (-)NCBI
Celera1490,655,865 - 90,664,433 (-)NCBICelera
Cytogenetic Map14q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IEA,ISO,ISS)
nucleoplasm  (ISO)
nucleus  (IBA)
small-subunit processome  (ISO,ISS)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. NCBI rat LocusLink and RefSeq merged data October 15, 2003 NCBI rat LocusLink and RefSeq merged data October 15, 2003
4. GOA pipeline RGD automated data pipeline
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. CK1delta and CK1epsilon are components of human 40S subunit precursors required for cytoplasmic 40S maturation. Zemp I, etal., J Cell Sci. 2014 Mar 15;127(Pt 6):1242-53. doi: 10.1242/jcs.138719. Epub 2014 Jan 14.
Additional References at PubMed
PMID:8889548   PMID:12477932   PMID:15489334   PMID:15497447   PMID:22681889  


Genomics

Comparative Map Data
Pno1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81495,811,335 - 95,819,903 (-)NCBIGRCr8
mRatBN7.21491,609,711 - 91,618,280 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1491,609,233 - 91,618,324 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1495,916,949 - 95,925,440 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01497,161,286 - 97,169,776 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01493,626,351 - 93,634,842 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.014100,364,192 - 100,372,760 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl14100,364,190 - 100,372,760 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.014100,166,648 - 100,175,216 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41498,102,423 - 98,110,989 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11498,121,567 - 98,130,134 (-)NCBI
Celera1490,655,865 - 90,664,433 (-)NCBICelera
Cytogenetic Map14q22NCBI
PNO1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38268,157,888 - 68,176,238 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl268,157,888 - 68,176,238 (+)EnsemblGRCh38hg38GRCh38
GRCh37268,385,020 - 68,403,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36268,238,509 - 68,256,595 (+)NCBINCBI36Build 36hg18NCBI36
Celera268,234,624 - 68,252,699 (+)NCBICelera
Cytogenetic Map2p14NCBI
HuRef268,122,490 - 68,140,549 (+)NCBIHuRef
CHM1_1268,315,807 - 68,333,894 (+)NCBICHM1_1
T2T-CHM13v2.0268,168,438 - 68,186,793 (+)NCBIT2T-CHM13v2.0
Pno1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391117,153,198 - 17,161,589 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1117,153,198 - 17,161,568 (-)EnsemblGRCm39 Ensembl
GRCm381117,203,198 - 17,211,589 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1117,203,198 - 17,211,568 (-)EnsemblGRCm38mm10GRCm38
MGSCv371117,103,201 - 17,111,592 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361117,103,205 - 17,111,556 (-)NCBIMGSCv36mm8
Celera1117,576,862 - 17,586,116 (-)NCBICelera
Cytogenetic Map11A2NCBI
cM Map119.79NCBI
Pno1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542416,697,109 - 16,705,993 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542416,697,109 - 16,705,963 (-)NCBIChiLan1.0ChiLan1.0
PNO1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21258,232,032 - 58,246,847 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A58,236,264 - 58,250,795 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A68,209,911 - 68,224,772 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1 Ensembl2A69,334,447 - 69,347,707 (+)Ensemblpanpan1.1panPan2
PNO1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11067,231,087 - 67,241,800 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1067,231,101 - 67,241,441 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1067,122,166 - 67,132,859 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01068,250,301 - 68,260,998 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1068,250,289 - 68,260,894 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11067,934,891 - 67,945,572 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01068,232,471 - 68,243,164 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01068,528,209 - 68,538,938 (+)NCBIUU_Cfam_GSD_1.0
Pno1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629215,951,369 - 15,960,817 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649112,610,497 - 12,620,985 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649112,610,463 - 12,620,828 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PNO1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl374,068,828 - 74,084,789 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1374,071,621 - 74,084,896 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2377,603,531 - 77,616,769 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PNO1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11438,910,265 - 38,927,213 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1438,911,410 - 38,927,172 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604573,048,811 - 73,066,021 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pno1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247625,159,936 - 5,170,588 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247625,161,418 - 5,170,583 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:85
Count of miRNA genes:69
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000007824
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1459848686104848686Rat
1582236Gluco22Glucose level QTL 223.30.0164blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
631213Bw60Body weight QTL604.51retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)1484164970100078267Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1477914838104348525Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1433424686102238540Rat
1582259Gluco23Glucose level QTL 233.10.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)1474255551109089856Rat
1582197Gluco27Glucose level QTL 273.40.0006blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)147764007196755654Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1462398852107398852Rat
1582250Gluco26Glucose level QTL 263.30.0009blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1477640071100078267Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1460854936105854936Rat
1641900Alcrsp11Alcohol response QTL 11alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)1474255551109089856Rat
4889951Bss92Bone structure and strength QTL 923.9tibia area (VT:1000281)tibia-fibula cortical bone total cross-sectional area (CMO:0001721)1486271332100078267Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1411334716100078267Rat
1582255Gluco29Glucose level QTL 293.10.0025blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)147764007196755654Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1459848686104848686Rat
1582209Gluco20Glucose level QTL 203.80.0005blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)147764007196755654Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144261625899224555Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)146592028399224555Rat

Markers in Region
RH131608  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21491,610,280 - 91,610,478 (+)MAPPERmRatBN7.2
Rnor_6.014100,364,762 - 100,364,959NCBIRnor6.0
Rnor_5.014100,174,449 - 100,174,646UniSTSRnor5.0
RGSC_v3.41498,102,991 - 98,103,188UniSTSRGSC3.4
Celera1490,656,435 - 90,656,632UniSTS
RH 3.4 Map14691.4UniSTS
Cytogenetic Map14q22UniSTS
RH143175  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21491,609,282 - 91,609,424 (+)MAPPERmRatBN7.2
Rnor_6.014100,363,764 - 100,363,905NCBIRnor6.0
Rnor_5.014100,175,503 - 100,175,644UniSTSRnor5.0
RGSC_v3.41498,101,993 - 98,102,134UniSTSRGSC3.4
Celera1490,655,437 - 90,655,578UniSTS
RH 3.4 Map14691.0UniSTS
Cytogenetic Map14q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000007824   ⟹   ENSRNOP00000007824
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1491,609,233 - 91,618,324 (-)Ensembl
Rnor_6.0 Ensembl14100,364,190 - 100,372,760 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110369   ⟹   ENSRNOP00000088236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1491,609,233 - 91,618,262 (-)Ensembl
RefSeq Acc Id: NM_199083   ⟹   NP_954514
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81495,811,335 - 95,819,903 (-)NCBI
mRatBN7.21491,609,711 - 91,618,280 (-)NCBI
Rnor_6.014100,364,192 - 100,372,760 (-)NCBI
Rnor_5.014100,166,648 - 100,175,216 (+)NCBI
RGSC_v3.41498,102,423 - 98,110,989 (-)RGD
Celera1490,655,865 - 90,664,433 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_954514 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH88091 (Get FASTA)   NCBI Sequence Viewer  
  AAQ24834 (Get FASTA)   NCBI Sequence Viewer  
  EDL97908 (Get FASTA)   NCBI Sequence Viewer  
  EDL97909 (Get FASTA)   NCBI Sequence Viewer  
  EDL97910 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000007824.5
  ENSRNOP00000088236.1
GenBank Protein Q6VBQ8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_954514   ⟸   NM_199083
- UniProtKB: Q6VBQ8 (UniProtKB/Swiss-Prot),   A6JPZ1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000007824   ⟸   ENSRNOT00000007824
Ensembl Acc Id: ENSRNOP00000088236   ⟸   ENSRNOT00000110369
Protein Domains
K Homology   KH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6VBQ8-F1-model_v2 AlphaFold Q6VBQ8 1-248 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699503
Promoter ID:EPDNEW_R10026
Type:initiation region
Name:Pno1_1
Description:partner of NOB1 homolog
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.014100,372,736 - 100,372,796EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:727882 AgrOrtholog
BioCyc Gene G2FUF-14934 BioCyc
Ensembl Genes ENSRNOG00000005524 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000007824.7 UniProtKB/TrEMBL
  ENSRNOT00000110369.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1370.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7325613 IMAGE-MGC_LOAD
InterPro KH-I_PNO1_first UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_dom_type_1_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KH_PNO1_2nd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:289809 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:108528 IMAGE-MGC_LOAD
NCBI Gene 289809 ENTREZGENE
PANTHER PTHR12826:SF13 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RIBONUCLEASE Y UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam KH_PNO1_2nd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Pno1 PhenoGen
RatGTEx ENSRNOG00000005524 RatGTEx
SMART SM00322 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54791 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A9D6_RAT UniProtKB/TrEMBL
  A6JPZ1 ENTREZGENE, UniProtKB/TrEMBL
  PNO1_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  R9PXS8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-17 Pno1  partner of NOB1 homolog  Pno1  partner of NOB1 homolog (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Pno1  partner of NOB1 homolog (S. cerevisiae)  LOC289809  putatative 28 kDa protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-09-30 LOC289809        Symbol and Name status set to provisional 70820 PROVISIONAL