Exoc1 (exocyst complex component 1) - Rat Genome Database

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Gene: Exoc1 (exocyst complex component 1) Rattus norvegicus
Analyze
Symbol: Exoc1
Name: exocyst complex component 1
RGD ID: 1304939
Description: Predicted to enable phosphatidylinositol-4,5-bisphosphate binding activity. Predicted to be involved in several processes, including Golgi to plasma membrane transport; phosphatidylinositol-mediated signaling; and positive regulation of protein secretion. Predicted to act upstream of or within embryo implantation. Predicted to be located in cytoplasm and cytoplasmic side of apical plasma membrane. Predicted to be part of exocyst. Predicted to be active in plasma membrane. Orthologous to human EXOC1 (exocyst complex component 1); PARTICIPATES IN insulin signaling pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,6-dinitrotoluene; 2-methoxyethanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC305287; SEC3-like 1; SEC3-like 1 (S. cerevisiae); Sec3l1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21431,611,536 - 31,659,920 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1431,611,547 - 31,659,914 (-)Ensembl
Rnor_6.01434,132,210 - 34,192,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1434,132,221 - 34,177,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,923,763 - 33,958,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,895,938 - 33,933,231 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11433,895,939 - 33,933,231 (-)NCBI
Celera1430,939,904 - 30,973,166 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19946888   PMID:25591774  


Genomics

Comparative Map Data
Exoc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21431,611,536 - 31,659,920 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1431,611,547 - 31,659,914 (-)Ensembl
Rnor_6.01434,132,210 - 34,192,296 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1434,132,221 - 34,177,515 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01433,923,763 - 33,958,422 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41433,895,938 - 33,933,231 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11433,895,939 - 33,933,231 (-)NCBI
Celera1430,939,904 - 30,973,166 (-)NCBICelera
Cytogenetic Map14p11NCBI
EXOC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38455,853,648 - 55,905,086 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl455,853,648 - 55,905,086 (+)EnsemblGRCh38hg38GRCh38
GRCh37456,719,814 - 56,771,252 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36456,414,573 - 56,466,001 (+)NCBINCBI36hg18NCBI36
Celera454,226,215 - 54,277,630 (+)NCBI
Cytogenetic Map4q12NCBI
HuRef452,673,696 - 52,725,109 (+)NCBIHuRef
CHM1_1456,754,973 - 56,806,432 (+)NCBICHM1_1
T2T-CHM13v2.0459,341,793 - 59,393,237 (+)NCBI
Exoc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39576,677,147 - 76,718,145 (+)NCBIGRCm39mm39
GRCm39 Ensembl576,677,158 - 76,718,141 (+)Ensembl
GRCm38576,529,307 - 76,570,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl576,529,311 - 76,570,294 (+)EnsemblGRCm38mm10GRCm38
MGSCv37576,958,348 - 76,999,310 (+)NCBIGRCm37mm9NCBIm37
MGSCv36577,604,086 - 77,645,073 (+)NCBImm8
MGSCv36576,046,327 - 76,087,316 (+)NCBImm8
Celera573,797,301 - 73,843,735 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
Exoc1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544715,048,959 - 15,100,660 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544715,049,087 - 15,100,628 (-)NCBIChiLan1.0ChiLan1.0
EXOC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1474,591,574 - 74,642,955 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl474,591,574 - 74,642,955 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0468,024,177 - 68,075,565 (-)NCBIMhudiblu_PPA_v0panPan3
EXOC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11348,109,773 - 48,177,070 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1348,109,810 - 48,176,177 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1348,001,315 - 48,068,611 (+)NCBI
ROS_Cfam_1.01348,723,688 - 48,790,993 (+)NCBI
ROS_Cfam_1.0 Ensembl1348,723,718 - 48,790,993 (+)Ensembl
UMICH_Zoey_3.11348,397,897 - 48,465,133 (+)NCBI
UNSW_CanFamBas_1.01347,925,412 - 47,992,453 (+)NCBI
UU_Cfam_GSD_1.01348,872,399 - 48,937,323 (+)NCBI
Exoc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528528,098,753 - 28,149,568 (-)NCBI
SpeTri2.0NW_00493648218,148,672 - 18,199,481 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EXOC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl855,189,386 - 55,246,255 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1855,189,366 - 55,246,256 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2858,314,884 - 58,371,752 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EXOC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1712,705,657 - 12,757,996 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl712,705,305 - 12,757,989 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606613,377,449 - 13,429,831 (-)NCBIVero_WHO_p1.0
Exoc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476113,494,483 - 13,556,289 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_00462476113,496,443 - 13,556,233 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH133458  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21431,631,016 - 31,631,200 (+)MAPPERmRatBN7.2
Rnor_6.01434,151,684 - 34,151,867NCBIRnor6.0
Rnor_5.01433,930,641 - 33,930,824UniSTSRnor5.0
RGSC_v3.41433,902,816 - 33,902,999UniSTSRGSC3.4
Celera1430,946,782 - 30,946,965UniSTS
RH 3.4 Map14382.88UniSTS
Cytogenetic Map14p11UniSTS
BF399306  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21431,639,634 - 31,639,807 (+)MAPPERmRatBN7.2
Rnor_6.01434,160,271 - 34,160,443NCBIRnor6.0
Rnor_5.01433,939,228 - 33,939,400UniSTSRnor5.0
RGSC_v3.41433,911,434 - 33,911,606UniSTSRGSC3.4
Celera1430,954,989 - 30,955,161UniSTS
RH 3.4 Map14382.18UniSTS
Cytogenetic Map14p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:24
Count of miRNA genes:18
Interacting mature miRNAs:23
Transcripts:ENSRNOT00000059814
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 31 47 31 19 31 5 7 74 35 41 11 5
Low 12 10 10 10 3 4 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001024770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091883 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC097392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000059814   ⟹   ENSRNOP00000056561
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,624,141 - 31,655,557 (-)Ensembl
Rnor_6.0 Ensembl1434,144,895 - 34,177,455 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000090470   ⟹   ENSRNOP00000072393
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,611,547 - 31,659,914 (-)Ensembl
Rnor_6.0 Ensembl1434,132,221 - 34,172,893 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000091230   ⟹   ENSRNOP00000070781
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,624,141 - 31,659,876 (-)Ensembl
Rnor_6.0 Ensembl1434,144,808 - 34,177,515 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106895   ⟹   ENSRNOP00000078584
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,611,547 - 31,659,892 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000116085   ⟹   ENSRNOP00000087358
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1431,611,547 - 31,659,892 (-)Ensembl
RefSeq Acc Id: NM_001024770   ⟹   NP_001019941
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,624,139 - 31,659,876 (-)NCBI
Rnor_6.01434,144,806 - 34,180,573 (-)NCBI
Rnor_5.01433,923,763 - 33,958,422 (-)NCBI
RGSC_v3.41433,895,938 - 33,933,231 (-)RGD
Celera1430,939,904 - 30,973,166 (-)RGD
Sequence:
RefSeq Acc Id: XM_039091877   ⟹   XP_038947805
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,611,536 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_039091878   ⟹   XP_038947806
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,611,536 - 31,659,740 (-)NCBI
RefSeq Acc Id: XM_039091880   ⟹   XP_038947808
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,611,536 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_039091881   ⟹   XP_038947809
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,612,011 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_039091882   ⟹   XP_038947810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,612,011 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_039091883   ⟹   XP_038947811
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,612,011 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_039091884   ⟹   XP_038947812
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,612,011 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_039091885   ⟹   XP_038947813
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,612,011 - 31,659,920 (-)NCBI
RefSeq Acc Id: XM_039091886   ⟹   XP_038947814
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21431,623,541 - 31,659,920 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001019941   ⟸   NM_001024770
- Sequence:
RefSeq Acc Id: ENSRNOP00000056561   ⟸   ENSRNOT00000059814
RefSeq Acc Id: ENSRNOP00000072393   ⟸   ENSRNOT00000090470
RefSeq Acc Id: ENSRNOP00000070781   ⟸   ENSRNOT00000091230
RefSeq Acc Id: XP_038947808   ⟸   XM_039091880
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038947805   ⟸   XM_039091877
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947806   ⟸   XM_039091878
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947813   ⟸   XM_039091885
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038947811   ⟸   XM_039091883
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038947812   ⟸   XM_039091884
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038947810   ⟸   XM_039091882
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038947809   ⟸   XM_039091881
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038947814   ⟸   XM_039091886
- Peptide Label: isoform X8
RefSeq Acc Id: ENSRNOP00000078584   ⟸   ENSRNOT00000106895
RefSeq Acc Id: ENSRNOP00000087358   ⟸   ENSRNOT00000116085
Protein Domains
Sec3-PIP2_bind

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K2V5-F1-model_v2 AlphaFold A0A0G2K2V5 1-721 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1304939 AgrOrtholog
BioCyc Gene G2FUF-15949 BioCyc
Ensembl Genes ENSRNOG00000002144 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000056561.5 UniProtKB/TrEMBL
  ENSRNOP00000070781 ENTREZGENE
  ENSRNOP00000070781.2 UniProtKB/TrEMBL
  ENSRNOP00000072393 ENTREZGENE
  ENSRNOP00000072393.2 UniProtKB/TrEMBL
  ENSRNOP00000078584 ENTREZGENE
  ENSRNOP00000078584.1 UniProtKB/TrEMBL
  ENSRNOP00000087358 ENTREZGENE
  ENSRNOP00000087358.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000059814.5 UniProtKB/TrEMBL
  ENSRNOT00000090470 ENTREZGENE
  ENSRNOT00000090470.2 UniProtKB/TrEMBL
  ENSRNOT00000091230 ENTREZGENE
  ENSRNOT00000091230.2 UniProtKB/TrEMBL
  ENSRNOT00000106895 ENTREZGENE
  ENSRNOT00000106895.1 UniProtKB/TrEMBL
  ENSRNOT00000116085 ENTREZGENE
  ENSRNOT00000116085.1 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7453203 IMAGE-MGC_LOAD
InterPro Exocyst_Exoc1 UniProtKB/TrEMBL
  Sec3-PIP2_bind UniProtKB/TrEMBL
KEGG Report rno:305287 UniProtKB/TrEMBL
MGC_CLONE MGC:114435 IMAGE-MGC_LOAD
NCBI Gene 305287 ENTREZGENE
Pfam Sec3 UniProtKB/TrEMBL
  Sec3-PIP2_bind UniProtKB/TrEMBL
PhenoGen Exoc1 PhenoGen
SMART Sec3-PIP2_bind UniProtKB/TrEMBL
UniProt A0A0G2JYT4_RAT UniProtKB/TrEMBL
  A0A0G2K2V5_RAT UniProtKB/TrEMBL
  A0A8I5ZLJ5_RAT UniProtKB/TrEMBL
  A0A8I6A8D1_RAT UniProtKB/TrEMBL
  F1LQN9_RAT UniProtKB/TrEMBL
  Q4V8H2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-08-07 Exoc1  exocyst complex component 1  Sec3l1  SEC3-like 1 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Sec3l1  SEC3-like 1 (S. cerevisiae)  Sec3l1_predicted  SEC3-like 1 (S. cerevisiae) (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Sec3l1_predicted  SEC3-like 1 (S. cerevisiae) (predicted)      Symbol and Name status set to approved 70820 APPROVED