Fignl1 (fidgetin-like 1) - Rat Genome Database

Name: Fignl1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Fignl1 (fidgetin-like 1) Rattus norvegicus

Analyze

Symbol:

Fignl1

Name:

fidgetin-like 1

RGD ID:

1307112

Description:

Predicted to have magnesium ion binding activity and microtubule-severing ATPase activity. Predicted to be involved in several processes, including cellular response to ionizing radiation; osteoblast proliferation; and regulation of double-strand break repair via homologous recombination. Predicted to localize to nuclear chromosome and perinuclear region of cytoplasm. Orthologous to human FIGNL1 (fidgetin like 1); INTERACTS WITH 1-naphthyl isothiocyanate; 3,3',4,4',5-pentachlorobiphenyl; acetamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

fidgetin-like protein 1; LOC289777

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FIGNL1 (fidgetin like 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Fignl1 (fidgetin-like 1)	HGNC	Treefam, EggNOG, OrthoMCL, NCBI, OMA, HomoloGene, Inparanoid, Panther, PhylomeDB, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Fignl1 (fidgetin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FIGNL1 (fidgetin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FIGNL1 (fidgetin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fignl1 (fidgetin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FIGNL1 (fidgetin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	FIGNL1 (fidgetin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fignl1 (fidgetin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FIGNL1 (fidgetin like 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Fignl1 (fidgetin-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	fignl1 (fidgetin-like 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Drosophila melanogaster (fruit fly):	Fign	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	SAP1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	figl-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	YTA6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	86,368,670 - 86,381,728 (-)	NCBI
Rnor_6.0 Ensembl	14	91,895,909 - 91,904,433 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	14	91,895,902 - 91,904,474 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	14	91,679,879 - 91,688,446 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	92,685,445 - 92,693,967 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	14	92,704,589 - 92,713,112 (-)	NCBI
Celera	14	85,370,247 - 85,378,768 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Kidney Neoplasms (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-diaminotoluene (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3-methylcholanthrene (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (EXP,ISO)

antirheumatic drug (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

benzo[b]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP)

calcitriol (ISO)

carbon nanotube (ISO)

choline (ISO)

chromium(6+) (ISO)

chrysene (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dibenz[a,h]anthracene (ISO)

dichloroacetic acid (ISO)

dicrotophos (ISO)

dorsomorphin (ISO)

Enterolactone (ISO)

folic acid (ISO)

furan (EXP)

hydrogen peroxide (ISO)

L-methionine (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (ISO)

ozone (ISO)

paracetamol (ISO)

PCB138 (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

propanal (ISO)

quercetin (ISO)

resveratrol (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

tetraphene (ISO)

thapsigargin (ISO)

titanium dioxide (ISO)

trichloroethene (ISO)

trimellitic anhydride (ISO)

tungsten (ISO)

valproic acid (ISO)

zoledronic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ATP metabolic process (ISS)

cellular response to ionizing radiation (ISO,ISS)

cytoplasmic microtubule organization (IBA)

male meiotic nuclear division (ISO,ISS)

microtubule severing (IEA)

negative regulation of apoptotic process (ISO,ISS)

negative regulation of intrinsic apoptotic signaling pathway (ISO)

osteoblast differentiation (ISO,ISS)

osteoblast proliferation (ISO,ISS)

regulation of cell cycle (ISO,ISS)

regulation of double-strand break repair via homologous recombination (ISO,ISS)

Cellular Component

cytoplasm (ISO,ISS)

nuclear chromosome (ISO,ISS)

nucleus (IBA,ISO,ISS)

perinuclear region of cytoplasm (ISO,ISS)

Molecular Function

ATP binding (IEA)

ATPase activity (IBA)

hydrolase activity (ISS)

magnesium ion binding (ISS)

microtubule-severing ATPase activity (IBA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	MGD data from the GO Consortium
3.	RGD automated data pipeline
4.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:16288221	PMID:17352653	PMID:19056867	PMID:20886204	PMID:22110678	PMID:23533145	PMID:23754376

Genomics

Comparative Map Data

Fignl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	86,368,670 - 86,381,728 (-)	NCBI
Rnor_6.0 Ensembl	14	91,895,909 - 91,904,433 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	14	91,895,902 - 91,904,474 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	14	91,679,879 - 91,688,446 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	92,685,445 - 92,693,967 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	14	92,704,589 - 92,713,112 (-)	NCBI
Celera	14	85,370,247 - 85,378,768 (-)	NCBI		Celera
Cytogenetic Map	14	q21	NCBI

FIGNL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	50,444,128 - 50,542,535 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	50,437,320 - 50,450,400 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	50,511,827 - 50,518,088 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
GRCh37	7	50,511,831 - 50,518,048 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	50,479,325 - 50,485,582 (-)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	50,286,040 - 50,292,257	NCBI
Celera	7	50,576,751 - 50,583,008 (-)	NCBI
Cytogenetic Map	7	p12.2	NCBI
HuRef	7	50,361,796 - 50,368,053 (-)	NCBI		HuRef
CHM1_1	7	50,514,119 - 50,520,380 (-)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	50,517,901 - 50,524,158 (-)	NCBI

Fignl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	11	11,750,288 - 11,758,983 (-)	NCBI	GRCm39		mm39
GRCm38	11	11,800,288 - 11,808,983 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	11	11,787,431 - 11,808,962 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	11	11,700,291 - 11,708,965 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	11	11,700,291 - 11,708,935 (-)	NCBI			mm8
Celera	11	12,259,567 - 12,268,241 (-)	NCBI		Celera
Cytogenetic Map	11	A1	NCBI

Fignl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955456	3,588,714 - 3,594,559 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955456	3,588,190 - 3,594,559 (+)	NCBI	ChiLan1.0	ChiLan1.0

FIGNL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	51,330,922 - 51,337,201 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
Mhudiblu_PPA_v0	7	51,080,052 - 51,093,694 (-)	NCBI	Mhudiblu_PPA_v0		panPan3

FIGNL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	18	1,788,801 - 1,790,831 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	18	1,788,063 - 1,792,900 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Fignl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936686	1,412,544 - 1,415,939 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FIGNL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	136,484,216 - 136,488,250 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	136,484,217 - 136,488,262 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	150,064,983 - 150,068,988 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FIGNL1
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	8,351,116 - 8,357,841 (+)	NCBI
ChlSab1.1 Ensembl	21	8,354,641 - 8,356,665 (+)	Ensembl

Fignl1
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624740	3,737,482 - 3,748,851 (+)	NCBI

Position Markers

RH142989

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	91,903,892 - 91,904,081	NCBI	Rnor6.0
Rnor_5.0	14	91,687,867 - 91,688,056	UniSTS	Rnor5.0
RGSC_v3.4	14	92,693,426 - 92,693,615	UniSTS	RGSC3.4
Celera	14	85,378,227 - 85,378,416	UniSTS
RH 3.4 Map	14	635.59	UniSTS
Cytogenetic Map	14	q21	UniSTS

RH143134

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	91,905,999 - 91,906,168	NCBI	Rnor6.0
Rnor_5.0	14	91,689,974 - 91,690,143	UniSTS	Rnor5.0
RGSC_v3.4	14	92,695,533 - 92,695,702	UniSTS	RGSC3.4
Celera	14	85,380,334 - 85,380,503	UniSTS
RH 3.4 Map	14	636.59	UniSTS
Cytogenetic Map	14	q21	UniSTS

UniSTS:236520

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	91,897,340 - 91,897,497	NCBI	Rnor6.0
Rnor_5.0	14	91,681,315 - 91,681,472	UniSTS	Rnor5.0
RGSC_v3.4	14	92,686,874 - 92,687,031	UniSTS	RGSC3.4
Celera	14	85,371,676 - 85,371,833	UniSTS
Cytogenetic Map	14	q21	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	12680424	106641756	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	42442731	108833671	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	43910761	105074364	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	51818462	105074364	Rat
9590294	Uminl4	Urine mineral level QTL 4	5.66	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	14	60980905	105980905	Rat
9589034	Epfw11	Epididymal fat weight QTL 11	6	0.001	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	14	60980905	105980905	Rat
2317879	Alcrsp27	Alcohol response QTL 27	3.3	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	14	61993178	106993178	Rat
634328	Hc5	Hypercalciuria QTL 5	2.3		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	14	63548095	108548095	Rat
1582236	Gluco22	Glucose level QTL 22	3.3	0.0164	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	78172765	102549388	Rat
1582255	Gluco29	Glucose level QTL 29	3.1	0.0025	blood glucose amount (VT:0000188)	absolute change in blood glucose level area under curve (CMO:0002034)	14	78172765	102549388	Rat
1582197	Gluco27	Glucose level QTL 27	3.4	0.0006	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	78172765	102549388	Rat
1582209	Gluco20	Glucose level QTL 20	3.8	0.0005	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	78172765	102549388	Rat
1582250	Gluco26	Glucose level QTL 26	3.3	0.0009	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	78172765	106641756	Rat
2300197	Scl59	Serum cholesterol level QTL 59			blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	78446303	110402569	Rat
1582259	Gluco23	Glucose level QTL 23	3.1	0.0008	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	80049285	115493446	Rat
1641900	Alcrsp11	Alcohol response QTL 11			alcohol metabolism trait (VT:0015089)	blood ethanol level (CMO:0000535)	14	80049285	115493446	Rat
631213	Bw60	Body weight QTL60	4.51		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	14	85307663	106641756	Rat
4889951	Bss92	Bone structure and strength QTL 92	3.9		tibia area (VT:1000281)	tibia-fibula cortical bone total cross-sectional area (CMO:0001721)	14	87458772	106641756	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	66
Count of miRNA genes:	54
Interacting mature miRNAs:	61
Transcripts:	ENSRNOT00000005857
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		26	19	18	4	18			10	12	26
Low	3	13	30	15	15	15	2	2	60	20	15	11	2
Below cutoff		4	8	8		8	6	8	4	3			6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001011913	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251476	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251477	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770261	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091746	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091747	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091748	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039091749	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115644	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY623031	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY623032	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474055	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000254	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000005857 ⟹ ENSRNOP00000005857

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	91,895,909 - 91,904,433 (-)	Ensembl

RefSeq Acc Id:

NM_001011913 ⟹ NP_001011913

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	86,368,677 - 86,377,199 (-)	NCBI
Rnor_6.0	14	91,895,911 - 91,904,433 (-)	NCBI
Rnor_5.0	14	91,679,879 - 91,688,446 (-)	NCBI
RGSC_v3.4	14	92,685,445 - 92,693,967 (-)	RGD
Celera	14	85,370,247 - 85,378,768 (-)	RGD

Sequence:

show sequence

CTTGGAAGGGCGCGCTTTTCGGTGGCTGCTGTCCCGGCAGGGAGCGCAGCTCAACCTGTGCTGA
TCACATCGGGAAGTATTCAGTACCTGGTAAAGTACATGGTGCTTCACGTGGAACTTGGCCTTGA
TTTCTGGCATTGGTCATAATCAGCAGAGTTCTCTCTGTTTTGTCTTGTGTTATAGAGCCTTTGA
CATGGAGACATCCAGCTCCAGGTCTGTGCAGGTGGATGACTGGCAGAAGAATTACTCTGTGGTT
GCATCCAGCATATGTACACCTAAGCAGAAGGCCGATGCATACCGTGCACTGCTACTGCATATTC
AGGATGCATATGCCAACTCCGAGATCTCTCAGGTCTTTGCTACCAACCTGTTTAAGAGGTATAC
AGAGAAATACTCTGCAATTATTGATTCTGACAATGTTGTAACTGGCTTGAATAACTATGCAGAG
AGCATTTTTGCTTTGGCAGGATCTCAACAGGCTGACAGTGACAAGTGGCAATCTGGTTTGTCAA
TAAATAATGTTTTCAAAATGAGTACTGTACAGGAGATGATGCAAGCTGGTCAGAAATTTAAAGA
GTCTCTGTTGGAACCTGCTGATGCATCAGTAGTCATGTGTAAAGAGCCTACCATCTTTGAGGTT
CCTCAACTTGGTGTTTGTGGAGGTTCTGAAGAAGCTGACCTGTTATCCAGTTCAGTTCATGGCA
CAGAAAAGACCCAAGCCATTCCAGGGAACAGTCTGAGATGTTCCCCATTTCAGAGCACTCTGTT
CCCTATGGCAACCAATACTAAGACATGTCTCACCTCCTCAGCACCTTCAGGTGAGTCAACCACT
GCTACATTTCACAGGACACCATTATTTGGAAACACCAAAAAGGAACCTCAAAGCTTTCCGAAAA
CCAGCACAGGACTAAATATGTTCTTATCTAATCCATCTTGTGTTCCTTCTGGCTGTGAAAATCC
TCGAGAAAGGAAGGCTTTTAATGACTCTGACACCATTAACATGCTTTCCAATCCAACACTGAAT
AAAGCTCCTAGTAAAACAGAAGACAGTGGCCAAAGGGAAGATAATAGCCTGCCTACCTTTAAAA
CTGCAAAAGAACAATTATGGGCAGATCAGAAAAAAAGGAGCCATCAATCCCAGCACACCTCTAA
ATCTTTTAACGGTGCTATAAAAAAGTCTCTGGGAGCTGGGAGATCGAGAGGGATATTTGGAAAG
TTTGTTCCTCCTGTATCTAATAAGCAAGATGGAAGTGAGCAGAATGGAAATGTGAAGCCTAAGT
CTAGTAGGGCCGGGTCTGCAGAACCAGCTCACCTCACTGATGATCGCCTAAAGAACGTGGAACC
AAGAATGGTTGAACTTATTATGAATGAAATTATGGACCATGGGCCTCCAGTACATTGGGAAGAC
ATTGCTGGAGTAGAATTTGCCAAAGCTACAATAAAGGAAATTGTTGTGTGGCCCATGATGAGAC
CAGATATCTTTACTGGATTGCGAGGGCCCCCTAAAGGAATTCTGCTCTTTGGCCCTCCAGGAAC
TGGTAAAACTCTGATTGGCAAGTGCATTGCTAGTCAGTCTGGAGCAACATTCTTCAGCATTTCT
GCTTCTTCACTGACTTCTAAGTGGGTAGGTGAGGGAGAAAAAATGGTCCGGGCATTGTTTGCTG
TTGCAAGGTGTCAGCAGCCAGCTGTGATATTTATTGATGAAATTGATTCTTTATTGTCTCAACG
AGGAGATGGTGAACATGAATCTTCAAGAAGGATAAAAACGGAATTTTTAGTTCAGTTAGATGGA
GCAACCACGTCTTCTGAAGACCGTATTCTCGTGGTGGGAGCCACAAATCGGCCCCAAGAGATTG
ATGAAGCTGCCCGGAGAAGATTGGTAAAAAGACTTTATATTCCTCTCCCAGAAGCTTCAGCCAG
GAAACAGATAGTAGTTAATCTCATGTCTAAGGAGCAGTGTTGCCTCACTGATGAAGAAACAGAA
CTGGTAGTGCAGCAGTCTGACGGGTTTTCAGGAGCAGATATGACACAGCTTTGCAGAGAGGCTT
CTCTTGGTCCTATTCGCAGTTTGCACACTGCTGACATCGCTACCATAAGTCCAGATCAAGTTCG
ACCAATAGCTTATATTGATTTTGAAAATGCTTTTAGAACTGTGCGACCTTCTGTGTCTCCAAAA
GACTTAGAGCTTTATGAAAACTGGAATAAAACATTTGGTTGTGGAAAGTGAATACATCGATTGA
AGGCAGAAGCTGCCATCTAACAGTTTGGATAGGAAGCATGAAAGCTTGGGTTGTGCTTCTTGTA
TTGAAGTATATCCTGAATTCTGTGCTGCAGATTAGAATGATAAACTTGACTACGGATTGATATA
TTAGTATGTTGTATTTGTCTTCCAGTTATATGATATATAAGTTCATCTCATTTAAATACAATGA
CCTTTTGTTTCTAAATGAATTCAAATTAGAACTTTAGTCTGGTAATAATAAACTTTGTCAGTGT
AGTATTAATATGGCTTACATTTGAAAGAGCATTGTGTACTTGGTTAGAATGAAAGCAACAGAAA
GTAAACTACATTAACCCGTTCCCGTTTGTAACTTGTTTTGTGGGCTTTTTTCCTATCAAAATTA
ATAAAAACATGGTTAGAAATAGCAAGATATAATTTTGTATCAGGGATGTGGTCTGCCTCAAACA
AAAGACAATTAAGTGTGTTTTTTTCAAGGGATCTGGAAAGTTTTGTGTTACTATTTTATCTAAT
AATACTTTTAAAGCCTATTATCTCACCCTTTTCCAAAACTAAATGTTTTTTAATTGTTGTATTA
TTTTGTTTTGTAAAATCTGTTCGTTGTAGAAACTTAAGACAGAAGCAAAGAGAATAAAAATTGT
TAGTTTTTTAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006251476 ⟹ XP_006251538

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	86,368,670 - 86,381,728 (-)	NCBI
Rnor_6.0	14	91,895,902 - 91,904,474 (-)	NCBI
Rnor_5.0	14	91,679,879 - 91,688,446 (-)	NCBI

Sequence:

show sequence

GTGCGCAACGCGGGCCGAGCGCGTCGCCGCGCGCAGGCGCACTTGGAAGGGCGCGCTTTTCGGT
GGCTGCTGTCCCGGCAGGGAGCGCAGCTCAACCTGTGCTGATCACATCGGGAAGTATTCAGTAC
CTGGTAAAGTACATGGTGCTTCACGTGGAACTTGGCCTTGATTTCTGGCATTGGTCATAATCAG
CAGAGTTCTCTCTGAGCCTTTGACATGGAGACATCCAGCTCCAGGTCTGTGCAGGTGGATGACT
GGCAGAAGAATTACTCTGTGGTTGCATCCAGCATATGTACACCTAAGCAGAAGGCCGATGCATA
CCGTGCACTGCTACTGCATATTCAGGATGCATATGCCAACTCCGAGATCTCTCAGGTCTTTGCT
ACCAACCTGTTTAAGAGGTATACAGAGAAATACTCTGCAATTATTGATTCTGACAATGTTGTAA
CTGGCTTGAATAACTATGCAGAGAGCATTTTTGCTTTGGCAGGATCTCAACAGGCTGACAGTGA
CAAGTGGCAATCTGGTTTGTCAATAAATAATGTTTTCAAAATGAGTACTGTACAGGAGATGATG
CAAGCTGGTCAGAAATTTAAAGAGTCTCTGTTGGAACCTGCTGATGCATCAGTAGTCATGTGTA
AAGAGCCTACCATCTTTGAGGTTCCTCAACTTGGTGTTTGTGGAGGTTCTGAAGAAGCTGACCT
GTTATCCAGTTCAGTTCATGGCACAGAAAAGACCCAAGCCATTCCAGGGAACAGTCTGAGATGT
TCCCCATTTCAGAGCACTCTGTTCCCTATGGCAACCAATACTAAGACATGTCTCACCTCCTCAG
CACCTTCAGGTGAGTCAACCACTGCTACATTTCACAGGACACCATTATTTGGAAACACCAAAAA
GGAACCTCAAAGCTTTCCGAAAACCAGCACAGGACTAAATATGTTCTTATCTAATCCATCTTGT
GTTCCTTCTGGCTGTGAAAATCCTCGAGAAAGGAAGGCTTTTAATGACTCTGACACCATTAACA
TGCTTTCCAATCCAACACTGAATAAAGCTCCTAGTAAAACAGAAGACAGTGGCCAAAGGGAAGA
TAATAGCCTGCCTACCTTTAAAACTGCAAAAGAACAATTATGGGCAGATCAGAAAAAAAGGAGC
CATCAATCCCAGCACACCTCTAAATCTTTTAACGGTGCTATAAAAAAGTCTCTGGGAGCTGGGA
GATCGAGAGGGATATTTGGAAAGTTTGTTCCTCCTGTATCTAATAAGCAAGATGGAAGTGAGCA
GAATGGAAATGTGAAGCCTAAGTCTAGTAGGGCCGGGTCTGCAGAACCAGCTCACCTCACTGAT
GATCGCCTAAAGAACGTGGAACCAAGAATGGTTGAACTTATTATGAATGAAATTATGGACCATG
GGCCTCCAGTACATTGGGAAGACATTGCTGGAGTAGAATTTGCCAAAGCTACAATAAAGGAAAT
TGTTGTGTGGCCCATGATGAGACCAGATATCTTTACTGGATTGCGAGGGCCCCCTAAAGGAATT
CTGCTCTTTGGCCCTCCAGGAACTGGTAAAACTCTGATTGGCAAGTGCATTGCTAGTCAGTCTG
GAGCAACATTCTTCAGCATTTCTGCTTCTTCACTGACTTCTAAGTGGGTAGGTGAGGGAGAAAA
AATGGTCCGGGCATTGTTTGCTGTTGCAAGGTGTCAGCAGCCAGCTGTGATATTTATTGATGAA
ATTGATTCTTTATTGTCTCAACGAGGAGATGGTGAACATGAATCTTCAAGAAGGATAAAAACGG
AATTTTTAGTTCAGTTAGATGGAGCAACCACGTCTTCTGAAGACCGTATTCTCGTGGTGGGAGC
CACAAATCGGCCCCAAGAGATTGATGAAGCTGCCCGGAGAAGATTGGTAAAAAGACTTTATATT
CCTCTCCCAGAAGCTTCAGCCAGGAAACAGATAGTAGTTAATCTCATGTCTAAGGAGCAGTGTT
GCCTCACTGATGAAGAAACAGAACTGGTAGTGCAGCAGTCTGACGGGTTTTCAGGAGCAGATAT
GACACAGCTTTGCAGAGAGGCTTCTCTTGGTCCTATTCGCAGTTTGCACACTGCTGACATCGCT
ACCATAAGTCCAGATCAAGTTCGACCAATAGCTTATATTGATTTTGAAAATGCTTTTAGAACTG
TGCGACCTTCTGTGTCTCCAAAAGACTTAGAGCTTTATGAAAACTGGAATAAAACATTTGGTTG
TGGAAAGTGAATACATCGATTGAAGGCAGAAGCTGCCATCTAACAGTTTGGATAGGAAGCATGA
AAGCTTGGGTTGTGCTTCTTGTATTGAAGTATATCCTGAATTCTGTGCTGCAGATTAGAATGAT
AAACTTGACTACGGATTGATATATTAGTATGTTGTATTTGTCTTCCAGTTATATGATATATAAG
TTCATCTCATTTAAATACAATGACCTTTTGTTTCTAAATGAATTCAAATTAGAACTTTAGTCTG
GTAATAATAAACTTTGTCAGTGTAGTATTAATATGGCTTACATTTGAAAGAGCATTGTGTACTT
GGTTAGAATGAAAGCAACAGAAAGTAAACTACATTAACCCGTTCCCGTTTGTAACTTGTTTTGT
GGGCTTTTTTCCTATCAAAATTAATAAAAACATGGTTAGAAATAGCAAGATATAATTTTGTATC
AGGGATGTGGTCTGCCTCAAACAAAAGACAATTAAGTGTGTTTTTTTCAAGGGATCTGGAAAGT
TTTGTGTTACTATTTTATCTAATAATACTTTTAAAGCCTATTATCTCACCCTTTTCCAAAACTA
AATGTTTTTTAATTGTTGTATTATTTTGTTTTGTAAAATCTGTTCGTTGTAGAAACTTAAGACA
GAAGCAAAGAGAATAAAAATTGTTAGTTTTTTACCACTTTGA

hide sequence

RefSeq Acc Id:

XM_006251477 ⟹ XP_006251539

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	86,368,671 - 86,381,728 (-)	NCBI
Rnor_6.0	14	91,895,902 - 91,904,357 (-)	NCBI
Rnor_5.0	14	91,679,879 - 91,688,446 (-)	NCBI

Sequence:

show sequence

GCTAGGCCGGCGGGTCTAGGCTGTGGTCGCCACGCCGGGCGTTTTCTTTGGTTTTGTTTTGTTC
TGTCAGTTCTTAGACTCGGGTTGTCCGAGAGGGTGGCCTTGGGAAGCCCGCGGTGAGGCTCTGC
CTCTCGGCGGCGGCTGGGGTTAAGGGACGGCCTTTGGGCGTGACGGTCGGTCAGCCGCAGCTTA
CCTCCCGCTAGGAGTGTTGGGAAGGCTGGAGCAGGTTTGCCACCTAAACGTACGCATTTTGAGT
ATCGTGCTTTCGGCAATACTAGCAGCTCAACCTGTGCTGATCACATCGGGAAGTATTCAGTACC
TGGTAAAGTACATGGTGCTTCACGTGGAACTTGGCCTTGATTTCTGGCATTGGTCATAATCAGC
AGAGTTCTCTCTGTTTTGTCTTGTGTTATAGAGCCTTTGACATGGAGACATCCAGCTCCAGGTC
TGTGCAGGTGGATGACTGGCAGAAGAATTACTCTGTGGTTGCATCCAGCATATGTACACCTAAG
CAGAAGGCCGATGCATACCGTGCACTGCTACTGCATATTCAGGATGCATATGCCAACTCCGAGA
TCTCTCAGGTCTTTGCTACCAACCTGTTTAAGAGGTATACAGAGAAATACTCTGCAATTATTGA
TTCTGACAATGTTGTAACTGGCTTGAATAACTATGCAGAGAGCATTTTTGCTTTGGCAGGATCT
CAACAGGCTGACAGTGACAAGTGGCAATCTGGTTTGTCAATAAATAATGTTTTCAAAATGAGTA
CTGTACAGGAGATGATGCAAGCTGGTCAGAAATTTAAAGAGTCTCTGTTGGAACCTGCTGATGC
ATCAGTAGTCATGTGTAAAGAGCCTACCATCTTTGAGGTTCCTCAACTTGGTGTTTGTGGAGGT
TCTGAAGAAGCTGACCTGTTATCCAGTTCAGTTCATGGCACAGAAAAGACCCAAGCCATTCCAG
GGAACAGTCTGAGATGTTCCCCATTTCAGAGCACTCTGTTCCCTATGGCAACCAATACTAAGAC
ATGTCTCACCTCCTCAGCACCTTCAGGTGAGTCAACCACTGCTACATTTCACAGGACACCATTA
TTTGGAAACACCAAAAAGGAACCTCAAAGCTTTCCGAAAACCAGCACAGGACTAAATATGTTCT
TATCTAATCCATCTTGTGTTCCTTCTGGCTGTGAAAATCCTCGAGAAAGGAAGGCTTTTAATGA
CTCTGACACCATTAACATGCTTTCCAATCCAACACTGAATAAAGCTCCTAGTAAAACAGAAGAC
AGTGGCCAAAGGGAAGATAATAGCCTGCCTACCTTTAAAACTGCAAAAGAACAATTATGGGCAG
ATCAGAAAAAAAGGAGCCATCAATCCCAGCACACCTCTAAATCTTTTAACGGTGCTATAAAAAA
GTCTCTGGGAGCTGGGAGATCGAGAGGGATATTTGGAAAGTTTGTTCCTCCTGTATCTAATAAG
CAAGATGGAAGTGAGCAGAATGGAAATGTGAAGCCTAAGTCTAGTAGGGCCGGGTCTGCAGAAC
CAGCTCACCTCACTGATGATCGCCTAAAGAACGTGGAACCAAGAATGGTTGAACTTATTATGAA
TGAAATTATGGACCATGGGCCTCCAGTACATTGGGAAGACATTGCTGGAGTAGAATTTGCCAAA
GCTACAATAAAGGAAATTGTTGTGTGGCCCATGATGAGACCAGATATCTTTACTGGATTGCGAG
GGCCCCCTAAAGGAATTCTGCTCTTTGGCCCTCCAGGAACTGGTAAAACTCTGATTGGCAAGTG
CATTGCTAGTCAGTCTGGAGCAACATTCTTCAGCATTTCTGCTTCTTCACTGACTTCTAAGTGG
GTAGGTGAGGGAGAAAAAATGGTCCGGGCATTGTTTGCTGTTGCAAGGTGTCAGCAGCCAGCTG
TGATATTTATTGATGAAATTGATTCTTTATTGTCTCAACGAGGAGATGGTGAACATGAATCTTC
AAGAAGGATAAAAACGGAATTTTTAGTTCAGTTAGATGGAGCAACCACGTCTTCTGAAGACCGT
ATTCTCGTGGTGGGAGCCACAAATCGGCCCCAAGAGATTGATGAAGCTGCCCGGAGAAGATTGG
TAAAAAGACTTTATATTCCTCTCCCAGAAGCTTCAGCCAGGAAACAGATAGTAGTTAATCTCAT
GTCTAAGGAGCAGTGTTGCCTCACTGATGAAGAAACAGAACTGGTAGTGCAGCAGTCTGACGGG
TTTTCAGGAGCAGATATGACACAGCTTTGCAGAGAGGCTTCTCTTGGTCCTATTCGCAGTTTGC
ACACTGCTGACATCGCTACCATAAGTCCAGATCAAGTTCGACCAATAGCTTATATTGATTTTGA
AAATGCTTTTAGAACTGTGCGACCTTCTGTGTCTCCAAAAGACTTAGAGCTTTATGAAAACTGG
AATAAAACATTTGGTTGTGGAAAGTGAATACATCGATTGAAGGCAGAAGCTGCCATCTAACAGT
TTGGATAGGAAGCATGAAAGCTTGGGTTGTGCTTCTTGTATTGAAGTATATCCTGAATTCTGTG
CTGCAGATTAGAATGATAAACTTGACTACGGATTGATATATTAGTATGTTGTATTTGTCTTCCA
GTTATATGATATATAAGTTCATCTCATTTAAATACAATGACCTTTTGTTTCTAAATGAATTCAA
ATTAGAACTTTAGTCTGGTAATAATAAACTTTGTCAGTGTAGTATTAATATGGCTTACATTTGA
AAGAGCATTGTGTACTTGGTTAGAATGAAAGCAACAGAAAGTAAACTACATTAACCCGTTCCCG
TTTGTAACTTGTTTTGTGGGCTTTTTTCCTATCAAAATTAATAAAAACATGGTTAGAAATAGCA
AGATATAATTTTGTATCAGGGATGTGGTCTGCCTCAAACAAAAGACAATTAAGTGTGTTTTTTT
CAAGGGATCTGGAAAGTTTTGTGTTACTATTTTATCTAATAATACTTTTAAAGCCTATTATCTC
ACCCTTTTCCAAAACTAAATGTTTTTTAATTGTTGTATTATTTTGTTTTGTAAAATCTGTTCGT
TGTAGAAACTTAAGACAGAAGCAAAGAGAATAAAAATTGTTAGTTTTTTACCACTTTGA

hide sequence

RefSeq Acc Id:

XM_008770261 ⟹ XP_008768483

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	86,368,671 - 86,381,728 (-)	NCBI
Rnor_6.0	14	91,895,902 - 91,904,464 (-)	NCBI

Sequence:

show sequence

CGGGCCGAGCGCGTCGCCGCGCGCAGGCGCACTTGGAAGGGCGCGCTTTTCGGTGGCTGCTGTC
CCGGCAGGGAGCGCAGGTGGGCGCCGCTCAACCTGTGCTGATCACATCGGGAAGTATTCAGTAC
CTGGTAAAGTACATGGTGCTTCACGTGGAACTTGGCCTTGATTTCTGGCATTGGTCATAATCAG
CAGAGTTCTCTCTGTTTTGTCTTGTGTTATAGAGCCTTTGACATGGAGACATCCAGCTCCAGGT
CTGTGCAGGTGGATGACTGGCAGAAGAATTACTCTGTGGTTGCATCCAGCATATGTACACCTAA
GCAGAAGGCCGATGCATACCGTGCACTGCTACTGCATATTCAGGATGCATATGCCAACTCCGAG
ATCTCTCAGGTCTTTGCTACCAACCTGTTTAAGAGGTATACAGAGAAATACTCTGCAATTATTG
ATTCTGACAATGTTGTAACTGGCTTGAATAACTATGCAGAGAGCATTTTTGCTTTGGCAGGATC
TCAACAGGCTGACAGTGACAAGTGGCAATCTGGTTTGTCAATAAATAATGTTTTCAAAATGAGT
ACTGTACAGGAGATGATGCAAGCTGGTCAGAAATTTAAAGAGTCTCTGTTGGAACCTGCTGATG
CATCAGTAGTCATGTGTAAAGAGCCTACCATCTTTGAGGTTCCTCAACTTGGTGTTTGTGGAGG
TTCTGAAGAAGCTGACCTGTTATCCAGTTCAGTTCATGGCACAGAAAAGACCCAAGCCATTCCA
GGGAACAGTCTGAGATGTTCCCCATTTCAGAGCACTCTGTTCCCTATGGCAACCAATACTAAGA
CATGTCTCACCTCCTCAGCACCTTCAGGTGAGTCAACCACTGCTACATTTCACAGGACACCATT
ATTTGGAAACACCAAAAAGGAACCTCAAAGCTTTCCGAAAACCAGCACAGGACTAAATATGTTC
TTATCTAATCCATCTTGTGTTCCTTCTGGCTGTGAAAATCCTCGAGAAAGGAAGGCTTTTAATG
ACTCTGACACCATTAACATGCTTTCCAATCCAACACTGAATAAAGCTCCTAGTAAAACAGAAGA
CAGTGGCCAAAGGGAAGATAATAGCCTGCCTACCTTTAAAACTGCAAAAGAACAATTATGGGCA
GATCAGAAAAAAAGGAGCCATCAATCCCAGCACACCTCTAAATCTTTTAACGGTGCTATAAAAA
AGTCTCTGGGAGCTGGGAGATCGAGAGGGATATTTGGAAAGTTTGTTCCTCCTGTATCTAATAA
GCAAGATGGAAGTGAGCAGAATGGAAATGTGAAGCCTAAGTCTAGTAGGGCCGGGTCTGCAGAA
CCAGCTCACCTCACTGATGATCGCCTAAAGAACGTGGAACCAAGAATGGTTGAACTTATTATGA
ATGAAATTATGGACCATGGGCCTCCAGTACATTGGGAAGACATTGCTGGAGTAGAATTTGCCAA
AGCTACAATAAAGGAAATTGTTGTGTGGCCCATGATGAGACCAGATATCTTTACTGGATTGCGA
GGGCCCCCTAAAGGAATTCTGCTCTTTGGCCCTCCAGGAACTGGTAAAACTCTGATTGGCAAGT
GCATTGCTAGTCAGTCTGGAGCAACATTCTTCAGCATTTCTGCTTCTTCACTGACTTCTAAGTG
GGTAGGTGAGGGAGAAAAAATGGTCCGGGCATTGTTTGCTGTTGCAAGGTGTCAGCAGCCAGCT
GTGATATTTATTGATGAAATTGATTCTTTATTGTCTCAACGAGGAGATGGTGAACATGAATCTT
CAAGAAGGATAAAAACGGAATTTTTAGTTCAGTTAGATGGAGCAACCACGTCTTCTGAAGACCG
TATTCTCGTGGTGGGAGCCACAAATCGGCCCCAAGAGATTGATGAAGCTGCCCGGAGAAGATTG
GTAAAAAGACTTTATATTCCTCTCCCAGAAGCTTCAGCCAGGAAACAGATAGTAGTTAATCTCA
TGTCTAAGGAGCAGTGTTGCCTCACTGATGAAGAAACAGAACTGGTAGTGCAGCAGTCTGACGG
GTTTTCAGGAGCAGATATGACACAGCTTTGCAGAGAGGCTTCTCTTGGTCCTATTCGCAGTTTG
CACACTGCTGACATCGCTACCATAAGTCCAGATCAAGTTCGACCAATAGCTTATATTGATTTTG
AAAATGCTTTTAGAACTGTGCGACCTTCTGTGTCTCCAAAAGACTTAGAGCTTTATGAAAACTG
GAATAAAACATTTGGTTGTGGAAAGTGAATACATCGATTGAAGGCAGAAGCTGCCATCTAACAG
TTTGGATAGGAAGCATGAAAGCTTGGGTTGTGCTTCTTGTATTGAAGTATATCCTGAATTCTGT
GCTGCAGATTAGAATGATAAACTTGACTACGGATTGATATATTAGTATGTTGTATTTGTCTTCC
AGTTATATGATATATAAGTTCATCTCATTTAAATACAATGACCTTTTGTTTCTAAATGAATTCA
AATTAGAACTTTAGTCTGGTAATAATAAACTTTGTCAGTGTAGTATTAATATGGCTTACATTTG
AAAGAGCATTGTGTACTTGGTTAGAATGAAAGCAACAGAAAGTAAACTACATTAACCCGTTCCC
GTTTGTAACTTGTTTTGTGGGCTTTTTTCCTATCAAAATTAATAAAAACATGGTTAGAAATAGC
AAGATATAATTTTGTATCAGGGATGTGGTCTGCCTCAAACAAAAGACAATTAAGTGTGTTTTTT
TCAAGGGATCTGGAAAGTTTTGTGTTACTATTTTATCTAATAATACTTTTAAAGCCTATTATCT
CACCCTTTTCCAAAACTAAATGTTTTTTAATTGTTGTATTATTTTGTTTTGTAAAATCTGTTCG
TTGTAGAAACTTAAGACAGAAGCAAAGAGAATAAAAATTGTTAGTTTTTTACCACTTTGA

hide sequence

RefSeq Acc Id:

XM_039091746 ⟹ XP_038947674

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	86,368,671 - 86,381,728 (-)	NCBI

RefSeq Acc Id:

XM_039091747 ⟹ XP_038947675

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	86,368,671 - 86,381,728 (-)	NCBI

RefSeq Acc Id:

XM_039091748 ⟹ XP_038947676

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	86,368,671 - 86,381,728 (-)	NCBI

RefSeq Acc Id:

XM_039091749 ⟹ XP_038947677

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	86,368,671 - 86,381,728 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001011913	(Get FASTA)	NCBI Sequence Viewer
	XP_006251538	(Get FASTA)	NCBI Sequence Viewer
	XP_006251539	(Get FASTA)	NCBI Sequence Viewer
	XP_008768483	(Get FASTA)	NCBI Sequence Viewer
	XP_038947674	(Get FASTA)	NCBI Sequence Viewer
	XP_038947675	(Get FASTA)	NCBI Sequence Viewer
	XP_038947676	(Get FASTA)	NCBI Sequence Viewer
	XP_038947677	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAT46048	(Get FASTA)	NCBI Sequence Viewer
	AAT46049	(Get FASTA)	NCBI Sequence Viewer
	EDL76063	(Get FASTA)	NCBI Sequence Viewer
	Q6GX84	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_001011913 ⟸ NM_001011913

- UniProtKB:

Q6GX84 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

METSSSRSVQVDDWQKNYSVVASSICTPKQKADAYRALLLHIQDAYANSEISQVFATNLFKRYT
EKYSAIIDSDNVVTGLNNYAESIFALAGSQQADSDKWQSGLSINNVFKMSTVQEMMQAGQKFKE
SLLEPADASVVMCKEPTIFEVPQLGVCGGSEEADLLSSSVHGTEKTQAIPGNSLRCSPFQSTLF
PMATNTKTCLTSSAPSGESTTATFHRTPLFGNTKKEPQSFPKTSTGLNMFLSNPSCVPSGCENP
RERKAFNDSDTINMLSNPTLNKAPSKTEDSGQREDNSLPTFKTAKEQLWADQKKRSHQSQHTSK
SFNGAIKKSLGAGRSRGIFGKFVPPVSNKQDGSEQNGNVKPKSSRAGSAEPAHLTDDRLKNVEP
RMVELIMNEIMDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGT
GKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR
GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASAR
KQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIRSLHTADIATISPDQVR
PIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCGK

hide sequence

RefSeq Acc Id:	XP_006251538 ⟸ XM_006251476
- Peptide Label:	isoform X1
- UniProtKB:	Q6GX84 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence METSSSRSVQVDDWQKNYSVVASSICTPKQKADAYRALLLHIQDAYANSEISQVFATNLFKRYT EKYSAIIDSDNVVTGLNNYAESIFALAGSQQADSDKWQSGLSINNVFKMSTVQEMMQAGQKFKE SLLEPADASVVMCKEPTIFEVPQLGVCGGSEEADLLSSSVHGTEKTQAIPGNSLRCSPFQSTLF PMATNTKTCLTSSAPSGESTTATFHRTPLFGNTKKEPQSFPKTSTGLNMFLSNPSCVPSGCENP RERKAFNDSDTINMLSNPTLNKAPSKTEDSGQREDNSLPTFKTAKEQLWADQKKRSHQSQHTSK SFNGAIKKSLGAGRSRGIFGKFVPPVSNKQDGSEQNGNVKPKSSRAGSAEPAHLTDDRLKNVEP RMVELIMNEIMDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGT GKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASAR KQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIRSLHTADIATISPDQVR PIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCGK hide sequence

RefSeq Acc Id:	XP_006251539 ⟸ XM_006251477
- Peptide Label:	isoform X1
- UniProtKB:	Q6GX84 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence METSSSRSVQVDDWQKNYSVVASSICTPKQKADAYRALLLHIQDAYANSEISQVFATNLFKRYT EKYSAIIDSDNVVTGLNNYAESIFALAGSQQADSDKWQSGLSINNVFKMSTVQEMMQAGQKFKE SLLEPADASVVMCKEPTIFEVPQLGVCGGSEEADLLSSSVHGTEKTQAIPGNSLRCSPFQSTLF PMATNTKTCLTSSAPSGESTTATFHRTPLFGNTKKEPQSFPKTSTGLNMFLSNPSCVPSGCENP RERKAFNDSDTINMLSNPTLNKAPSKTEDSGQREDNSLPTFKTAKEQLWADQKKRSHQSQHTSK SFNGAIKKSLGAGRSRGIFGKFVPPVSNKQDGSEQNGNVKPKSSRAGSAEPAHLTDDRLKNVEP RMVELIMNEIMDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGT GKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASAR KQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIRSLHTADIATISPDQVR PIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCGK hide sequence

RefSeq Acc Id:	XP_008768483 ⟸ XM_008770261
- Peptide Label:	isoform X1
- UniProtKB:	Q6GX84 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence METSSSRSVQVDDWQKNYSVVASSICTPKQKADAYRALLLHIQDAYANSEISQVFATNLFKRYT EKYSAIIDSDNVVTGLNNYAESIFALAGSQQADSDKWQSGLSINNVFKMSTVQEMMQAGQKFKE SLLEPADASVVMCKEPTIFEVPQLGVCGGSEEADLLSSSVHGTEKTQAIPGNSLRCSPFQSTLF PMATNTKTCLTSSAPSGESTTATFHRTPLFGNTKKEPQSFPKTSTGLNMFLSNPSCVPSGCENP RERKAFNDSDTINMLSNPTLNKAPSKTEDSGQREDNSLPTFKTAKEQLWADQKKRSHQSQHTSK SFNGAIKKSLGAGRSRGIFGKFVPPVSNKQDGSEQNGNVKPKSSRAGSAEPAHLTDDRLKNVEP RMVELIMNEIMDHGPPVHWEDIAGVEFAKATIKEIVVWPMMRPDIFTGLRGPPKGILLFGPPGT GKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQR GDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASAR KQIVVNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASLGPIRSLHTADIATISPDQVR PIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCGK hide sequence

RefSeq Acc Id:

ENSRNOP00000005857 ⟸ ENSRNOT00000005857

RefSeq Acc Id:	XP_038947677 ⟸ XM_039091749
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038947676 ⟸ XM_039091748
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038947675 ⟸ XM_039091747
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038947674 ⟸ XM_039091746
- Peptide Label:	isoform X1

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699495

Promoter ID:

EPDNEW_R10017

Type:

single initiation site

Name:

Fignl1_1

Description:

fidgetin-like 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	91,904,422 - 91,904,482	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1307112	AgrOrtholog
Ensembl Genes	ENSRNOG00000004440	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Protein	ENSRNOP00000005857	ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000005857	ENTREZGENE, UniProtKB/Swiss-Prot
InterPro	AAA+_ATPase	UniProtKB/Swiss-Prot
	ATPase_AAA_core	UniProtKB/Swiss-Prot
	ATPase_AAA_CS	UniProtKB/Swiss-Prot
	P-loop_NTPase	UniProtKB/Swiss-Prot
	Vps4_C	UniProtKB/Swiss-Prot
KEGG Report	rno:289777	UniProtKB/Swiss-Prot
NCBI Gene	289777	ENTREZGENE
Pfam	AAA	UniProtKB/Swiss-Prot
	Vps4_C	UniProtKB/Swiss-Prot
PhenoGen	Fignl1	PhenoGen
PROSITE	AAA	UniProtKB/Swiss-Prot
SMART	AAA	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF52540	UniProtKB/Swiss-Prot
UniProt	FIGL1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-12-06	Fignl1	fidgetin-like 1	Fignl1_predicted	fidgetin-like 1 (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Fignl1_predicted	fidgetin-like 1 (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD