Coatc15 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Coatc15 (Coat color QTL 15) Rattus norvegicus

Symbol: Coatc15
Name: Coat color QTL 15
RGD ID: 10755459
Trait: coat/hair pigmentation trait   (VT:0010463)    
Measurement Type: pigmented ventral coat/hair area to total ventral coat/hair area ratio   (CMO:0001812)    
LOD Score: LRS=8.2
P Value: 0.01681
Variance: 5.0
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21419,836,944 - 64,836,944RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01421,457,565 - 66,457,565RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01421,276,795 - 66,276,795RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41422,520,291 - 67,520,291RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: AR-Ednrbsl/Hkv LEH/Hkv 



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Vertebrate Trait

Rat Strain
AR-Ednrbsl/Hkv  (IEA)
LEH/Hkv  (IEA)

References

References - curated
# Reference Title Reference Citation
1. QTL analysis of modifiers for pigmentary disorder in rats carrying Ednrb(sl) mutations. Huang J, etal., Sci Rep. 2016 Jan 22;6:19697. doi: 10.1038/srep19697.
Related QTLs

Related QTL Description Reference
Coatc10 interacts with RGD:10755346


Region

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
Position Markers

Peak: (D14Mit4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21442,336,881 - 42,337,007 (+)MAPPER
Rnor_6.01443,957,503 - 43,957,628NCBI
Rnor_5.01443,776,512 - 43,776,637UniSTS
Rnor_5.01443,776,512 - 43,777,078UniSTS
RGSC_v3.41445,020,228 - 45,020,354RGD
RGSC_v3.41445,020,229 - 45,020,354UniSTS
RGSC_v3.11444,925,389 - 44,925,828RGD
Celera1441,490,248 - 41,490,386UniSTS
RH 2.0 Map14466.1RGD
FHH x ACI Map1439.47RGD
Cytogenetic Map14p11UniSTS


Additional Information

RGD Curation Notes
Note Type Note Reference
qtl_general software used: Map Maker QTXb20 10755346
qtl_general number of animals used: 149 F2 animals 10755346
qtl_general measurement method: Dorsal and ventral sides were photographed and pigmented and non-pigmented areas traced manually; percentage of pigmented area calculated (pigmented area/total area X 100) for dorsal, ventral and total body surface 10755346