PNO1 (partner of NOB1 homolog) - Rat Genome Database

Name: PNO1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: PNO1 (partner of NOB1 homolog) Chlorocebus sabaeus

Analyze

Symbol:

PNO1

Name:

partner of NOB1 homolog

RGD ID:

18576291

Description:

ENCODES a protein that exhibits RNA binding (inferred); INVOLVED IN ribosomal small subunit biogenesis (ortholog); PARTICIPATES IN ribosome biogenesis pathway; FOUND IN nucleoplasm (ortholog); small-subunit processome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

RNA-binding protein PNO1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PNO1 (partner of NOB1 homolog)	NCBI	Ortholog
Mus musculus (house mouse):	Pno1 (partner of NOB1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Pno1 (partner of NOB1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pno1 (partner of NOB1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PNO1 (partner of NOB1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PNO1 (partner of NOB1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pno1 (partner of NOB1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PNO1 (partner of NOB1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pno1 (partner of NOB1 homolog)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	38,910,265 - 38,927,213 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	38,911,410 - 38,927,172 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	73,048,811 - 73,066,021 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ribosomal small subunit biogenesis (ISO)

Cellular Component

nucleolus (IEA)

nucleoplasm (ISO)

small-subunit processome (ISO)

Molecular Function

protein binding (ISO)

RNA binding (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

ribosome biogenesis pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

PNO1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	38,910,265 - 38,927,213 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	38,911,410 - 38,927,172 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	73,048,811 - 73,066,021 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

PNO1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	68,157,888 - 68,176,238 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	68,157,888 - 68,176,238 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	68,385,020 - 68,403,370 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	68,238,509 - 68,256,595 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	2	68,234,624 - 68,252,699 (+)	NCBI		Celera
Cytogenetic Map	2	p14	NCBI
HuRef	2	68,122,490 - 68,140,549 (+)	NCBI		HuRef
CHM1_1	2	68,315,807 - 68,333,894 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	2	68,168,438 - 68,186,793 (+)	NCBI		T2T-CHM13v2.0

Pno1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	17,153,198 - 17,161,589 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	17,153,198 - 17,161,568 (-)	Ensembl		GRCm39 Ensembl
GRCm38	11	17,203,198 - 17,211,589 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	17,203,198 - 17,211,568 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	17,103,201 - 17,111,592 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	17,103,205 - 17,111,556 (-)	NCBI		MGSCv36	mm8
Celera	11	17,576,862 - 17,586,116 (-)	NCBI		Celera
Cytogenetic Map	11	A2	NCBI
cM Map	11	9.79	NCBI

Pno1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	95,811,335 - 95,819,903 (-)	NCBI		GRCr8
mRatBN7.2	14	91,609,711 - 91,618,280 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	91,609,233 - 91,618,324 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	95,916,949 - 95,925,440 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	97,161,286 - 97,169,776 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	93,626,351 - 93,634,842 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	100,364,192 - 100,372,760 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	100,364,190 - 100,372,760 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	100,166,648 - 100,175,216 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	98,102,423 - 98,110,989 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	98,121,567 - 98,130,134 (-)	NCBI
Celera	14	90,655,865 - 90,664,433 (-)	NCBI		Celera
Cytogenetic Map	14	q22	NCBI

Pno1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	16,697,109 - 16,705,993 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	16,697,109 - 16,705,963 (-)	NCBI	ChiLan1.0	ChiLan1.0

PNO1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	58,232,032 - 58,246,847 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	58,236,264 - 58,250,795 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	68,209,911 - 68,224,772 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1 Ensembl	2A	69,334,447 - 69,347,707 (+)	Ensembl	panpan1.1		panPan2

PNO1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	67,231,087 - 67,241,800 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	67,231,101 - 67,241,441 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	67,122,166 - 67,132,859 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	68,250,301 - 68,260,998 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	68,250,289 - 68,260,894 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	67,934,891 - 67,945,572 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	68,232,471 - 68,243,164 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	68,528,209 - 68,538,938 (+)	NCBI		UU_Cfam_GSD_1.0

Pno1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	15,951,369 - 15,960,817 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	12,610,497 - 12,620,985 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	12,610,463 - 12,620,828 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PNO1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	74,068,828 - 74,084,789 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	74,071,621 - 74,084,896 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	77,603,531 - 77,616,769 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Pno1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	5,159,936 - 5,170,588 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624762	5,161,418 - 5,170,583 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	36	3	60
Low		17
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_007970412	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000012915 ⟹ ENSCSAP00000010934

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	14	38,911,410 - 38,927,172 (-)	Ensembl

RefSeq Acc Id:

XM_007970412 ⟹ XP_007968603

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	14	38,910,265 - 38,927,213 (-)	NCBI
Vero_WHO_p1.0	NW_023666045	73,048,811 - 73,066,021 (+)	NCBI

Sequence:

show sequence

AGGAAAGGGGCGGAGCTGCGGAGTTAGTTGGCGGAGGCTGGCTCCTGCGCGGTGCAAGAGCGCA
CGTGTTTCAGCCGGAAGCGCCTTAAGATTCCGGGAGATGGAATCCGAAATGGAAGCGCAGAGCG
CCGGAGCAGAGGAGGGCTTTACCCAGGTCACCCGTAAGGGTGGCCGGCGGGCGAAGAAACGACA
GGCTGAACAGCTGTCCGCAGCGGGAGAGGGCGGGGATGCGGGCCGGATGGACACAGAGGAGGCC
AGGCCGGCGAAGAGGCCCGTCTTCCCACCCCTCTGTGGGGACGGGCTCCTGAGTGGAAAAGAAG
AAACAAGGAAAATTCCAGTCCCAGCTAACAGATACACACCATTGAAAGAAAACTGGATGAAGAT
ATTTACTCCTATTGTGGAACATTTGGGACTTCAGATACGCTTTAACTTGAAATCAAGGAATGTA
GAAATCAGGACTTGTAAAGAAACCAAAGATGTTAGTGCTCTGACAAAAGCAGCTGATTTTGTGA
AAGCTTTTATTCTAGGCTTTCAGGTGGAGGATGCACTTGCCCTCATCAGGTTGGATGACCTCTT
CCTAGAGTCTTTTGAAATTACTGATGTTAAACCCCTAAAGGGAGACCATCTATCCAGGGCAATA
GGAAGAATCGCTGGCAAAGGAGGAAAAACCAAATTCACCATTGAGAATGTGACACGGACGCGGA
TAGTTTTGGCTGATGTGAAAGTTCACATCCTTGGCTCCTTCCAAAACATCAAGATGGCAAGAAC
TGCCATTTGCAACCTCATCTTGGGAAATCCTCCTTCCAAGGTTTATGGCAATATTCGAGCTGTG
GCTAGCAGATCAGCAGATCGATTCTGATTTCAAGTCAGAGACTTTTTATCTTGCCTTTGGACTC
TGGAGAAAAATACTTTATGAGGGGTCGGTCACAAGAAACCATCTGAAGAATTTCAGTCATTTGA
AGCCTCTGTCCCTTCTTCCATTCTCAGCCAGAAGCATAAACAGAAAAGGATTTAAGAGTATTCA
CACTCAACAGGTTTTAGAATAATTTAAATATCAAAAATTGATTCTATTATACTTACACATTAGG
TATAATTTATCATTTATCTGAAATTACATGTAGCAGATTACATAGTCTGTAATCCTCAGAGGGA
AACTTCTTTAAACAAGAAGTTAAAACAGCTCTATATGAATTTATACTTTTATATTTATAAATTT
ATAACCATAAAAATTTATAAACATTTCTTCTTTATAATTGTAATTTAATAGATTATCTCAGAAA
AACCTCTCTGAATGATAACCCTTCCTTACTACTGGGTGATGTGTAAATATTTGTTGGGGGACAG
GGTCTCACTTTGTCACCCAGGCTGGAGTGCAGTGGTGTAATCTCAGCTTACTGCAGCCTCTACT
TCCTGGGTTCAAGTGATCCTCCTGCCTCAGCCTCCCTAGTAGGTGGGACTACAGGTGTCCACCA
CCATGCTTGGCTAATATTTTGTATTTTTTGTAGAGATGGGATTTCACCACGTTGACCAGGCTGG
TCTCGAACTCCTGACCTCAAATGATCCATACACCTCGGCCTCCCAAAGTGCTGGGATTACAGGC
ATAAGCCACTGTGCCTGGCCTTGATGTGTGAATATTTGAGAGGTCATAAGCAGTGGTTTTGGCT
ATACTGCACTACACCGTATACATCAGTAAGAGCTCATCTTGGAACGTGTTTTGCAGTTTCAAAA
ATTAAAGACCTACATCACAGGGTTGATGTGAAGAAAGTTTTATTTTTCCAATGAGTATTTAATG
AAAGTATACATAACCATTGTTGGGTATACAGATGCTTCTCAACTTACGATGGGTTTATGTCCAG
ATAAGCCCATTGTGAGTTGAAAATACCAAACGTCGAACATCACAGCTTAGCCTACCTTAAAAGT
GCTCCGAACACTACATTAGGCTAGACTTGGGCAAAATTGTCTAATACAGAGCCTATTTTATAAT
AAAGTATGTTGAATGTCTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_007968603	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000010934
	ENSCSAP00000010934.1

RefSeq Acc Id:	XP_007968603 ⟸ XM_007970412
- UniProtKB:	A0A0D9RQP5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000010934 ⟸ ENSCSAT00000012915

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000014847	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000012915.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.1370.10	UniProtKB/TrEMBL
InterPro	KH_dom	UniProtKB/TrEMBL
	KH_dom_type_1_sf	UniProtKB/TrEMBL
KEGG Report	csab:103220128	UniProtKB/TrEMBL
NCBI Gene	PNO1	ENTREZGENE
PANTHER	PTHR12826:SF13	UniProtKB/TrEMBL
	RIBONUCLEASE Y	UniProtKB/TrEMBL
SMART	SM00322	UniProtKB/TrEMBL
Superfamily-SCOP	SSF54791	UniProtKB/TrEMBL
UniProt	A0A0D9RQP5	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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RGD Manual Annotations