Pia6 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Pia6 (Pristane induced arthritis QTL 6) Rattus norvegicus

Symbol: Pia6
Name: Pristane induced arthritis QTL 6
RGD ID: 61420
Trait: joint integrity trait   (VT:0010548)    
Measurement Type: arthritic paw count   (CMO:0001460)    
LOD Score: 4.9
P Value: Not Available
Variance: Not Available
Inheritance Type: recessive
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21418,631,345 - 42,337,007RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.01420,266,223 - 43,957,628RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01420,172,667 - 43,777,078RGDRnor5.0
RGSC_v3.41420,165,393 - 45,020,354RGDRGSC3.4
RGSC_v3.11420,165,393 - 44,925,828RGD
Cross Type: F2
Strains Crossed: DA E3 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
pristane  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
DA  (IEA)
E3  (IEA)

References

Related QTLs

Related QTL Description Reference
Eae10 maps to same region RGD:61031
Gluco38 maps to same region RGD:2298688
Pia39 maps to same region RGD:2302026


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69432Ugt2a1UDP glucuronosyltransferase family 2 member A1142052101820545060Rat
3936Ugt2bUDP glycosyltransferase 2 family, polypeptide B142063057220665062Rat
61856Gabra2gamma-aminobutyric acid type A receptor subunit alpha 2143709699537230030Rat
3284Pdgfraplatelet derived growth factor receptor alpha143300583833054347Rat
61981Csn2casein beta142032258120329818Rat
2101Ambnameloblastin141960176119614382Rat
3937Ugt2b37UDP-glucuronosyltransferase 2 family, member 37142081728520833917Rat
620066Paicsphosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase143119908631232731Rat
70513Gnrhrgonadotropin releasing hormone receptor142185687121874861Rat
2965Kdrkinase insert domain receptor143221787132261018Rat
3953Smr3bsubmaxillary gland androgen regulated protein 3B141978381519788557Rat
68388Nmuneuromedin U143184456431872196Rat
61990Csn3casein kappa142015403220160585Rat
2649Gabrb1gamma-aminobutyric acid type A receptor subunit beta1143606872536548946Rat
620667Dckdeoxycytidine kinase141930521819326247Rat
620831Epha5EPH receptor A5142365339324020135Rat
2667GcGC, vitamin D binding protein141863214618667563Rat
708417Ugt2b7UDP glucuronosyltransferase family 2 member B7142089668220919604Rat
620973Tectec protein tyrosine kinase143535255135461585Rat
620568KitKIT proto-oncogene receptor tyrosine kinase143254745932624694Rat
621706Ythdc1YTH domain containing 1142118543821215934Rat
621670Gabra4gamma-aminobutyric acid type A receptor subunit alpha 4143659078236667724Rat
621732Gabrg1gamma-aminobutyric acid type A receptor subunit gamma 1143739621737469606Rat
708534Sult1b1sulfotransferase family 1B member 1142049276320505491Rat
620983Oprpnopiorphin prepropeptide141970253519717550Rat
621152Csn1s2acasein alpha s2-like A142028116720295232Rat
620491Sult1d1sulfotransferase family 1D, member 1142044113520476341Rat
621069RestRE1-silencing transcription factor143085910930879828Rat
620271Clockclock circadian regulator143190854231992673Rat
68936Slc4a4solute carrier family 4 member 4141884128919293297Rat
621534Chrna9cholinergic receptor nicotinic alpha 9 subunit144223521842241939Rat
620237Ppatphosphoribosyl pyrophosphate amidotransferase143121574131250144Rat
3954Vcsa2variable coding sequence A2141985123219857697Rat
1304939Exoc1exocyst complex component 1143161153631659920Rat
621841HopxHOP homeobox143105591231082909Rat
1302967Tmprss11ctransmembrane protease, serine 11C142178212421837793Rat
1303337Arl9ADP-ribosylation factor like GTPase 9143115758531166803Rat
621815Cnga1cyclic nucleotide gated channel subunit alpha 1143556694735605065Rat
1304608Tecrltrans-2,3-enoyl-CoA reductase-like142473224124805272Rat
628623Ugt2b15UDP glucuronosyltransferase family 2 member B15142076801520783599Rat
3928Uchl1ubiquitin C-terminal hydrolase L1144148503341495590Rat
1303278Tmprss11btransmembrane serine protease 11B142138592421405894Rat
620895Ugt2b35UDP glucuronosyltransferase 2 family, polypeptide B35142085344120891039Rat
620836Adgrl3adhesion G protein-coupled receptor L3142633632027104060Rat
620592Cabs1calcium binding protein, spermatid associated 1142009696220099024Rat
708541Ugt2b17UDP glucuronosyltransferase family 2 member B17142102403521035784Rat
1305521Gnpda2glucosamine-6-phosphate deaminase 2143852066338538713Rat
1305114Mob1bMOB kinase activator 1B141933305819365845Rat
727972Zar1zygote arrest 1143519344635197382Rat
735208Spata18spermatogenesis associated 18143453193134558671Rat
2430Csn1s1casein alpha s1142034362020359614Rat
1308540Utp3UTP3, small subunit processome component141951571619517370Rat
1303099Rasl11bRAS-like family 11 member B143401492434019146Rat
1306446Tmprss11gtransmembrane protease, serine 11G142154608721587258Rat
3776Sult1e1sulfotransferase family 1E member 1142042232420439562Rat
1306094Lrrc66leucine rich repeat containing 66143458131834604534Rat
1308324Uba6ubiquitin-like modifier activating enzyme 6142188403921947857Rat
1309278Chic2cysteine-rich hydrophobic domain 2143315766933192015Rat
1308828Srd5a3steroid 5 alpha-reductase 3143204641532060796Rat
1308444Ugt2a3UDP glucuronosyltransferase family 2 member A3142057282520590295Rat
1308159Lnx1ligand of numb-protein X 1143351442933617086Rat
1311593Slain2SLAIN motif family, member 2143523603435314186Rat
1310422Dcun1d4defective in cullin neddylation 1 domain containing 4143465272334733122Rat
1560582Phox2bpaired-like homeobox 2b144106601241069202Rat
1310858Grsf1G-rich RNA sequence binding factor 1141941294419429364Rat
1333995Olr1604-psolfactory receptor pseudogene 1604143627382136274693Rat
1311135Aasdhaminoadipate-semialdehyde dehydrogenase143125501931281802Rat
1310726Cep135centrosomal protein 135143153053831595718Rat
1310766Yipf7Yip1 domain family, member 7143857104538599070Rat
1310774Guf1GTP binding elongation factor GUF1143853795338557331Rat
1311575Cracdcapping protein inhibiting regulator of actin dynamics143128406631520103Rat
1311584Stap1signal transducing adaptor family member 1142195046621981395Rat
1306201Igfbp7insulin-like growth factor binding protein 7143073741430797317Rat
1309477Polr2bRNA polymerase II subunit B143079722830834916Rat
1306481TxkTXK tyrosine kinase143546336935519448Rat
1311309FrylFRY like transcription coactivator143495662335189738Rat
1310092Nipal1NIPA-like domain containing 1143553764135561651Rat
1310958Cwh43cell wall biogenesis 43 C-terminal homolog143475427934800530Rat
1309536Slc10a4solute carrier family 10, member 4143519850935203729Rat
1310155Jchainjoining chain of multimeric IgA and IgM141953856019546384Rat
1309619Atp8a1ATPase phospholipid transporting 8A1144031501340557572Rat
1306796Enamenamelin141955672919581433Rat
1308047Gsx2GS homeobox 2143312379933126151Rat
1309336Fip1l1factor interacting with PAPOLA and CPSF1143361521033675742Rat
1305402Commd8COMM domain containing 8143604904036059617Rat
1309989Ugt2b10UDP glucuronosyltransferase 2 family, polypeptide B10142110802221127202Rat
1305269Limch1LIM and calponin homology domains 1144111257941425185Rat
1306983Tmem165transmembrane protein 165143199348932018717Rat
1310137Nsun7NOP2/Sun RNA methyltransferase family member 7144187750041935238Rat
1310384Prr27proline rich 27142023275720248617Rat
620654Tmprss11dtransmembrane serine protease 11D142170733621769398Rat
1561381RGD1561381similar to microsomal glutathione S-transferase 3141952550919526128Rat
1359713Rbm47RNA binding motif protein 47144205329042191572Rat
1564635Grxcr1glutaredoxin and cysteine rich domain containing 1144000416940126571Rat
1565933LOC360933similar to Ac1591143973808439791430Rat
1564808Usp46ubiquitin specific peptidase 46143415005534219227Rat
1564787Srp72signal recognition particle 72143116817531195717Rat
1561698Tmprss11etransmembrane serine protease 11E142129612721328203Rat
1562438Apbb2amyloid beta precursor protein binding family B member 2144155791841878622Rat
1563299Smr3asubmaxillary gland androgen regulated protein 3A142005377920059568Rat
1562708Scfd2sec1 family domain containing 2143368334834008232Rat
1561589RGD1561589similar to RIKEN cDNA 5730434I03 gene143000513830006045Rat
1565664RGD1565664similar to UDP-glucuronosyltransferase 2B1 precursor, microsomal (UDPGTR-2)142105672621082314Rat
1565048RGD1565048similar to 60S ribosomal protein L9142364807023648731Rat
1561883Odamodontogenic, ameloblast associated142019328620202517Rat
1559459RGD1559459similar to Expressed sequence AI788959142114614021167706Rat
1303061Cenpccentromere protein C142198806722046732Rat
1302956Spink2serine peptidase inhibitor, Kazal type 2143096768230974326Rat
1359201Nfxl1nuclear transcription factor, X-box binding-like 1143562608635667505Rat
708371Tmem33transmembrane protein 33144088848540910715Rat
1359468Fdcspfollicular dendritic cell secreted protein142016969120173983Rat
1312020Kctd8potassium channel tetramerization domain containing 8143877327439018182Rat
628794Csn1s2bcasein alpha s2-like B142025025720266377Rat
1309071Dzip1-ps1DAZ interacting protein 1, pseudogene 1142022723420229292Rat
1562394RGD1562394similar to ribosomal protein L30142038186220382205Rat
727887Corincorin, serine peptidase143568060135910703Rat
1359549Ociad1OCIA domain containing 1143489785134915291Rat
1584735Bend4BEN domain containing 4144075304840788686Rat
1563570RGD1563570similar to ribosomal protein S23144204574942046255Rat
1561787RGD1561787similar to Ab2-076143915989139161654Rat
1562571Thegltheg spermatid protein-like143111010431152487Rat
1565710Shisa3shisa family member 3144056367240568244Rat
1560675Tmprss11ftransmembrane serine protease 11F142149289621534792Rat
1565242Rufy3RUN and FYVE domain containing 3141943153019506531Rat
1565243LOC498339LRRGT00190141882112418839758Rat
1359460Noa1nitric oxide associated 1143083501230851296Rat
1592952LOC680377similar to Acidic leucine-rich nuclear phosphoprotein 32 family member A (Leucine-rich acidic nuclear protein)143579579935798154Rat
1592953Gpx4-ps3glutathione peroxidase 4, pseudogene 3143533811035338759Rat
1589974Stathstatherin142030732420311182Rat
1588541Atp10dATPase phospholipid transporting 10D (putative)143591172836012549Rat
1559712Pdcl2phosducin-like 2143187456331895272Rat
1587531LOC689849similar to heat shock protein 1, alpha142110398421106561Rat
1585182LOC690029similar to Phosphoglycerate kinase 1142321415023215412Rat
1586204Hspd1-ps2heat shock protein 1, pseudogene 2143995257739954795Rat
1587539LOC689841similar to Rho GTPase activating protein 11A142108834521089685Rat
1587481LOC689899similar to 60S ribosomal protein L23a142137904621379585Rat
1595834LOC364228similar to T-cell activation kelch repeat protein142068833320695396Rat
1593180Slc30a9solute carrier family 30 member 9144081628440870992Rat
1594181Hspd1-ps4heat shock protein 1, pseudogene 4143897226638974496Rat
1591303Exoc1lexocyst complex component 1 like143167344231698605Rat
1592356Amtnamelotin141964862419661181Rat
1588690LOC689798similar to UDP-glucuronosyltransferase142094444920955564Rat
1597019LOC501910similar to Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)142948016729483689Rat
1598162LOC679908similar to CG1249-PA143263628032636653Rat
1598004LOC681268similar to RIKEN cDNA 2410004L22144232338442323749Rat
1597128LOC364143similar to WW domain binding protein 11143429733934299886Rat
1597129LOC364127similar to peptidylprolyl isomerase D142009065620093812Rat
1594202Sgcbsarcoglycan, beta143456361434578614Rat
1596322Tmprss11atransmembrane serine protease 11A142162488121665284Rat
2319120Cox7b2cytochrome c oxidase subunit 7B2143669309636805323Rat
2318302LOC100362385sperm motility kinase-like142267773222682199Rat
2319541Ociad2OCIA domain containing 2143487366834889276Rat
2322951LOC100363494ubiquitin B-like143431294934313236Rat
2321603LOC100364155hypothetical LOC100364155142071753520739142Rat
2321083Ppial4dpeptidylprolyl isomerase A (cyclophilin A)-like 4D142100652221007284Rat
2321178LOC100364381hypothetical LOC100364381142146267421463166Rat
2324284LOC100362674phytoceramidase, alkaline-like142572905125729730Rat
2324321LOC100362637myelin-associated oligodendrocytic basic protein-like142350234823502821Rat
2323837LOC100359456eukaryotic translation initiation factor 5-like143481029534812256Rat
2324510LOC100362544dihydrouridine synthase 4-like142327997423280735Rat
6489076Dancrdifferentiation antagonizing non-protein coding RNA143412695634127936Rat
6496885LOC100910703heterogeneous nuclear ribonucleoprotein A3-like142096235220965420Rat
7498730LOC102551532uncharacterized LOC102551532143089262630894920Rat
7501116LOC102556465histone-binding protein RBBP4-like143315264933153949Rat
7489037Mir6321microRNA 6321141945931719459457Rat
7540659LOC102554412uncharacterized LOC102554412143404969034058012Rat
7504244LOC102547308uncharacterized LOC102547308144034595840348826Rat
7513863LOC102546751uncharacterized LOC102546751142601753826019528Rat
7520032LOC102556008uncharacterized LOC102556008143175176431829013Rat
7632687LOC102552854uncharacterized LOC102552854143124780131255151Rat
7621128LOC102547499uncharacterized LOC102547499144061905740622769Rat
7623930LOC102549397zinc finger protein 120-like142569958225701112Rat
7564466LOC102554514uncharacterized LOC102554514143416173934171159Rat
7684935LOC102551595uncharacterized LOC102551595143101355731025555Rat
7690127LOC102551339uncharacterized LOC102551339143049803330624872Rat
7714547LOC102550273synaptonemal complex central element protein 2-like143580073535802489Rat
9195730LOC103690383UDP-glucuronosyltransferase 2B4-like142103826621042369Rat
9198670LOC103692836uncharacterized LOC103692836143976352839775762Rat
9201561LOC10369278560S ribosomal protein L39143075805130758421Rat
9399075LOC103692776uncharacterized LOC103692776142180985621825718Rat
9438180LOC103692822uncharacterized LOC103692822143456039134563548Rat
11355448LOC108352740uncharacterized LOC108352740143195842231975843Rat
11434380LOC108352824SMR1 protein-like141990080819901906Rat
11456987LOC108352849small nuclear ribonucleoprotein G pseudogene142763159327632651Rat
11362928LOC108352851uncharacterized LOC108352851143433385834338439Rat
11446409LOC108352727uncharacterized LOC108352727142019566120214723Rat
11438225LOC108352732uncharacterized LOC108352732142621490926225971Rat
11438234Trnac-gca38transfer RNA cysteine (anticodon GCA) 38143075871030758781Rat
11440419LOC108352745uncharacterized LOC108352745144071725840752979Rat
11432042LOC108352735uncharacterized LOC108352735143097803930982711Rat
11432687LOC108352729uncharacterized LOC108352729142121603021241866Rat
11405419LOC108352841uncharacterized LOC108352841142647842326487525Rat
11375302LOC108352734uncharacterized LOC108352734143039064930402623Rat
11387368LOC108352742uncharacterized LOC108352742143442022134447174Rat
11378147LOC108352744glyceraldehyde-3-phosphate dehydrogenase pseudogene144063372140634794Rat
11380862LOC108352728uncharacterized LOC108352728142039739320404391Rat
11503027LOC108352825protein transport protein Sec61 subunit gamma pseudogene142556696925655719Rat
11508820LOC10835274340S ribosomal protein S2 pseudogene143593582335936668Rat
11497443LOC108352848actin, alpha skeletal muscle-like142211410422114971Rat
11512407LOC108352852glyceraldehyde-3-phosphate dehydrogenase pseudogene144080916940810344Rat
41322366LOC120096527uncharacterized LOC120096527142300644523041321Rat
41086856LOC120096535uncharacterized LOC120096535144060294640608991Rat
41111789LOC120096875U6 spliceosomal RNA143096060030960706Rat
41234281LOC120096530uncharacterized LOC120096530143274985732751927Rat
41382898LOC120096589uncharacterized LOC120096589142066552120675111Rat
41089551LOC120096599uncharacterized LOC120096599143709156937096980Rat
41251030LOC120096605uncharacterized LOC120096605144125597041257155Rat
41279334LOC120096603uncharacterized LOC120096603144035952540364571Rat
41325492LOC120096723ferritin light chain 1-like142605035526050863Rat
41091691LOC120096812small nucleolar RNA SNORA17143047591730476044Rat
41280434LOC120096728ran guanine nucleotide release factor-like143075131230753398Rat
41360123LOC120096590uncharacterized LOC120096590142067519020682835Rat
41386864LOC120096772U7 small nuclear RNA143795682137956881Rat
41092069NEWGENE_40933693transfer RNA proline (anticodon GGG)142989397029894044Rat
41328132LOC120096600uncharacterized LOC120096600143943346339437629Rat
41119499LOC120096819small nucleolar RNA SNORA17142437744624377574Rat
41363359LOC120096750U6 spliceosomal RNA142532491125325017Rat
41094989LOC120096729uncharacterized LOC120096729143077506730780888Rat
41176151LOC12009670260S ribosomal protein L7-like143878280338783597Rat
41151227LOC120096857U4 spliceosomal RNA142925528129255363Rat
41189227LOC120096526UDP-glucuronosyltransferase 2B17-like142080250220807337Rat
41154061LOC120096593uncharacterized LOC120096593142792582727940488Rat
41155403LOC120096587UDP-glucuronosyltransferase 2B17-like142074059920745728Rat
41179800LOC120096787small nucleolar RNA SNORA13142831380228313928Rat
41344346LOC120096595uncharacterized LOC120096595143327727833278438Rat
41395196LOC120096806U1 spliceosomal RNA142197358221973761Rat
41216070LOC120096807small nucleolar RNA SNORA17143861569838615827Rat
41345606LOC120096529uncharacterized LOC120096529143235515232357606Rat
41396064LOC120096849U2 spliceosomal RNA144130747441307627Rat
41396352LOC120096731uncharacterized LOC120096731143098967430995959Rat
41182668LOC120096852U2 spliceosomal RNA142163718321637302Rat
41347535LOC120096823small nucleolar RNA SNORA17143847900538479130Rat
41398362LOC120096810small nucleolar RNA SNORA17142942757529427704Rat
41070370LOC120096752U6 spliceosomal RNA143764334437643450Rat
41219020LOC120096733uncharacterized LOC120096733143107643331077597Rat
41230065LOC120096744U6 spliceosomal RNA143394732233947428Rat
41374531LOC120096730uncharacterized LOC120096730143075052230755635Rat
41073061LOC120096811small nucleolar RNA SNORA17143961071539610842Rat
41131698NEWGENE_40933816transfer RNA valine (anticodon AAC)143696361536963687Rat
41273802LOC120096585uncharacterized LOC120096585142040441720406946Rat
41296642LOC120096828U1 spliceosomal RNA142357271223572874Rat
41110000LOC120096756U6 spliceosomal RNA143263823932638343Rat
41134169LOC120096591uncharacterized LOC120096591142226463822347467Rat
40944653LOC120096871U6 spliceosomal RNA144149731241497418Rat
40997259LOC120096596uncharacterized LOC120096596143402127934025049Rat
40997548LOC120096598uncharacterized LOC120096598143612390036162244Rat
40947943LOC120096732uncharacterized LOC120096732143105623431060971Rat
40949335LOC120096525signal recognition particle 19 kDa protein-like141876858218769192Rat
40949944LOC120096866U6 spliceosomal RNA142139165121391757Rat
40950797LOC120096528uncharacterized LOC120096528142765058027663108Rat
40975998LOC120096832small nucleolar RNA SNORA76141963029219630423Rat
40926311LOC120096533uncharacterized LOC120096533143804510538050006Rat
40932403LOC12009673460S ribosomal protein L23a-like143143224731432742Rat
40961482LOC120096737uncharacterized LOC120096737143119032931195581Rat
40986009LOC120096830small nucleolar RNA SNORA17142445330224453395Rat
40988626LOC120096592uncharacterized LOC120096592142430608824337634Rat
40990623NEWGENE_40973998transfer RNA histidin (anticodon AUG)143520503235205104Rat
40943998LOC120096724uncharacterized LOC120096724143159528931623397Rat
40995005LOC120096743U6 spliceosomal RNA143769257737692683Rat
41243425LOC120096602uncharacterized LOC120096602144023267440243612Rat
41244228LOC120096831small nucleolar RNA SNORA26143412764034127760Rat
41313716LOC120096736uncharacterized LOC120096736143131369431338837Rat
41027913LOC120096594uncharacterized LOC120096594143188221031884883Rat
41029313LOC120096725myosin light polypeptide 6-like143602148036043186Rat
41135427LOC120096606uncharacterized LOC120096606144204813142054952Rat
41255002LOC120096597uncharacterized LOC120096597143540854835410632Rat
41256287LOC120096584uncharacterized LOC120096584142013075920172275Rat
41339146LOC120096604uncharacterized LOC120096604144070047440717094Rat
41144709LOC120096601uncharacterized LOC120096601143974936039763419Rat
41057074LOC120096753U1 spliceosomal RNA142224747522247636Rat
41221305LOC120096588uncharacterized LOC120096588142059933820650775Rat
41292566LOC120096532uncharacterized LOC120096532143484139934843213Rat
41299431LOC120096796small nucleolar RNA SNORA48143980705839807196Rat
41059665LOC120096531NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5-like143294983932950212Rat
41300422LOC120096757U6 spliceosomal RNA144204096842041072Rat
41062143LOC120096755U6 spliceosomal RNA142809365428093760Rat
41335138LOC120096735uncharacterized LOC120096735143116489631171639Rat
41038991LOC120096781small nucleolar RNA SNORD113/SNORD114 family142836562528365700Rat
41041616LOC120096859U4 spliceosomal RNA141985066119850849Rat
41043845LOC120096586kelch repeat and BTB domain-containing protein 8-like142061325720620826Rat
41044971LOC120096534uncharacterized LOC120096534143848770738491128Rat
41074429LOC120096874U6 spliceosomal RNA143054888330548989Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10622D14Mgh3120141863134518631470Ratregion
10623D14Wox12194141864404318644232Ratregion
11030D14Mit4139144233688142337007Ratregion
33818D14Mit9249144187344441873686Ratregion
34102D14Mgh5150144187102241871196Ratregion
34214D14Mgh6145144165819041658327Ratregion
11482D14Wox13194141985881119859012Ratregion
11482D14Wox13194141984803919848270Ratregion
11483D14Wox17141985879219859003Ratregion
33692D14Mit12140143766971937669857Ratregion
33772D14Mit3100143333435333334448Ratregion
36287D14Rat12153143915358139153750Ratregion
35319D14Rat16190144226252942262698Ratregion
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35465D14Rat13125143258323832583345Ratregion
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37624D14Rat68246144104121141041453Ratregion
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35723D14Rat25168144079326040793460Ratregion
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38232D14Rat56181144162500341625190Ratregion
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7205986Ppia150142100663421006784Ratregion
5038634BB23255183141942923919429322Ratregion
5036007PMC84675P1646143086409030864736Ratregion
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502794338.MMHAP88FLE5.seq158142229442622294584Ratregion
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5028253D4Mit35368142416042724160495Ratregion
5028261D5Mit306241143127548831275729Ratregion
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5063562BI289920104143394297733943081Ratregion
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5087052BM389183198143097044330970641Ratregion
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5086425AW529895205141943559819435803Ratregion
5087552PMC312758P2177143121618331216360Ratregion
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5085850AI231703161141932426119324422Ratregion
5084462AI013730180144111524641115426Ratregion
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5081074RH141950199144045963440459833Ratregion
5085274AI176044198141930715719307352Ratregion
5083621BI276488217143198877431988991Ratregion
5504072px-63c9212143986842239868634Ratregion
5507632D5Buc331172143660493536606107Ratregion
5507634UniSTS:1426321417143377449733775914Ratregion
5504885ha3026130142314500623145136Ratregion
5505030Gpx40143533811235338614Ratregion
5505835UniSTS:495883239142365344823653687Ratregion
5506047UniSTS:498239426143254805132548477Ratregion
5506869G46840210141906187019062080Ratregion
5506931G54151167143198999231990159Ratregion
5499889UniSTS:235209266141951580719516073Ratregion
5499507stSG6026120144183496141836169Ratregion
5499507stSG6026120144183490941836169Ratregion
5499885UniSTS:235197252143591178135912033Ratregion
5501169PMC151834P1403144223562742236030Ratregion
5501508D14S2921064143197739531978459Ratregion
5501679UniSTS:265677293142100676521007058Ratregion
5501720UniSTS:266988152142400776024007912Ratregion
5501938MARC_17835-17836:1025010330:1490144106588241066372Ratregion
5502627RH125924233141876873218768964Ratregion
5502847Arhgap11a0142108931021090044Ratregion
5502881Gabrb1693143608043536081128Ratregion
6484684D14Uwm13214142811832128118535Ratregion
6484686D14Uwm14262143161416631614428Ratregion
6480636D14Uwm1140143170701131707201Ratregion
6480638D14Uwm2220143367787733678087Ratregion
6480641D14Uwm3298143354871033549008Ratregion
6480643D14Uwm4240143247190232472125Ratregion
6484235D14Uwm5190143351459933514760Ratregion
6484237D14Uwm6389143355010433550483Ratregion
6484239D14Uwm7240143195765831957909Ratregion
6484241D14Uwm8300143237447032374766Ratregion
6484241D14Uwm8300143237430032374766Ratregion
6484243D14Uwm9210143275661332756819Ratregion
6484245D14Uwm10220143293431632934528Ratregion
6484247D14Uwm11190143309750833097688Ratregion
Position Markers

Flank 1: (D14Mgh3)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21418,631,345 - 18,631,470 (+)MAPPER
Rnor_6.01420,266,223 - 20,266,347NCBI
Rnor_5.01420,172,667 - 20,172,791UniSTS
RGSC_v3.41420,165,393 - 20,165,518RGD
RGSC_v3.41420,165,394 - 20,165,518UniSTS
RGSC_v3.11420,165,393 - 20,165,518RGD
Celera1417,991,537 - 17,991,661UniSTS
RH 3.4 Map14265.8UniSTS
RH 3.4 Map14265.8RGD
RH 2.0 Map14260.2RGD
Cytogenetic Map14p22UniSTS
Peak: (D14Rat8)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21430,320,092 - 30,320,216 (+)MAPPER
Rnor_6.01432,593,926 - 32,594,049NCBI
Rnor_5.01432,389,647 - 32,389,770UniSTS
RGSC_v3.41432,584,631 - 32,584,754UniSTS
RGSC_v3.41432,584,630 - 32,584,754RGD
RGSC_v3.11432,584,631 - 32,584,754RGD
Celera1429,652,646 - 29,652,769UniSTS
RH 3.4 Map14398.9RGD
RH 3.4 Map14398.9UniSTS
RH 2.0 Map14354.2RGD
SHRSP x BN Map1418.18RGD
Flank 2: (D14Mit4)
Rat AssemblyChrPosition (strand)Source
mRatBN7.21442,336,881 - 42,337,007 (+)MAPPER
Rnor_6.01443,957,503 - 43,957,628NCBI
Rnor_5.01443,776,512 - 43,776,637UniSTS
Rnor_5.01443,776,512 - 43,777,078UniSTS
RGSC_v3.41445,020,228 - 45,020,354RGD
RGSC_v3.41445,020,229 - 45,020,354UniSTS
RGSC_v3.11444,925,389 - 44,925,828RGD
Celera1441,490,248 - 41,490,386UniSTS
RH 2.0 Map14466.1RGD
FHH x ACI Map1439.47RGD
Cytogenetic Map14p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14381307421217635Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141757341219726296Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Pia6

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_gene whole genome analysis using PGMapper revealed Gc as RA associated gene and Gc as RA associated polymorphism either in coding or regulatory region 2300074
qtl_gene 133 known and 41 novel genes were found in an analysis based on PubMed and OMIM data 2307198
qtl_general controls arthritis severity during the early period and associates with the arthritis chronicity from day 83 61089