Aldh9a1-ps1 (aldehyde dehydrogenase 9 family, member A1, pseudogene 1) - Rat Genome Database

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Gene: Aldh9a1-ps1 (aldehyde dehydrogenase 9 family, member A1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Aldh9a1-ps1
Name: aldehyde dehydrogenase 9 family, member A1, pseudogene 1
RGD ID: 1593175
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC498384; similar to aldehyde dehydrogenase family 9, subfamily A1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81467,609,318 - 67,610,363 (-)NCBIGRCr8
mRatBN7.21463,396,764 - 63,403,072 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.01467,716,515 - 67,722,823 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01467,746,226 - 67,752,534 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41468,349,773 - 68,526,110 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1462,423,100 - 62,429,408 (-)NCBICelera
Cytogenetic Map14q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Aldh9a1-ps1
53 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat

Markers in Region
D14Rat64  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21463,618,971 - 63,619,178 (+)MAPPERmRatBN7.2
Rnor_6.01467,944,692 - 67,944,898NCBIRnor6.0
Rnor_5.01467,969,510 - 67,969,716UniSTSRnor5.0
RGSC_v3.41468,573,959 - 68,574,165UniSTSRGSC3.4
RGSC_v3.41468,573,958 - 68,574,165RGDRGSC3.4
RGSC_v3.11468,576,350 - 68,576,556RGD
Celera1462,645,114 - 62,645,320UniSTS
RH 3.4 Map14468.2RGD
RH 3.4 Map14468.2UniSTS
RH 2.0 Map14599.3RGD
SHRSP x BN Map1430.53RGD
FHH x ACI Map1445.9899RGD
Cytogenetic Map14q11UniSTS


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-15557 BioCyc
NCBI Gene 498384 ENTREZGENE
PhenoGen Aldh9a1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Aldh9a1-ps1  aldehyde dehydrogenase 9 family, member A1, pseudogene 1  LOC498384  similar to aldehyde dehydrogenase family 9, subfamily A1  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC498384  similar to aldehyde dehydrogenase family 9, subfamily A1      Symbol and Name status set to provisional 70820 PROVISIONAL