Gabrg1 (gamma-aminobutyric acid type A receptor subunit gamma 1) - Rat Genome Database

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Gene: Gabrg1 (gamma-aminobutyric acid type A receptor subunit gamma 1) Rattus norvegicus
Analyze
Symbol: Gabrg1
Name: gamma-aminobutyric acid type A receptor subunit gamma 1
RGD ID: 621732
Description: Enables GABA receptor binding activity and GABA-A receptor activity. Predicted to be involved in several processes, including GABAergic synaptic transmission; chloride transmembrane transport; and gamma-aminobutyric acid signaling pathway. Predicted to act upstream of or within chemical synaptic transmission. Part of receptor complex. Orthologous to human GABRG1 (gamma-aminobutyric acid type A receptor subunit gamma1); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: GABA(A) receptor subunit gamma-1; gamma-aminobutyric acid (GABA) A receptor, gamma 1; gamma-aminobutyric acid A receptor, gamma 1; gamma-aminobutyric acid receptor subunit gamma-1; gamma-aminobutyric acid type A receptor gamma 1 subunit
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21437,396,217 - 37,469,606 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1437,396,294 - 37,635,956 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1437,753,276 - 37,828,496 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01439,058,046 - 39,133,276 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01437,538,976 - 37,614,195 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01439,964,502 - 40,051,306 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1439,964,588 - 40,049,354 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01439,777,443 - 39,860,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41439,878,182 - 39,951,391 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11439,880,572 - 39,953,782 (+)NCBI
Celera1436,610,452 - 36,681,348 (+)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
7. Identification, coassembly, and activity of gamma-aminobutyric acid receptor subunits in renal proximal tubular cells. Sarang SS, etal., J Pharmacol Exp Ther. 2008 Jan;324(1):376-82. Epub 2007 Oct 24.
8. Structural and functional characterization of the gamma 1 subunit of GABAA/benzodiazepine receptors. Ymer S, etal., EMBO J 1990 Oct;9(10):3261-7.
Additional References at PubMed
PMID:10900017   PMID:11891290   PMID:18292084   PMID:24425869   PMID:33288547  


Genomics

Comparative Map Data
Gabrg1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21437,396,217 - 37,469,606 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1437,396,294 - 37,635,956 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1437,753,276 - 37,828,496 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01439,058,046 - 39,133,276 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01437,538,976 - 37,614,195 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01439,964,502 - 40,051,306 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1439,964,588 - 40,049,354 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01439,777,443 - 39,860,718 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41439,878,182 - 39,951,391 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11439,880,572 - 39,953,782 (+)NCBI
Celera1436,610,452 - 36,681,348 (+)NCBICelera
Cytogenetic Map14p11NCBI
GABRG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38446,035,769 - 46,124,054 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl446,035,769 - 46,124,054 (-)EnsemblGRCh38hg38GRCh38
GRCh37446,037,786 - 46,126,071 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36445,732,543 - 45,820,839 (-)NCBINCBI36Build 36hg18NCBI36
Build 34445,878,716 - 45,967,010NCBI
Celera446,488,013 - 46,574,168 (-)NCBICelera
Cytogenetic Map4p12NCBI
HuRef445,360,145 - 45,446,265 (-)NCBIHuRef
CHM1_1446,036,916 - 46,125,198 (-)NCBICHM1_1
T2T-CHM13v2.0446,004,706 - 46,090,897 (-)NCBIT2T-CHM13v2.0
Gabrg1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39570,906,512 - 70,999,960 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl570,908,390 - 70,999,960 (-)EnsemblGRCm39 Ensembl
GRCm38570,751,047 - 70,842,617 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl570,751,047 - 70,842,617 (-)EnsemblGRCm38mm10GRCm38
MGSCv37571,142,286 - 71,233,856 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36571,030,182 - 71,121,752 (-)NCBIMGSCv36mm8
Celera568,018,391 - 68,111,259 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map537.43NCBI
Gabrg1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554432,276,555 - 2,347,983 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554432,276,592 - 2,353,312 (+)NCBIChiLan1.0ChiLan1.0
GABRG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1482,010,545 - 82,097,452 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0476,034,539 - 76,121,797 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1486,762,932 - 86,850,033 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl486,762,417 - 86,850,033 (+)Ensemblpanpan1.1panPan2
GABRG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11342,194,929 - 42,276,379 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1342,200,202 - 42,276,711 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1342,147,102 - 42,226,119 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01342,802,382 - 42,881,664 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1342,802,403 - 42,881,644 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11342,478,701 - 42,559,787 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01342,542,428 - 42,621,417 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01342,891,593 - 42,972,762 (-)NCBIUU_Cfam_GSD_1.0
Gabrg1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528533,824,202 - 33,908,100 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648212,392,248 - 12,474,056 (-)EnsemblSpeTri2.0
SpeTri2.0NW_00493648212,390,328 - 12,473,904 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl836,198,060 - 36,262,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1836,198,056 - 36,262,492 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2838,019,051 - 38,061,900 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABRG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1274,133,320 - 4,224,366 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl274,133,161 - 4,219,122 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604750,208,763 - 50,323,326 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabrg1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476120,964,276 - 21,040,418 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476120,964,359 - 21,045,151 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Gabrg1
346 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:93
Interacting mature miRNAs:96
Transcripts:ENSRNOT00000003240
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 50
Low 5 1 24 10 30
Below cutoff 1 12 4 10 4 6 6 12 11 6 6

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000003240   ⟹   ENSRNOP00000003240
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1437,396,294 - 37,635,956 (+)Ensembl
Rnor_6.0 Ensembl1439,964,588 - 40,049,354 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108194   ⟹   ENSRNOP00000086867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1437,396,294 - 37,635,956 (+)Ensembl
RefSeq Acc Id: NM_080586   ⟹   NP_542153
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21437,396,294 - 37,467,654 (+)NCBI
Rnor_6.01439,964,588 - 40,049,354 (+)NCBI
Rnor_5.01439,777,443 - 39,860,718 (+)NCBI
RGSC_v3.41439,878,182 - 39,951,391 (+)RGD
Celera1436,610,452 - 36,681,348 (+)RGD
Sequence:
RefSeq Acc Id: XM_017599055   ⟹   XP_017454544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21437,396,217 - 37,469,606 (+)NCBI
Rnor_6.01439,964,502 - 40,051,306 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_542153 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454544 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein CAA40739 (Get FASTA)   NCBI Sequence Viewer  
  EDL90009 (Get FASTA)   NCBI Sequence Viewer  
  EDL90010 (Get FASTA)   NCBI Sequence Viewer  
  P23574 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_542153   ⟸   NM_080586
- Peptide Label: precursor
- UniProtKB: P23574 (UniProtKB/Swiss-Prot),   A6JD87 (UniProtKB/TrEMBL),   A0A8I6A4K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454544   ⟸   XM_017599055
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A4K4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000003240   ⟸   ENSRNOT00000003240
RefSeq Acc Id: ENSRNOP00000086867   ⟸   ENSRNOT00000108194
Protein Domains
Neurotransmitter-gated ion-channel ligand-binding   Neurotransmitter-gated ion-channel transmembrane

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P23574-F1-model_v2 AlphaFold P23574 1-465 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621732 AgrOrtholog
BioCyc Gene G2FUF-15831 BioCyc
Ensembl Genes ENSRNOG00000002360 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000003240 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000086867.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003240 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000108194.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABBAg1_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABBAg_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:140674 UniProtKB/Swiss-Prot
NCBI Gene 140674 ENTREZGENE
PANTHER GAMMA-AMINOBUTYRIC ACID RECEPTOR SUBUNIT GAMMA-1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18945 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gabrg1 PhenoGen
PRINTS GABAARECEPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABAARGAMMA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABAARGAMMA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I6A4K4 ENTREZGENE, UniProtKB/TrEMBL
  A6JD87 ENTREZGENE, UniProtKB/TrEMBL
  A6JD88_RAT UniProtKB/TrEMBL
  GBRG1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-06 Gabrg1  gamma-aminobutyric acid type A receptor subunit gamma 1  Gabrg1  gamma-aminobutyric acid type A receptor gamma 1 subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Gabrg1  gamma-aminobutyric acid type A receptor gamma 1 subunit  Gabrg1  gamma-aminobutyric acid (GABA) A receptor, gamma 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-25 Gabrg1  gamma-aminobutyric acid (GABA) A receptor, gamma 1  Gabrg1  gamma-aminobutyric acid A receptor, gamma 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-11-17 Gabrg1  gamma-aminobutyric acid A receptor, gamma 1    gamma-aminobutyric acid (GABA) A receptor, gamma 1  Name updated 1299863 APPROVED
2004-12-14 Gabrg1  gamma-aminobutyric acid (GABA) A receptor, gamma 1      Symbol and Name status set to approved 1299863 APPROVED
2002-08-07 Gabrg1  gamma-aminobutyric acid (GABA) A receptor, gamma 1      Symbol and Name status set to provisional 70820 PROVISIONAL