Patz1 (POZ (BTB) and AT hook containing zinc finger 1)

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Gene: Patz1 (POZ (BTB) and AT hook containing zinc finger 1) Rattus norvegicus

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Symbol:

Patz1

Name:

POZ (BTB) and AT hook containing zinc finger 1

RGD ID:

1308337

Description:

Predicted to enable several functions, including DNA-binding transcription factor activity, RNA polymerase II-specific; RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; and ubiquitin protein ligase binding activity. Predicted to be involved in negative regulation of endothelial cell migration; regulation of gene expression; and regulation of immune system process. Predicted to act upstream of or within several processes, including T cell differentiation; male gonad development; and positive regulation of DNA-templated transcription. Predicted to be located in male germ cell nucleus. Predicted to be active in nucleoplasm. Orthologous to human PATZ1 (POZ/BTB and AT hook containing zinc finger 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC305471; POZ-, AT hook-, and zinc finger-containing protein 1; Zfp278; zinc finger protein 278; Znf278

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	82,378,226 - 82,396,679 (+)	NCBI		GRCr8
mRatBN7.2	14	78,154,590 - 78,173,032 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	78,152,516 - 78,173,032 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	82,595,751 - 82,614,012 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,835,865 - 83,854,125 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	80,281,599 - 80,299,861 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	83,509,763 - 83,528,898 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	83,510,278 - 83,528,898 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	84,198,755 - 84,217,034 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	83,905,714 - 83,936,768 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	83,915,647 - 83,934,526 (+)	NCBI
Celera	14	77,068,978 - 77,087,236 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

high grade glioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

arsenite(3-) (ISO)

arsenous acid (ISO)

asbestos (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

butanal (ISO)

C60 fullerene (EXP)

cadmium atom (ISO)

caffeine (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

copper(II) sulfate (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

entinostat (ISO)

folic acid (ISO)

FR900359 (ISO)

gentamycin (EXP)

methotrexate (ISO)

methylmercury chloride (ISO)

methylseleninic acid (ISO)

paracetamol (EXP)

progesterone (ISO)

quercitrin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

succimer (ISO)

titanium dioxide (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

male gonad development (ISO)

negative regulation of endothelial cell migration (ISO)

negative regulation of transcription by RNA polymerase II (IBA)

positive regulation of DNA-templated transcription (ISO)

regulation of cytokine production (IBA)

regulation of DNA-templated transcription (ISO)

regulation of gene expression (ISO)

regulation of immune system process (IBA)

spermatogenesis (ISO)

T cell differentiation (ISO)

Cellular Component

male germ cell nucleus (ISO)

nucleoplasm (IBA,ISO)

nucleus (ISO)

Molecular Function

chromatin binding (ISO)

DNA-binding transcription repressor activity, RNA polymerase II-specific (IBA)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA,ISO)

ubiquitin protein ligase binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
3.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10669750	PMID:12477932	PMID:16491076	PMID:18241078	PMID:27125250	PMID:27983982

Genomics

Comparative Map Data

Patz1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	82,378,226 - 82,396,679 (+)	NCBI		GRCr8
mRatBN7.2	14	78,154,590 - 78,173,032 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	78,152,516 - 78,173,032 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	82,595,751 - 82,614,012 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	83,835,865 - 83,854,125 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	80,281,599 - 80,299,861 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	83,509,763 - 83,528,898 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	83,510,278 - 83,528,898 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	84,198,755 - 84,217,034 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	83,905,714 - 83,936,768 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	14	83,915,647 - 83,934,526 (+)	NCBI
Celera	14	77,068,978 - 77,087,236 (+)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

PATZ1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	22	31,325,804 - 31,346,346 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	22	31,325,804 - 31,346,346 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	22	31,721,790 - 31,742,332 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	22	30,051,790 - 30,072,249 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	22	30,046,343 - 30,066,803	NCBI
Celera	22	15,522,280 - 15,542,738 (-)	NCBI		Celera
Cytogenetic Map	22	q12.2	NCBI
HuRef	22	14,683,379 - 14,703,837 (-)	NCBI		HuRef
CHM1_1	22	31,681,580 - 31,702,037 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	22	31,789,769 - 31,810,306 (-)	NCBI		T2T-CHM13v2.0

Patz1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	3,239,131 - 3,259,083 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	11	3,238,874 - 3,259,083 (+)	Ensembl		GRCm39 Ensembl
GRCm38	11	3,289,131 - 3,309,083 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	3,288,874 - 3,309,083 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	3,190,460 - 3,208,520 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	11	3,190,460 - 3,208,520 (+)	NCBI		MGSCv36	mm8
Celera	11	3,781,391 - 3,799,451 (+)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI
cM Map	11	2.3	NCBI

Patz1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955455	5,542,659 - 5,565,154 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955455	5,544,841 - 5,566,630 (-)	NCBI	ChiLan1.0	ChiLan1.0

PATZ1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	23	41,281,520 - 41,301,945 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	22	43,979,999 - 44,000,659 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	22	12,349,691 - 12,370,273 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	22	30,211,812 - 30,232,106 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	22	30,211,812 - 30,232,106 (-)	Ensembl	panpan1.1		panPan2

PATZ1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	26	24,277,719 - 24,296,440 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	26	24,278,802 - 24,296,154 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	26	24,147,525 - 24,166,353 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	26	24,660,928 - 24,679,758 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	26	24,660,945 - 24,679,628 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	26	24,364,111 - 24,382,938 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	26	24,626,189 - 24,645,033 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	26	24,687,638 - 24,706,466 (-)	NCBI		UU_Cfam_GSD_1.0

Patz1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	117,234,125 - 117,254,277 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936755	491,656 - 511,812 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936755	491,660 - 511,812 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PATZ1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	14	48,075,347 - 48,093,931 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	14	48,075,345 - 48,093,385 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	14	51,186,332 - 51,194,971 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PATZ1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	19	14,217,010 - 14,237,717 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	19	14,215,918 - 14,237,579 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	111,877,355 - 111,898,728 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Patz1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624747	7,822,591 - 7,842,403 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624747	7,823,009 - 7,841,997 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Patz1
34 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	701
Count of miRNA genes:	280
Interacting mature miRNAs:	360
Transcripts:	ENSRNOT00000025378
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	55624247	100624247	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	55147478	100147478	Rat
70153	Bp59	Blood pressure QTL 59	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	14	68757796	83368335	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	70053989	104886043	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	73415323	92554092	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	58184885	103184885	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	95876975	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	56631369	101631369	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	70053989	104886043	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	73415323	92554092	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	55624247	100624247	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	73415323	92554092	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	50023211	95023211	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat

Markers in Region

BE096205

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	78,177,442 - 78,177,597 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	83,533,309 - 83,533,463	NCBI	Rnor6.0
Rnor_5.0	14	84,221,445 - 84,221,599	UniSTS	Rnor5.0
RGSC_v3.4	14	83,928,663 - 83,928,817	UniSTS	RGSC3.4
Celera	14	77,091,647 - 77,091,801	UniSTS
RH 3.4 Map	14	517.5	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH143618

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	78,172,713 - 78,172,895 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	83,528,580 - 83,528,761	NCBI	Rnor6.0
Rnor_5.0	14	84,216,716 - 84,216,897	UniSTS	Rnor5.0
RGSC_v3.4	14	83,923,934 - 83,924,115	UniSTS	RGSC3.4
Celera	14	77,086,918 - 77,087,099	UniSTS
RH 3.4 Map	14	526.8	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH137686

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	78,152,916 - 78,153,164 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	83,508,783 - 83,509,030	NCBI	Rnor6.0
Rnor_5.0	14	84,196,920 - 84,197,167	UniSTS	Rnor5.0
RGSC_v3.4	14	83,904,137 - 83,904,384	UniSTS	RGSC3.4
Celera	14	77,067,202 - 77,067,449	UniSTS
RH 3.4 Map	14	531.8	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH141753

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	78,159,141 - 78,159,338 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	83,515,009 - 83,515,205	NCBI	Rnor6.0
Rnor_5.0	14	84,203,145 - 84,203,341	UniSTS	Rnor5.0
RGSC_v3.4	14	83,910,363 - 83,910,559	UniSTS	RGSC3.4
Celera	14	77,073,347 - 77,073,543	UniSTS
RH 3.4 Map	14	530.4	UniSTS
Cytogenetic Map	14	q21	UniSTS

BF418015

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	78,169,432 - 78,169,603 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	83,525,299 - 83,525,469	NCBI	Rnor6.0
Rnor_5.0	14	84,213,435 - 84,213,605	UniSTS	Rnor5.0
RGSC_v3.4	14	83,920,653 - 83,920,823	UniSTS	RGSC3.4
Celera	14	77,083,637 - 77,083,807	UniSTS
RH 3.4 Map	14	532.6	UniSTS
Cytogenetic Map	14	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001107231	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001277214	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001277215	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_102353	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_102354	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC094950	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC098801	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CK479676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV728999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DY318319	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EV764152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025378 ⟹ ENSRNOP00000025378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	78,152,516 - 78,173,032 (+)	Ensembl
Rnor_6.0 Ensembl	14	83,510,640 - 83,528,898 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000081161 ⟹ ENSRNOP00000073870

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	78,152,516 - 78,172,619 (+)	Ensembl
Rnor_6.0 Ensembl	14	83,510,278 - 83,519,405 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082242 ⟹ ENSRNOP00000072870

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	78,152,516 - 78,173,032 (+)	Ensembl
Rnor_6.0 Ensembl	14	83,510,640 - 83,528,898 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000089928 ⟹ ENSRNOP00000072370

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	83,510,640 - 83,515,371 (+)	Ensembl

RefSeq Acc Id:

NM_001107231 ⟹ NP_001100701

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	82,378,421 - 82,396,679 (+)	NCBI
mRatBN7.2	14	78,154,774 - 78,173,032 (+)	NCBI
Rnor_6.0	14	83,510,640 - 83,528,898 (+)	NCBI
Rnor_5.0	14	84,198,755 - 84,217,034 (+)	NCBI
RGSC_v3.4	14	83,905,714 - 83,936,768 (+)	RGD
Celera	14	77,068,978 - 77,087,236 (+)	NCBI

Sequence:

show sequence

ATGGAGCGGGTCAACGACGCTTCTTGCGGTCCGTCGGGCTGCTACACCTACCAGGTGAGCAGAC
ACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGT
GCTCCTACGGGTAGGCGATGAGAGCTTCCCAGCGCACCGCGCTGTACTGGCTGCCTGCAGCGAG
TACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGGAGCTGCAGACGGTGGTCCTGCTG
ATGTGGGAGGCGCGGCGGCGGCTCCAGGCGGCGGGGCTGGAGGCAGCCGCGAACTGGAGATGCA
CACCATCAGTTCCAAAGTGTTCGGAGACATCCTGGACTTCGCTTACACGTCCCGAATCGTTGTG
CGCCTAGAGAGCTTCCCCGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGAGGTCGGTCATCG
AGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTGGTGCCCCCTGCCCGGGCTGA
TATCATGCTCTTTCGCCCTCCTGGGACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGG
GCAGCCATGGCAGCCAACAGTAATGGTATTGCTGGCAGTATGCAGCCCGAGGAAGAGGCTGCCA
GGGCCACAGGTGCTGCTATTGCGGGCCAAGCTTCCCTGCCTGTGTTACCTGGGGTGGACAGATT
GCCCATGGTGGCTGGACCTCTATCCCCCCAACTACTGACTTCTCCATTCCCCAATGTGGCATCC
AGTGCACCTCCTCTGACTGGCAAGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGCTGGACT
CCATGTTTGGGTCTCCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGTAA
GGTGTTCACTGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAG
TTGGGCTATATCGATCTTCCTCCTCCAAGGCTGGGTGAGAATGGGTTACCCATCTCCGAGGACC
CCGACGGCCCCAGAAAAAGGAGCCGGACCAGGAAGCAGGTGGCTTGTGAGATCTGTGGCAAGAT
CTTTCGTGACGTATACCATCTCAACCGGCATAAGCTGTCCCACTCTGGGGAGAAGCCGTACTCG
TGCCCGGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGCATGTCGTACCATGTGAGGTCCCATG
ATGGGTCAGTGGGCAAACCGTACATCTGCCAGAGCTGTGGGAAAGGCTTCTCCAGGCCAGATCA
CTTGAATGGACATATCAAGCAGGTGCACACGTCTGAGCGCCCTCACAAATGTCAGACCTGCAAT
GCCTCCTTTGCCACTCGAGACCGCCTGCGCTCCCACCTGGCCTGCCATGAAGACAAGGTGCCCT
GCCAGGTGTGCGGAAAGTACTTGCGGGCAGCGTACATGGCTGACCACCTGAAGAAGCACAGCGA
GGGGCCCAGCAACTTCTGCAGTATCTGTAACCGAGAAGGCCAGAAATGCTCACATCAGGATCTG
ATTGAGAGCTCTGATTCCTATGGTGACCTCTCAGACGCCAGTGACCTGAAGACTCCAGAGAAAC
AGAGTGCCAACGGCTCTTTCTCCTGCGACATGGCAGTCCCTAAAAACAAAATGGAGTCTGACGG
GGAGAAGAAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCCTACTTGAACAAA
CACATCCAGAAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGGGACCTGGGCCCTGCCCTTG
GTTCACCTTTCTCTCCCCAGCAGAACATGTCTCTTCTCGAGTCCTTTGGATTTCAGATTGTTCA
GTCAGCGTTTGCATCATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATAGGGCCTGAAGGG
AAGTGAGAGATGCTGTGTCCCCACAGAACAGCCACTGGGGACTGCTGAGCAATGCTGTGAATGC
GGAGGGAAGTGATGTCTTTGGGTTCTGTAGCTGAGAGATTTTTATTCATTTTTAACCCCTGTCC
CTGCCCCTCCCTCCCTCCCTCCATTACCCCACCCCAATGTGGTCTTAGAAATAGACTCTCATCT
GATACTCTCTGTAGAAATACCTGAGAGATCCAGTATGGGACAAGGGCAGAAAGCACTACATAGG
CCTCTGAGGCAGCACCAGTCCTGATCTCTCTAGTGGTCTGAAGCCAGATTCCTGGTGCCCACTT
ATTGGTGATCCTAACCCCAGCTCCCAGGCACCTTGGCCTCACTCTGTAGTTTTGGCCCCTCCCA
GTTCTTTCATTCCTCACTCCCCTTCCTCTGTCTCTACCCTCTTATGGCCAGCCATTTTTAAGGA
AGCCAGAAACCTACAGCATCCCACGGACCATAGGACGAGTGTCCTCTGAGGTTGGCCCTGGTCT
CCCCAAGCTGCTGGAAGCGAACATTCGCTGTCAGGGCAAGCCCCTCCACTGAGGACGCCTCTCC
CCCAAATTCCAGTTCTTACTTGATTTTAACCATTCAACTTGCTGTTGGGTTTTATTCTCTAATT
CTTCTTGTTATTTTTAGGACCAGTTGTAGTGAATTGCTACTGAAAGCTACCCCAGGTGACACAG
AGCTCTTTGTAAACCGCAGTCACACATTAGGGTTAGTATTAAACTTTGTTTAGGTGTACCATAA
TTAACTTGGCTAGTTGTTTGAAGTCTATGGAAGAAATAGTTTTATGCAAAATTTTAAAAAAAAG
TTCCAGTCTGATCAGGAAGAGGGTTCAGTGCGTTGGGAGCCAGGAAGGTGGAAGAGCCTCAGGT
AGAGATGTTGTTCACCTTGACTGTGTTATGCTTGAGCAAGCCCAGGTTGACCTTGTGATGTGAA
TTGACCTGATCAGACTATATTAAAAACGTTAGTACGATAA

hide sequence

RefSeq Acc Id:

NM_001277214 ⟹ NP_001264143

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	82,378,421 - 82,396,679 (+)	NCBI
mRatBN7.2	14	78,154,774 - 78,173,032 (+)	NCBI
Rnor_6.0	14	83,510,640 - 83,528,898 (+)	NCBI
Rnor_5.0	14	84,198,755 - 84,217,034 (+)	NCBI
Celera	14	77,068,978 - 77,087,236 (+)	NCBI

Sequence:

show sequence

ATGGAGCGGGTCAACGACGCTTCTTGCGGTCCGTCGGGCTGCTACACCTACCAGGTGAGCAGAC
ACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGT
GCTCCTACGGGTAGGCGATGAGAGCTTCCCAGCGCACCGCGCTGTACTGGCTGCCTGCAGCGAG
TACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGGAGCTGCAGACGGTGGTCCTGCTG
ATGTGGGAGGCGCGGCGGCGGCTCCAGGCGGCGGGGCTGGAGGCAGCCGCGAACTGGAGATGCA
CACCATCAGTTCCAAAGTGTTCGGAGACATCCTGGACTTCGCTTACACGTCCCGAATCGTTGTG
CGCCTAGAGAGCTTCCCCGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGAGGTCGGTCATCG
AGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTGGTGCCCCCTGCCCGGGCTGA
TATCATGCTCTTTCGCCCTCCTGGGACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGG
GCAGCCATGGCAGCCAACAGTAATGGTATTGCTGGCAGTATGCAGCCCGAGGAAGAGGCTGCCA
GGGCCACAGGTGCTGCTATTGCGGGCCAAGCTTCCCTGCCTGTGTTACCTGGGGTGGACAGATT
GCCCATGGTGGCTGGACCTCTATCCCCCCAACTACTGACTTCTCCATTCCCCAATGTGGCATCC
AGTGCACCTCCTCTGACTGGCAAGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGCTGGACT
CCATGTTTGGGTCTCCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGTAA
GGTGTTCACTGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAG
TTGGGCTATATCGATCTTCCTCCTCCAAGGCTGGGTGAGAATGGGTTACCCATCTCCGAGGACC
CCGACGGCCCCAGAAAAAGGAGCCGGACCAGGAAGCAGGTGGCTTGTGAGATCTGTGGCAAGAT
CTTTCGTGACGTATACCATCTCAACCGGCATAAGCTGTCCCACTCTGGGGAGAAGCCGTACTCG
TGCCCGGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGCATGTCGTACCATGTGAGGTCCCATG
ATGGGTCAGTGGGCAAACCGTACATCTGCCAGAGCTGTGGGAAAGGCTTCTCCAGGCCAGATCA
CTTGAATGGACATATCAAGCAGGTGCACACGTCTGAGCGCCCTCACAAATGTCAGACCTGCAAT
GCCTCCTTTGCCACTCGAGACCGCCTGCGCTCCCACCTGGCCTGCCATGAAGACAAGGTGCCCT
GCCAGGTGTGCGGAAAGTACTTGCGGGCAGCGTACATGGCTGACCACCTGAAGAAGCACAGCGA
GGGGCCCAGCAACTTCTGCAGTATCTGTAACCGAGGTCTCCAGGCACCAGGAACCCATCCTGAA
TGGGGGAGCAGCGTTCCACTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGAAATGCTCACAT
CAGGATCTGATTGAGAGCTCTGATTCCTATGGTGACCTCTCAGACGCCAGTGACCTGAAGACTC
CAGAGAAACAGAGTGCCAACGGCTCTTTCTCCTGCGACATGGCAGTCCCTAAAAACAAAATGGA
GTCTGACGGGGAGAAGAAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCCTAC
TTGAACAAACACATCCAGAAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGGGACCTGGGCC
CTGCCCTTGGTTCACCTTTCTCTCCCCAGCAGAACATGTCTCTTCTCGAGTCCTTTGGATTTCA
GATTGTTCAGTCAGCGTTTGCATCATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATAGGG
CCTGAAGGGAAGTGAGAGATGCTGTGTCCCCACAGAACAGCCACTGGGGACTGCTGAGCAATGC
TGTGAATGCGGAGGGAAGTGATGTCTTTGGGTTCTGTAGCTGAGAGATTTTTATTCATTTTTAA
CCCCTGTCCCTGCCCCTCCCTCCCTCCCTCCATTACCCCACCCCAATGTGGTCTTAGAAATAGA
CTCTCATCTGATACTCTCTGTAGAAATACCTGAGAGATCCAGTATGGGACAAGGGCAGAAAGCA
CTACATAGGCCTCTGAGGCAGCACCAGTCCTGATCTCTCTAGTGGTCTGAAGCCAGATTCCTGG
TGCCCACTTATTGGTGATCCTAACCCCAGCTCCCAGGCACCTTGGCCTCACTCTGTAGTTTTGG
CCCCTCCCAGTTCTTTCATTCCTCACTCCCCTTCCTCTGTCTCTACCCTCTTATGGCCAGCCAT
TTTTAAGGAAGCCAGAAACCTACAGCATCCCACGGACCATAGGACGAGTGTCCTCTGAGGTTGG
CCCTGGTCTCCCCAAGCTGCTGGAAGCGAACATTCGCTGTCAGGGCAAGCCCCTCCACTGAGGA
CGCCTCTCCCCCAAATTCCAGTTCTTACTTGATTTTAACCATTCAACTTGCTGTTGGGTTTTAT
TCTCTAATTCTTCTTGTTATTTTTAGGACCAGTTGTAGTGAATTGCTACTGAAAGCTACCCCAG
GTGACACAGAGCTCTTTGTAAACCGCAGTCACACATTAGGGTTAGTATTAAACTTTGTTTAGGT
GTACCATAATTAACTTGGCTAGTTGTTTGAAGTCTATGGAAGAAATAGTTTTATGCAAAATTTT
AAAAAAAAGTTCCAGTCTGATCAGGAAGAGGGTTCAGTGCGTTGGGAGCCAGGAAGGTGGAAGA
GCCTCAGGTAGAGATGTTGTTCACCTTGACTGTGTTATGCTTGAGCAAGCCCAGGTTGACCTTG
TGATGTGAATTGACCTGATCAGACTATATTAAAAACGTTAGTACGATAA

hide sequence

RefSeq Acc Id:

NM_001277215 ⟹ NP_001264144

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	82,378,421 - 82,383,152 (+)	NCBI
mRatBN7.2	14	78,154,774 - 78,159,504 (+)	NCBI
Rnor_6.0	14	83,510,640 - 83,515,371 (+)	NCBI
Rnor_5.0	14	84,198,755 - 84,217,034 (+)	NCBI
Celera	14	77,068,978 - 77,073,709 (+)	NCBI

Sequence:

show sequence

ATGGAGCGGGTCAACGACGCTTCTTGCGGTCCGTCGGGCTGCTACACCTACCAGGTGAGCAGAC
ACAGTACGGAGATGCTGCACAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGT
GCTCCTACGGGTAGGCGATGAGAGCTTCCCAGCGCACCGCGCTGTACTGGCTGCCTGCAGCGAG
TACTTTGAGTCTGTGTTCAGCGCCCAGTTAGGCGACGGCGGAGCTGCAGACGGTGGTCCTGCTG
ATGTGGGAGGCGCGGCGGCGGCTCCAGGCGGCGGGGCTGGAGGCAGCCGCGAACTGGAGATGCA
CACCATCAGTTCCAAAGTGTTCGGAGACATCCTGGACTTCGCTTACACGTCCCGAATCGTTGTG
CGCCTAGAGAGCTTCCCCGAGCTCATGACGGCCGCCAAGTTCCTGCTGATGAGGTCGGTCATCG
AGATCTGCCAGGAAGTAATCAAACAGTCCAACGTGCAGATCCTGGTGCCCCCTGCCCGGGCTGA
TATCATGCTCTTTCGCCCTCCTGGGACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGG
GCAGCCATGGCAGCCAACAGTAATGGTATTGCTGGCAGTATGCAGCCCGAGGAAGAGGCTGCCA
GGGCCACAGGTGCTGCTATTGCGGGCCAAGCTTCCCTGCCTGTGTTACCTGGGGTGGACAGATT
GCCCATGGTGGCTGGACCTCTATCCCCCCAACTACTGACTTCTCCATTCCCCAATGTGGCATCC
AGTGCACCTCCTCTGACTGGCAAGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGCTGGACT
CCATGTTTGGGTCTCCAGGGGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGTAA
GGTGTTCACTGACGCCAACCGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAG
TTGGGCTATATCGATCTTCCTCCTCCAAGGCTGGGTGAGAATGGGTTACCCATCTCCGAGGACC
CCGACGGCCCCAGAAAAAGGAGCCGGACCAGGAAGCAGGTGGCTTGTGAGATCTGTGGCAAGAT
CTTTCGTGACGTATACCATCTCAACCGGCATAAGCTGTCCCACTCTGGGGAGAAGCCGTACTCG
TGCCCGGTGTGTGGTCTGCGGTTCAAGAGAAAAGACCGCATGTCGTACCATGTGAGGTCCCATG
ATGGGTCAGTGGGCAAACCGTACATCTGCCAGAGCTGTGGGAAAGGCTTCTCCAGGCCAGATCA
CTTGAATGGACATATCAAGCAGGTGCACACGTCTGAGCGCCCTCACAAATGTCAGGTGTGGGTT
GGGAGCAGCAGCGGCCTGCCGCCCCTGGAACCTCTTCCTAGCGACCTGCCATCATGGGACTTTG
CCCAGCCTGCTTTGTGGAGGTCGTCCCATTCAGTTCCTGATACCGCCTTTTCCCTCTCTCTAAA
AAAGTCCTTCCCAGCCCTTGAAAACCTGAGTCCAGCACACTCCAGCAATACGCTCTTCTGCTCA
GCTCCACCAGGATACCTGAGACAGGGTTGGACAACCCCTGAGGGCAGCCGGGCTTTTACTCAGT
GGCCTGTGGGCTAGCCTGGGTCCTTCTGGAGAGGTGGAGGCGAATGGTGGCTGACTGGAGAGCC
CTGCTTTGGCAGAGGCTAGCTAGCGAGACTGTTCCTGCCCACCACTCCCAGATCCTCCCAAGAT
GTCCGAACATTTTTTTCCAGCTCAAAGCTCTCACATAGCAATAGGAAGGCCCACCTTTCTGAAG
GTCCCCCTCCCCTGGTGGGCTCCATGTTCCTTTCTGAATGCTTGTCTCCCCTACCTCAACGGGG
CAGCCAACCTTGTCTGGGGATTTAGAAGTTGGGAGTTGTAGGGCATTAAGCCCCAGCTTCTGTG
ACCCTTCCTCTGGCCTCACTTTTTCACACTCACTGGGACTCCTGGTCATCCTCCTCCTATGGGG
GTGTCACCCCATTTCCAGAGAAGCCTCCAGCACAGCGTCAGCTGGGTTTGGCTGTGCTGCTGAA
CTCTCCACCTCACAAGGGCCTGCTTTCAGTTCTGGCTCCTGAGTTCTCGTGTCTGAGGGGTTTT
AGCTGGTCTGCTCTACACTAACCAGTAGTAGCCTTTGTACTGTGATAGATGGCTTTAGGGGCTG
ACAGAGCAGGTAGACCCTCCCTTCCCCAGGGCCCCTTGGTGTGTCCCTTAGCCCCTGGAGATCA
GGATCGATGATAAAAGTTTTCATTCTAACATTAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NR_102353

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	82,380,732 - 82,396,679 (+)	NCBI
mRatBN7.2	14	78,157,085 - 78,173,032 (+)	NCBI
Rnor_6.0	14	83,512,951 - 83,528,898 (+)	NCBI
Rnor_5.0	14	84,198,755 - 84,217,034 (+)	NCBI
Celera	14	77,071,289 - 77,087,236 (+)	NCBI

Sequence:

show sequence

ATGAGTCCCACACCCACCCCTCCCCGAAAGGCTGGGCAAGGCATCCCTGTGTCATTCTAAAGCT
GCTGCCTCAGGCCAGATCACTTGAATGGACATATCAAGCAGGTGCACACGTCTGAGCGCCCTCA
CAAATGTCAGACCTGCAATGCCTCCTTTGCCACTCGAGACCGCCTGCGCTCCCACCTGGCCTGC
CATGAAGACAAGGTGCCCTGCCAGGTGTGCGGAAAGTACTTGCGGGCAGCGTACATGGCTGACC
ACCTGAAGAAGCACAGCGAGGGGCCCAGCAACTTCTGCAGTATCTGTAACCGAGAAGGCCAGAA
ATGCTCACATCAGGATCTGATTGAGAGCTCTGATTCCTATGGTGACCTCTCAGACGCCAGTGAC
CTGAAGACTCCAGAGAAACAGAGTGCCAACGGCTCTTTCTCCTGCGACATGGCAGTCCCTAAAA
ACAAAATGGAGTCTGACGGGGAGAAGAAGTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTC
TAAGTCCTACTTGAACAAACACATCCAGAAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGG
GACCTGGGCCCTGCCCTTGGTTCACCTTTCTCTCCCCAGCAGAACATGTCTCTTCTCGAGTCCT
TTGGATTTCAGATTGTTCAGTCAGCGTTTGCATCATCTTTAGTGGATCCTGAGGTGGACCAGCA
GCCCATAGGGCCTGAAGGGAAGTGAGAGATGCTGTGTCCCCACAGAACAGCCACTGGGGACTGC
TGAGCAATGCTGTGAATGCGGAGGGAAGTGATGTCTTTGGGTTCTGTAGCTGAGAGATTTTTAT
TCATTTTTAACCCCTGTCCCTGCCCCTCCCTCCCTCCCTCCATTACCCCACCCCAATGTGGTCT
TAGAAATAGACTCTCATCTGATACTCTCTGTAGAAATACCTGAGAGATCCAGTATGGGACAAGG
GCAGAAAGCACTACATAGGCCTCTGAGGCAGCACCAGTCCTGATCTCTCTAGTGGTCTGAAGCC
AGATTCCTGGTGCCCACTTATTGGTGATCCTAACCCCAGCTCCCAGGCACCTTGGCCTCACTCT
GTAGTTTTGGCCCCTCCCAGTTCTTTCATTCCTCACTCCCCTTCCTCTGTCTCTACCCTCTTAT
GGCCAGCCATTTTTAAGGAAGCCAGAAACCTACAGCATCCCACGGACCATAGGACGAGTGTCCT
CTGAGGTTGGCCCTGGTCTCCCCAAGCTGCTGGAAGCGAACATTCGCTGTCAGGGCAAGCCCCT
CCACTGAGGACGCCTCTCCCCCAAATTCCAGTTCTTACTTGATTTTAACCATTCAACTTGCTGT
TGGGTTTTATTCTCTAATTCTTCTTGTTATTTTTAGGACCAGTTGTAGTGAATTGCTACTGAAA
GCTACCCCAGGTGACACAGAGCTCTTTGTAAACCGCAGTCACACATTAGGGTTAGTATTAAACT
TTGTTTAGGTGTACCATAATTAACTTGGCTAGTTGTTTGAAGTCTATGGAAGAAATAGTTTTAT
GCAAAATTTTAAAAAAAAGTTCCAGTCTGATCAGGAAGAGGGTTCAGTGCGTTGGGAGCCAGGA
AGGTGGAAGAGCCTCAGGTAGAGATGTTGTTCACCTTGACTGTGTTATGCTTGAGCAAGCCCAG
GTTGACCTTGTGATGTGAATTGACCTGATCAGACTATATTAAAAACGTTAGTACGATAA

hide sequence

RefSeq Acc Id:

NR_102354

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	82,380,732 - 82,383,152 (+)	NCBI
mRatBN7.2	14	78,157,085 - 78,159,504 (+)	NCBI
Rnor_6.0	14	83,512,951 - 83,515,371 (+)	NCBI
Rnor_5.0	14	84,198,755 - 84,217,034 (+)	NCBI
Celera	14	77,071,289 - 77,073,709 (+)	NCBI

Sequence:

show sequence

ATGAGTCCCACACCCACCCCTCCCCGAAAGGCTGGGCAAGGCATCCCTGTGTCATTCTAAAGCT
GCTGCCTCAGGCCAGATCACTTGAATGGACATATCAAGCAGGTGCACACGTCTGAGCGCCCTCA
CAAATGTCAGGTGTGGGTTGGGAGCAGCAGCGGCCTGCCGCCCCTGGAACCTCTTCCTAGCGAC
CTGCCATCATGGGACTTTGCCCAGCCTGCTTTGTGGAGGTCGTCCCATTCAGTTCCTGATACCG
CCTTTTCCCTCTCTCTAAAAAAGTCCTTCCCAGCCCTTGAAAACCTGAGTCCAGCACACTCCAG
CAATACGCTCTTCTGCTCAGCTCCACCAGGATACCTGAGACAGGGTTGGACAACCCCTGAGGGC
AGCCGGGCTTTTACTCAGTGGCCTGTGGGCTAGCCTGGGTCCTTCTGGAGAGGTGGAGGCGAAT
GGTGGCTGACTGGAGAGCCCTGCTTTGGCAGAGGCTAGCTAGCGAGACTGTTCCTGCCCACCAC
TCCCAGATCCTCCCAAGATGTCCGAACATTTTTTTCCAGCTCAAAGCTCTCACATAGCAATAGG
AAGGCCCACCTTTCTGAAGGTCCCCCTCCCCTGGTGGGCTCCATGTTCCTTTCTGAATGCTTGT
CTCCCCTACCTCAACGGGGCAGCCAACCTTGTCTGGGGATTTAGAAGTTGGGAGTTGTAGGGCA
TTAAGCCCCAGCTTCTGTGACCCTTCCTCTGGCCTCACTTTTTCACACTCACTGGGACTCCTGG
TCATCCTCCTCCTATGGGGGTGTCACCCCATTTCCAGAGAAGCCTCCAGCACAGCGTCAGCTGG
GTTTGGCTGTGCTGCTGAACTCTCCACCTCACAAGGGCCTGCTTTCAGTTCTGGCTCCTGAGTT
CTCGTGTCTGAGGGGTTTTAGCTGGTCTGCTCTACACTAACCAGTAGTAGCCTTTGTACTGTGA
TAGATGGCTTTAGGGGCTGACAGAGCAGGTAGACCCTCCCTTCCCCAGGGCCCCTTGGTGTGTC
CCTTAGCCCCTGGAGATCAGGATCGATGATAAAAGTTTTCATTCTAACATTAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006251292 ⟹ XP_006251354

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	82,378,226 - 82,396,679 (+)	NCBI
mRatBN7.2	14	78,154,590 - 78,173,032 (+)	NCBI
Rnor_6.0	14	83,509,763 - 83,528,898 (+)	NCBI
Rnor_5.0	14	84,198,755 - 84,217,034 (+)	NCBI

Sequence:

show sequence

CCCAGGCTAGGGAGCCCGATGCGCACGTGCTGGGCCGGGGCCACCGAGACCCCCCACGCCGAGC
TCACTGCTTTCTTCTTTCTGCAAGCTGGGGGGGGTGTTGTTGGTATCGCCCCCTCCTTCTCCTC
CCCCCAGGGGTGAAAGTGCAAGAGGAAGTGCAGCCGCTGCCATCTTTCCTCCGTTCCGAACGCA
CGGAGCCTGGGGCCGCAGCGCCGCCGCCACTCGTGCCTGGCTTGGGAAAGGGCCCACCCTGCTG
CAGCCACCCGCTCGCTTCGGTCGCCGCCTTCGCCGGGCTCCAAGACCCGGCCTACGCCACCGCC
CCCGTGCGCGCCGACCGCCGCCTTCGCCTTCGCCTTTTGTTTCCTTTGCTCCGGCGCCCCCACC
CCGGCTCGCGCTTTGCAGGGGACGCAGCGCGCGCCCCCAGCGGGCCCGGGAAAAGCCTCGGAGC
GCGCGCTTGCGCTTGCGCGGCGGACCCCTCCTCCTCCCCGCGCGCGCGCGCCTTTTGGCTGCGC
GCCGGCGCCGCCTGGCGGGCGGGAGGGGAGGTGGCAGCCGCTTTTGCCGGAGGGGCGCACCTCT
TCGCTCGTTTACCCCCTGGAAGGTAGACCTAGAGAGGGAGGCGGGCAGGCGGAGAGGGAGTGCT
ACGCGGGTCCGGGGTAGGTTAAGCGCGGCTATGTGGGGGGCAATGCCCCGCTGGGTCTAGGCCT
TTTTATTAGAGCAGGGGGCGTGTGCGCTGGGCGCACCTTAGAGTACTACGGAGCCCTGGGCCGC
ACGTGCCGGGAGTGTGAGTGGTCCGCTGCACAAGGCGTCTCGCTGCTTAAGGGAAGGGACTAGG
GACTGGCGGGTGCCCGGCCCGGCTAGTGGGGAAGGGGCAGCGACCATGGAGCGGGTCAACGACG
CTTCTTGCGGTCCGTCGGGCTGCTACACCTACCAGGTGAGCAGACACAGTACGGAGATGCTGCA
CAACCTGAACCAACAACGCAAAAACGGCGGGCGCTTTTGCGACGTGCTCCTACGGGTAGGCGAT
GAGAGCTTCCCAGCGCACCGCGCTGTACTGGCTGCCTGCAGCGAGTACTTTGAGTCTGTGTTCA
GCGCCCAGTTAGGCGACGGCGGAGCTGCAGACGGTGGTCCTGCTGATGTGGGAGGCGCGGCGGC
GGCTCCAGGCGGCGGGGCTGGAGGCAGCCGCGAACTGGAGATGCACACCATCAGTTCCAAAGTG
TTCGGAGACATCCTGGACTTCGCTTACACGTCCCGAATCGTTGTGCGCCTAGAGAGCTTCCCCG
AGCTCATGACGGCCGCCAAGTTCCTGCTGATGAGGTCGGTCATCGAGATCTGCCAGGAAGTAAT
CAAACAGTCCAACGTGCAGATCCTGGTGCCCCCTGCCCGGGCTGATATCATGCTCTTTCGCCCT
CCTGGGACTTCTGACTTGGGCTTCCCTTTGGACATGACCAACGGGGCAGCCATGGCAGCCAACA
GTAATGGTATTGCTGGCAGTATGCAGCCCGAGGAAGAGGCTGCCAGGGCCACAGGTGCTGCTAT
TGCGGGCCAAGCTTCCCTGCCTGTGTTACCTGGGGTGGACAGATTGCCCATGGTGGCTGGACCT
CTATCCCCCCAACTACTGACTTCTCCATTCCCCAATGTGGCATCCAGTGCACCTCCTCTGACTG
GCAAGCGAGGCCGGGGACGCCCCAGGAAGGCCAACCTGCTGGACTCCATGTTTGGGTCTCCAGG
GGGCTTGAGGGAAGCAGGCATCCTTCCATGTGGCCTGTGCGGTAAGGTGTTCACTGACGCCAAC
CGGCTCCGGCAACATGAGGCCCAGCACGGCGTCACAAGCCTCCAGTTGGGCTATATCGATCTTC
CTCCTCCAAGGCTGGGTGAGAATGGGTTACCCATCTCCGAGGACCCCGACGGCCCCAGAAAAAG
GAGCCGGACCAGGAAGCAGGTGGCTTGTGAGATCTGTGGCAAGATCTTTCGTGACGTATACCAT
CTCAACCGGCATAAGCTGTCCCACTCTGGGGAGAAGCCGTACTCGTGCCCGGTGTGTGGTCTGC
GGTTCAAGAGAAAAGACCGCATGTCGTACCATGTGAGGTCCCATGATGGGTCAGTGGGCAAACC
GTACATCTGCCAGAGCTGTGGGAAAGGCTTCTCCAGGCCAGATCACTTGAATGGACATATCAAG
CAGGTGCACACGTCTGAGCGCCCTCACAAATGTCAGACCTGCAATGCCTCCTTTGCCACTCGAG
ACCGCCTGCGCTCCCACCTGGCCTGCCATGAAGACAAGGTGCCCTGCCAGGTGTGCGGAAAGTA
CTTGCGGGCAGCGTACATGGCTGACCACCTGAAGAAGCACAGCGAGGGGCCCAGCAACTTCTGC
AGTATCTGTAACCGAGGTTTCTCCTCTGCCTCCTACTTAAAGGTCCATGTTAAAACCCACCACG
GTGTTCCCCTTCCCCAGGTCTCCAGGCACCAGGAACCCATCCTGAATGGGGGAGCAGCGTTCCA
CTGCGCCAGGACCTATGGCAACAAAGAAGGCCAGAAATGCTCACATCAGGATCTGATTGAGAGC
TCTGATTCCTATGGTGACCTCTCAGACGCCAGTGACCTGAAGACTCCAGAGAAACAGAGTGCCA
ACGGCTCTTTCTCCTGCGACATGGCAGTCCCTAAAAACAAAATGGAGTCTGACGGGGAGAAGAA
GTACCCATGCCCTGAATGTGGGAGCTTCTTCCGTTCTAAGTCCTACTTGAACAAACACATCCAG
AAGGTGCATGTCCGTGCCCTTGGGGGTCCCTTGGGGGACCTGGGCCCTGCCCTTGGTTCACCTT
TCTCTCCCCAGCAGAACATGTCTCTTCTCGAGTCCTTTGGATTTCAGATTGTTCAGTCAGCGTT
TGCATCATCTTTAGTGGATCCTGAGGTGGACCAGCAGCCCATAGGGCCTGAAGGGAAGTGAGAG
ATGCTGTGTCCCCACAGAACAGCCACTGGGGACTGCTGAGCAATGCTGTGAATGCGGAGGGAAG
TGATGTCTTTGGGTTCTGTAGCTGAGAGATTTTTATTCATTTTTAACCCCTGTCCCTGCCCCTC
CCTCCCTCCCTCCATTACCCCACCCCAATGTGGTCTTAGAAATAGACTCTCATCTGATACTCTC
TGTAGAAATACCTGAGAGATCCAGTATGGGACAAGGGCAGAAAGCACTACATAGGCCTCTGAGG
CAGCACCAGTCCTGATCTCTCTAGTGGTCTGAAGCCAGATTCCTGGTGCCCACTTATTGGTGAT
CCTAACCCCAGCTCCCAGGCACCTTGGCCTCACTCTGTAGTTTTGGCCCCTCCCAGTTCTTTCA
TTCCTCACTCCCCTTCCTCTGTCTCTACCCTCTTATGGCCAGCCATTTTTAAGGAAGCCAGAAA
CCTACAGCATCCCACGGACCATAGGACGAGTGTCCTCTGAGGTTGGCCCTGGTCTCCCCAAGCT
GCTGGAAGCGAACATTCGCTGTCAGGGCAAGCCCCTCCACTGAGGACGCCTCTCCCCCAAATTC
CAGTTCTTACTTGATTTTAACCATTCAACTTGCTGTTGGGTTTTATTCTCTAATTCTTCTTGTT
ATTTTTAGGACCAGTTGTAGTGAATTGCTACTGAAAGCTACCCCAGGTGACACAGAGCTCTTTG
TAAACCGCAGTCACACATTAGGGTTAGTATTAAACTTTGTTTAGGTGTACCATAATTAACTTGG
CTAGTTGTTTGAAGTCTATGGAAGAAATAGTTTTATGCAAAATTTTAAAAAAAAGTTCCAGTCT
GATCAGGAAGAGGGTTCAGTGCGTTGGGAGCCAGGAAGGTGGAAGAGCCTCAGGTAGAGATGTT
GTTCACCTTGACTGTGTTATGCTTGAGCAAGCCCAGGTTGACCTTGTGATGTGAATTGACCTGA
TCAGACTATATTAAAAACGTTAGTACGATAA

hide sequence

RefSeq Acc Id:

XM_039092005 ⟹ XP_038947933

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	82,378,226 - 82,393,920 (+)	NCBI
mRatBN7.2	14	78,154,590 - 78,170,271 (+)	NCBI

RefSeq Acc Id:

XM_063273186 ⟹ XP_063129256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	82,378,226 - 82,393,925 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100701	(Get FASTA)	NCBI Sequence Viewer
	NP_001264143	(Get FASTA)	NCBI Sequence Viewer
	NP_001264144	(Get FASTA)	NCBI Sequence Viewer
	XP_006251354	(Get FASTA)	NCBI Sequence Viewer
	XP_038947933	(Get FASTA)	NCBI Sequence Viewer
	XP_063129256	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH98801	(Get FASTA)	NCBI Sequence Viewer
	EDM00160	(Get FASTA)	NCBI Sequence Viewer
	EDM00161	(Get FASTA)	NCBI Sequence Viewer
	EDM00162	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025378.2
	ENSRNOP00000072870.2
	ENSRNOP00000073870.1

RefSeq Acc Id:	NP_001100701 ⟸ NM_001107231
- Peptide Label:	isoform 1
- UniProtKB:	D3ZX15 (UniProtKB/TrEMBL), A6IK96 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERVNDASCGPSGCYTYQVSRHSTEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLAACSE YFESVFSAQLGDGGAADGGPADVGGAAAAPGGGAGGSRELEMHTISSKVFGDILDFAYTSRIVV RLESFPELMTAAKFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGTSDLGFPLDMTNG AAMAANSNGIAGSMQPEEEAARATGAAIAGQASLPVLPGVDRLPMVAGPLSPQLLTSPFPNVAS SAPPLTGKRGRGRPRKANLLDSMFGSPGGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ LGYIDLPPPRLGENGLPISEDPDGPRKRSRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQTCN ASFATRDRLRSHLACHEDKVPCQVCGKYLRAAYMADHLKKHSEGPSNFCSICNREGQKCSHQDL IESSDSYGDLSDASDLKTPEKQSANGSFSCDMAVPKNKMESDGEKKYPCPECGSFFRSKSYLNK HIQKVHVRALGGPLGDLGPALGSPFSPQQNMSLLESFGFQIVQSAFASSLVDPEVDQQPIGPEG K hide sequence

RefSeq Acc Id:	NP_001264143 ⟸ NM_001277214
- Peptide Label:	isoform 2
- UniProtKB:	A0A0G2K420 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERVNDASCGPSGCYTYQVSRHSTEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLAACSE YFESVFSAQLGDGGAADGGPADVGGAAAAPGGGAGGSRELEMHTISSKVFGDILDFAYTSRIVV RLESFPELMTAAKFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGTSDLGFPLDMTNG AAMAANSNGIAGSMQPEEEAARATGAAIAGQASLPVLPGVDRLPMVAGPLSPQLLTSPFPNVAS SAPPLTGKRGRGRPRKANLLDSMFGSPGGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ LGYIDLPPPRLGENGLPISEDPDGPRKRSRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQTCN ASFATRDRLRSHLACHEDKVPCQVCGKYLRAAYMADHLKKHSEGPSNFCSICNRGLQAPGTHPE WGSSVPLRQDLWQQRRPEMLTSGSD hide sequence

RefSeq Acc Id:	NP_001264144 ⟸ NM_001277215
- Peptide Label:	isoform 3
- UniProtKB:	A0A0G2K2T7 (UniProtKB/TrEMBL), Q4G032 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERVNDASCGPSGCYTYQVSRHSTEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLAACSE YFESVFSAQLGDGGAADGGPADVGGAAAAPGGGAGGSRELEMHTISSKVFGDILDFAYTSRIVV RLESFPELMTAAKFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGTSDLGFPLDMTNG AAMAANSNGIAGSMQPEEEAARATGAAIAGQASLPVLPGVDRLPMVAGPLSPQLLTSPFPNVAS SAPPLTGKRGRGRPRKANLLDSMFGSPGGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ LGYIDLPPPRLGENGLPISEDPDGPRKRSRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWV GSSSGLPPLEPLPSDLPSWDFAQPALWRSSHSVPDTAFSLSLKKSFPALENLSPAHSSNTLFCS APPGYLRQGWTTPEGSRAFTQWPVG hide sequence

RefSeq Acc Id:	XP_006251354 ⟸ XM_006251292
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K420 (UniProtKB/TrEMBL)
- Sequence:	show sequence MERVNDASCGPSGCYTYQVSRHSTEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLAACSE YFESVFSAQLGDGGAADGGPADVGGAAAAPGGGAGGSRELEMHTISSKVFGDILDFAYTSRIVV RLESFPELMTAAKFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGTSDLGFPLDMTNG AAMAANSNGIAGSMQPEEEAARATGAAIAGQASLPVLPGVDRLPMVAGPLSPQLLTSPFPNVAS SAPPLTGKRGRGRPRKANLLDSMFGSPGGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQ LGYIDLPPPRLGENGLPISEDPDGPRKRSRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS CPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQTCN ASFATRDRLRSHLACHEDKVPCQVCGKYLRAAYMADHLKKHSEGPSNFCSICNRGFSSASYLKV HVKTHHGVPLPQVSRHQEPILNGGAAFHCARTYGNKEGQKCSHQDLIESSDSYGDLSDASDLKT PEKQSANGSFSCDMAVPKNKMESDGEKKYPCPECGSFFRSKSYLNKHIQKVHVRALGGPLGDLG PALGSPFSPQQNMSLLESFGFQIVQSAFASSLVDPEVDQQPIGPEGK hide sequence

Ensembl Acc Id:

ENSRNOP00000072870 ⟸ ENSRNOT00000082242

Ensembl Acc Id:

ENSRNOP00000072370 ⟸ ENSRNOT00000089928

Ensembl Acc Id:

ENSRNOP00000073870 ⟸ ENSRNOT00000081161

Ensembl Acc Id:

ENSRNOP00000025378 ⟸ ENSRNOT00000025378

RefSeq Acc Id:	XP_038947933 ⟸ XM_039092005
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K6M4 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129256 ⟸ XM_063273186
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2K6M4 (UniProtKB/TrEMBL)

Protein Domains

BTB C2H2-type

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZX15-F1-model_v2	AlphaFold	D3ZX15	1-641	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1308337	AgrOrtholog
BioCyc Gene	G2FUF-15235	BioCyc
Ensembl Genes	ENSRNOG00000018709	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025378.5	UniProtKB/TrEMBL
	ENSRNOT00000081161.2	UniProtKB/TrEMBL
	ENSRNOT00000082242.2	UniProtKB/TrEMBL
Gene3D-CATH	Classic Zinc Finger	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7376163	IMAGE-MGC_LOAD
InterPro	BTB/POZ-like	UniProtKB/TrEMBL
	BTB/POZ_fold	UniProtKB/TrEMBL
	HMGI/Y_DNA-bd_CS	UniProtKB/TrEMBL
	Znf_C2H2/integrase_DNA-bd	UniProtKB/TrEMBL
	Znf_C2H2_sf	UniProtKB/TrEMBL
KEGG Report	rno:305471	UniProtKB/TrEMBL
MGC_CLONE	MGC:112843	IMAGE-MGC_LOAD
NCBI Gene	305471	ENTREZGENE
PANTHER	VASCULAR ENDOTHELIAL ZINC FINGER 1	UniProtKB/TrEMBL
	ZINC FINGER AND BTB DOMAIN-CONTAINING PROTEIN 11	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	BTB	UniProtKB/TrEMBL
	zf-C2H2	UniProtKB/TrEMBL
	zf-C2H2_4	UniProtKB/TrEMBL
	zf-C2H2_6	UniProtKB/TrEMBL
	zf-C2H2_assoc3	UniProtKB/TrEMBL
PhenoGen	Patz1	PhenoGen
PROSITE	BTB	UniProtKB/TrEMBL
	HMGI_Y	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_1	UniProtKB/TrEMBL
	ZINC_FINGER_C2H2_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018709	RatGTEx
SMART	BTB	UniProtKB/TrEMBL
	ZnF_C2H2	UniProtKB/TrEMBL
Superfamily-SCOP	BTB/POZ_fold	UniProtKB/TrEMBL
	SSF57667	UniProtKB/TrEMBL
UniProt	A0A0G2K2T7	ENTREZGENE
	A0A0G2K420	ENTREZGENE, UniProtKB/TrEMBL
	A0A0G2K6M4	ENTREZGENE, UniProtKB/TrEMBL
	A6IK96	ENTREZGENE, UniProtKB/TrEMBL
	D3ZX15	ENTREZGENE, UniProtKB/TrEMBL
	Q4G032	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-11-27	Patz1	POZ (BTB) and AT hook containing zinc finger 1	Zfp278	zinc finger protein 278	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Zfp278	zinc finger protein 278	Znf278_predicted	zinc finger protein 278 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Znf278_predicted	zinc finger protein 278 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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