Bst1 (bone marrow stromal cell antigen 1) - Rat Genome Database

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Gene: Bst1 (bone marrow stromal cell antigen 1) Rattus norvegicus
Analyze
Symbol: Bst1
Name: bone marrow stromal cell antigen 1
RGD ID: 620344
Description: Predicted to enable NAD+ nucleosidase activity and phosphorus-oxygen lyase activity. Predicted to be involved in several processes, including positive regulation of B cell proliferation; regulation of neutrophil chemotaxis; and regulation of peptidyl-tyrosine phosphorylation. Predicted to be located in uropod. Predicted to be active in plasma membrane. Orthologous to human BST1 (bone marrow stromal cell antigen 1); PARTICIPATES IN ADP-ribosylation pathway, cyclic ribosylation; niacin metabolic pathway; calcium/calcium-mediated signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 17beta-estradiol; 17beta-estradiol 3-benzoate.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ADP-ribosyl cyclase 2; ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2; bone marrow stromal antigen 1; BST-1; cADPr hydrolase 2; cyclic ADP-ribose hydrolase 2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,466,179 - 71,482,671 (-)NCBIGRCr8
mRatBN7.21467,253,706 - 67,270,203 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,252,998 - 67,270,180 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1471,660,168 - 71,676,664 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01472,933,823 - 72,950,292 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01469,370,611 - 69,387,107 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01471,798,218 - 71,814,540 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,798,651 - 71,814,523 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01471,827,040 - 71,843,340 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,404,263 - 72,414,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11472,406,653 - 72,415,960 (-)NCBI
Celera1466,211,250 - 66,227,689 (-)NCBICelera
Cytogenetic Map14q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP,ISO)
17beta-estradiol  (EXP)
17beta-estradiol 3-benzoate  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
artesunate  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[b]fluoranthene  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
deoxynivalenol  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diazinon  (EXP)
dichloroacetic acid  (ISO)
ethanol  (EXP)
ethylparaben  (ISO)
fulvestrant  (ISO)
furan  (EXP)
gentamycin  (EXP)
indometacin  (ISO)
Licochalcone B  (ISO)
methimazole  (EXP)
methylmercury chloride  (ISO)
ozone  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
perfluorohexanesulfonic acid  (ISO)
phorbol 13-acetate 12-myristate  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
silicon dioxide  (EXP,ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sulfadimethoxine  (EXP)
sulforaphane  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tremolite asbestos  (ISO)
troglitazone  (ISO)
vancomycin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
plasma membrane  (IBA,IEA,ISO)
side of membrane  (IEA)
uropod  (IEA,ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cloning of a cDNA encoding rat bone marrow stromal cell antigen 1 (BST-1) from the islets of Langerhans. Furuya Y, etal., Gene 1995 Nov 20;165(2):329-30.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. KEGG: Kyoto Encyclopedia of Genes and Genomes KEGG
4. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
5. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
8. RefSeq and LocusLink: NCBI gene-centered resources Pruitt KD and Maglott DR, Nucleic Acids Res. 2001 Jan 1;29(1):137-40.
9. CD38 and CD157: a long journey from activation markers to multifunctional molecules. Quarona V, etal., Cytometry B Clin Cytom. 2013 Jul-Aug;84(4):207-17. doi: 10.1002/cyto.b.21092. Epub 2013 Apr 10.
10. GOA pipeline RGD automated data pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:7805847   PMID:8202488   PMID:8941363   PMID:11866528   PMID:15328157   PMID:23376485   PMID:23533145  


Genomics

Comparative Map Data
Bst1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81471,466,179 - 71,482,671 (-)NCBIGRCr8
mRatBN7.21467,253,706 - 67,270,203 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1467,252,998 - 67,270,180 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1471,660,168 - 71,676,664 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01472,933,823 - 72,950,292 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01469,370,611 - 69,387,107 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01471,798,218 - 71,814,540 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1471,798,651 - 71,814,523 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01471,827,040 - 71,843,340 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41472,404,263 - 72,414,500 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11472,406,653 - 72,415,960 (-)NCBI
Celera1466,211,250 - 66,227,689 (-)NCBICelera
Cytogenetic Map14q21NCBI
BST1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38415,703,065 - 15,774,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl415,703,065 - 15,738,313 (+)EnsemblGRCh38hg38GRCh38
GRCh37415,704,688 - 15,734,410 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36415,313,739 - 15,342,893 (+)NCBINCBI36Build 36hg18NCBI36
Build 34415,380,909 - 15,410,064NCBI
Celera416,169,208 - 16,198,432 (+)NCBICelera
Cytogenetic Map4p15.32NCBI
HuRef415,055,184 - 15,084,416 (+)NCBIHuRef
CHM1_1415,702,580 - 15,731,822 (+)NCBICHM1_1
T2T-CHM13v2.0415,684,021 - 15,756,330 (+)NCBIT2T-CHM13v2.0
Bst1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39543,976,235 - 44,000,810 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl543,976,227 - 44,001,328 (+)EnsemblGRCm39 Ensembl
GRCm38543,818,880 - 43,843,468 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl543,818,885 - 43,843,986 (+)EnsemblGRCm38mm10GRCm38
MGSCv37544,210,132 - 44,234,707 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36544,107,156 - 44,131,559 (+)NCBIMGSCv36mm8
Celera541,248,346 - 41,272,891 (+)NCBICelera
Cytogenetic Map5B3NCBI
cM Map523.84NCBI
Bst1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554808,271,165 - 8,304,548 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554808,273,887 - 8,304,127 (-)NCBIChiLan1.0ChiLan1.0
BST1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2315,993,318 - 16,024,774 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1416,191,207 - 16,222,657 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0410,154,453 - 10,183,448 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1415,451,958 - 15,480,195 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl415,451,958 - 15,480,195 (+)Ensemblpanpan1.1panPan2
BST1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1364,617,903 - 64,641,131 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,646,051 - 64,648,027 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl364,618,740 - 64,641,038 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha367,135,282 - 67,173,336 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0365,095,732 - 65,133,917 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl365,096,294 - 65,133,784 (-)EnsemblROS_Cfam_1.0 Ensembl
ROS_Cfam_1.0 Ensembl365,096,301 - 65,118,989 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1364,584,797 - 64,622,840 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0364,788,847 - 64,827,043 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0365,149,007 - 65,187,195 (-)NCBIUU_Cfam_GSD_1.0
Bst1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528558,493,631 - 58,516,705 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647712,195,309 - 12,218,294 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647712,195,323 - 12,218,261 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BST1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl811,011,241 - 11,047,541 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1811,011,131 - 11,043,622 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2810,659,367 - 10,691,619 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BST1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12734,493,150 - 34,524,946 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2734,490,640 - 34,525,196 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604781,229,617 - 81,261,382 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Bst1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475516,134,640 - 16,150,816 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475516,123,705 - 16,161,814 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Bst1
38 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:41
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000004094
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 8 19 11
Low 1 43 41 33 33 8 11 33 35 33 8
Below cutoff 8 8 8 41 7

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000004094   ⟹   ENSRNOP00000004094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1467,253,711 - 67,270,180 (-)Ensembl
Rnor_6.0 Ensembl1471,798,651 - 71,814,523 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097924   ⟹   ENSRNOP00000089976
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1467,252,998 - 67,270,180 (-)Ensembl
RefSeq Acc Id: NM_030848   ⟹   NP_110475
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,466,180 - 71,482,647 (-)NCBI
mRatBN7.21467,253,711 - 67,270,180 (-)NCBI
Rnor_6.01471,798,218 - 71,814,540 (-)NCBI
Rnor_5.01471,827,040 - 71,843,340 (-)NCBI
RGSC_v3.41472,404,263 - 72,414,500 (-)RGD
Celera1466,211,250 - 66,227,689 (-)RGD
Sequence:
RefSeq Acc Id: XM_039092481   ⟹   XP_038948409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,471,368 - 71,482,671 (-)NCBI
mRatBN7.21467,258,890 - 67,270,203 (-)NCBI
RefSeq Acc Id: XM_039092482   ⟹   XP_038948410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,466,179 - 71,482,666 (-)NCBI
mRatBN7.21467,253,706 - 67,270,198 (-)NCBI
RefSeq Acc Id: XM_039092483   ⟹   XP_038948411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,476,261 - 71,482,668 (-)NCBI
mRatBN7.21467,265,353 - 67,270,200 (-)NCBI
RefSeq Acc Id: XR_005493016
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,471,359 - 71,482,665 (-)NCBI
mRatBN7.21467,258,890 - 67,270,197 (-)NCBI
RefSeq Acc Id: XR_005493017
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81471,471,605 - 71,482,665 (-)NCBI
mRatBN7.21467,259,136 - 67,270,197 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_110475   ⟸   NM_030848
- Peptide Label: precursor
- UniProtKB: Q63072 (UniProtKB/Swiss-Prot),   A6IJP1 (UniProtKB/TrEMBL),   F1LSX3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000004094   ⟸   ENSRNOT00000004094
RefSeq Acc Id: XP_038948410   ⟸   XM_039092482
- Peptide Label: isoform X2
- UniProtKB: F1LSX3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948409   ⟸   XM_039092481
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038948411   ⟸   XM_039092483
- Peptide Label: isoform X3
RefSeq Acc Id: ENSRNOP00000089976   ⟸   ENSRNOT00000097924

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q63072-F1-model_v2 AlphaFold Q63072 1-319 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699354
Promoter ID:EPDNEW_R9878
Type:multiple initiation site
Name:Bst1_1
Description:bone marrow stromal cell antigen 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01471,814,533 - 71,814,593EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620344 AgrOrtholog
BioCyc Gene G2FUF-15510 BioCyc
Ensembl Genes ENSRNOG00000003064 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSRNOG00055015149 UniProtKB/Swiss-Prot
  ENSRNOG00060019088 UniProtKB/Swiss-Prot
  ENSRNOG00065005577 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000004094 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000004094.7 UniProtKB/Swiss-Prot
  ENSRNOT00000097924.1 UniProtKB/TrEMBL
  ENSRNOT00055025938 UniProtKB/Swiss-Prot
  ENSRNOT00060033003 UniProtKB/Swiss-Prot
  ENSRNOT00065008270 UniProtKB/Swiss-Prot
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro ADP-ribosyl_cyclase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:81506 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 81506 ENTREZGENE
PANTHER ADP-RIBOSYL CYCLASE/CYCLIC ADP-RIBOSE HYDROLASE 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10912 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Rib_hydrolayse UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Bst1 PhenoGen
RatGTEx ENSRNOG00000003064 RatGTEx
  ENSRNOG00055015149 RatGTEx
  ENSRNOG00060019088 RatGTEx
  ENSRNOG00065005577 RatGTEx
Superfamily-SCOP N-(deoxy)ribosyltransferase-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A9T6_RAT UniProtKB/TrEMBL
  A6IJP1 ENTREZGENE, UniProtKB/TrEMBL
  BST1_RAT UniProtKB/Swiss-Prot
  F1LSX3 ENTREZGENE, UniProtKB/TrEMBL
  Q63072 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Bst1  bone marrow stromal cell antigen 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Bst1  bone marrow stromal cell antigen 1      Symbol and Name status set to provisional 70820 PROVISIONAL