Coatc15 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Coatc15 (Coat color QTL 15) Rattus norvegicus

Symbol: Coatc15
Name: Coat color QTL 15
RGD ID: 10755459
Trait: coat/hair pigmentation trait   (VT:0010463)    
Measurement Type: pigmented ventral coat/hair area to total ventral coat/hair area ratio   (CMO:0001812)    
LOD Score: LRS=8.2
P Value: 0.01681
Variance: 5.0
Inheritance Type: additive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21419,836,944 - 64,836,944RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01421,457,565 - 66,457,565RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01421,276,795 - 66,276,795RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.41422,520,291 - 67,520,291RGD_MAPPER_PIPELINERGSC3.4
Cross Type: intercross
Strains Crossed: AR-Ednrbsl/Hkv LEH/Hkv 




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Coatc15Ratpigmentation disease  IAGP 10755346 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Coatc15Ratabnormal coat/hair pigmentation  IDA 10755346 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Coatc15Ratpigmented ventral coat/hair area to total ventral coat/hair area ratio  IDA 10755346 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Coatc15Ratcontrol condition  IDA 10755346 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Coatc15Ratin vivo photography with digital image analysis  IDA 10755346 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Coatc15RatAR-Ednrbsl/Hkv  IEA 10755346 RGD 
Coatc15RatLEH/Hkv  IEA 10755346 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Coatc15Ratcoat/hair pigmentation trait  IDA 10755346 RGD 


#
Reference Title
Reference Citation
1. QTL analysis of modifiers for pigmentary disorder in rats carrying Ednrb(sl) mutations. Huang J, etal., Sci Rep. 2016 Jan 22;6:19697. doi: 10.1038/srep19697.

Related QTL Description Reference
Coatc10 interacts with RGD:10755346



1 to 20 of 380 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
41041616LOC120096859U4 spliceosomal RNA141985066119850849Rat
3954Vcsa2variable coding sequence A2141985123219857697Rat
11434380LOC108352824SMR1 protein-like141990080819909091Rat
1563299Smr3asubmaxillary gland androgen regulated protein 3A142005377920059568Rat
1597129Ppid-ps14peptidylprolyl isomerase D, pseudogene 14142009065620093812Rat
620592Cabs1calcium binding protein, spermatid associated 1142009696220099024Rat
41256287LOC120096584uncharacterized LOC120096584142013075920172275Rat
61990Csn3casein kappa142015403220160585Rat
1359468Fdcspfollicular dendritic cell secreted protein142016969120173983Rat
1561883Odamodontogenic, ameloblast associated142019328620202517Rat
11446409LOC108352727uncharacterized LOC108352727142019566120214723Rat
1309071Dzip1-ps1DAZ interacting protein 1, pseudogene 1142022723420229292Rat
1310384Prr27proline rich 27142023275720248617Rat
628794Csn1s2bcasein alpha s2-like B142025025720266377Rat
621152Csn1s2acasein alpha s2-like A142028116720295232Rat
1589974Stathstatherin142030732420311182Rat
61981Csn2casein beta142032258120329818Rat
2430Csn1s1casein alpha s1142034362020359614Rat
1562394Rpl30-ps7ribosomal protein L30, pseudogene 7142038186220382205Rat
41273802LOC120096585uncharacterized LOC120096585142040441720406946Rat

1 to 20 of 380 rows
1 to 20 of 458 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
11030D14Mit4139144233688142337007Ratregion
33818D14Mit9242144187344441873686Ratregion
33989D14Mit13147144782261847822765Ratregion
34045D14Mit8145145276462552764770Ratregion
34102D14Mgh5174144187102241871196Ratregion
34214D14Mgh6145144165819041658327Ratregion
11482D14Wox13194141984803919848270Ratregion
11482D14Wox13194141985881119859012Ratregion
11483D14Wox17141985879219859003Ratregion
33692D14Mit12138143766971937669857Ratregion
33772D14Mit395143333435333334448Ratregion
36287D14Rat12169143915358139153750Ratregion
37230D14Rat64207146361897163619178Ratregion
37328D14Rat61238146448149264481734Ratregion
37426D14Rat62221146381613763816358Ratregion
35202D14Rat24102144246809742468199Ratregion
35319D14Rat16169144226252942262698Ratregion
35342D14Rat8124143032009230320216Ratregion
35465D14Rat13125143258323832583345Ratregion
36998D14Rat17164145491852854918692Ratregion
1 to 20 of 458 rows

Peak: (D14Mit4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21442,336,881 - 42,337,007 (+)MAPPER
Rnor_6.01443,957,503 - 43,957,628NCBI
Rnor_5.01443,776,512 - 43,776,637UniSTS
Rnor_5.01443,776,512 - 43,777,078UniSTS
RGSC_v3.41445,020,228 - 45,020,354RGD
RGSC_v3.41445,020,229 - 45,020,354UniSTS
RGSC_v3.11444,925,389 - 44,925,828RGD
Celera1441,490,248 - 41,490,386UniSTS
RH 2.0 Map14466.1RGD
FHH x ACI Map1439.47RGD
Cytogenetic Map14p11UniSTS


1 to 10 of 38 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat

1 to 10 of 38 rows


Note Type Note Reference
qtl_general software used: Map Maker QTXb20 10755346
qtl_general number of animals used: 149 F2 animals 10755346
qtl_general measurement method: Dorsal and ventral sides were photographed and pigmented and non-pigmented areas traced manually; percentage of pigmented area calculated (pigmented area/total area X 100) for dorsal, ventral and total body surface 10755346