Pgm2 (phosphoglucomutase 2) - Rat Genome Database

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Gene: Pgm2 (phosphoglucomutase 2) Rattus norvegicus
Analyze
Symbol: Pgm2
Name: phosphoglucomutase 2
RGD ID: 1306061
Description: Predicted to enable glucose-1,6-bisphosphate synthase activity; phosphoglucomutase activity; and phosphopentomutase activity. Predicted to be involved in purine ribonucleoside salvage. Predicted to act upstream of or within glucose metabolic process. Predicted to be located in cytosol. Orthologous to human PGM2 (phosphoglucomutase 2); PARTICIPATES IN glycogen biosynthetic pathway; glycogen degradation pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; acetamide; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC289632; Pgm1; phosphoglucomutase 1; phosphoglucomutase-2
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21444,166,314 - 44,199,823 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1444,164,425 - 44,199,967 (-)Ensembl
Rnor_6.01445,829,440 - 45,863,883 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1445,829,446 - 45,863,877 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01445,635,117 - 45,669,783 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41446,827,166 - 46,862,298 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1443,308,677 - 43,341,872 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Comprehensive gene review and curation RGD comprehensive gene curation
7. A phylogenetic approach to the identification of phosphoglucomutase genes. Whitehouse DB, etal., Mol Biol Evol. 1998 Apr;15(4):456-62.
Additional References at PubMed
PMID:1180875   PMID:1840235   PMID:4646763   PMID:5392465   PMID:6457600   PMID:7323947   PMID:7444718   PMID:12477932   PMID:17804405   PMID:23533145  


Genomics

Comparative Map Data
Pgm2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21444,166,314 - 44,199,823 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1444,164,425 - 44,199,967 (-)Ensembl
Rnor_6.01445,829,440 - 45,863,883 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1445,829,446 - 45,863,877 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01445,635,117 - 45,669,783 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41446,827,166 - 46,862,298 (-)NCBIRGSC3.4rn4RGSC3.4
Celera1443,308,677 - 43,341,872 (-)NCBICelera
Cytogenetic Map14p11NCBI
PGM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38437,826,686 - 37,862,937 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl437,826,660 - 37,862,937 (+)EnsemblGRCh38hg38GRCh38
GRCh37437,828,308 - 37,864,558 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36437,504,737 - 37,540,953 (+)NCBINCBI36hg18NCBI36
Build 34437,650,908 - 37,686,275NCBI
Celera438,268,441 - 38,304,734 (+)NCBI
Cytogenetic Map4p14NCBI
HuRef437,152,706 - 37,189,192 (+)NCBIHuRef
CHM1_1437,827,787 - 37,864,065 (+)NCBICHM1_1
T2T-CHM13v2.0437,795,746 - 37,832,018 (+)NCBI
Pgm2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39564,250,258 - 64,285,698 (+)NCBIGRCm39mm39
GRCm39 Ensembl564,250,293 - 64,285,694 (+)Ensembl
GRCm38564,092,919 - 64,128,355 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl564,092,950 - 64,128,351 (+)EnsemblGRCm38mm10GRCm38
MGSCv37564,484,189 - 64,519,400 (+)NCBIGRCm37mm9NCBIm37
MGSCv36564,372,085 - 64,407,296 (+)NCBImm8
Celera561,380,641 - 61,415,276 (+)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map532.8NCBI
Pgm2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554439,302,011 - 9,329,917 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554439,302,011 - 9,329,631 (-)NCBIChiLan1.0ChiLan1.0
PGM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1438,008,839 - 38,045,008 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl438,008,839 - 38,045,008 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0432,153,576 - 32,189,882 (+)NCBIMhudiblu_PPA_v0panPan3
PGM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1374,344,670 - 74,382,511 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl374,344,810 - 74,382,494 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha376,891,562 - 76,929,967 (-)NCBI
ROS_Cfam_1.0375,124,548 - 75,163,434 (-)NCBI
ROS_Cfam_1.0 Ensembl375,124,005 - 75,163,383 (-)Ensembl
UMICH_Zoey_3.1374,390,121 - 74,430,304 (-)NCBI
UNSW_CanFamBas_1.0374,536,359 - 74,577,037 (-)NCBI
UU_Cfam_GSD_1.0374,916,844 - 74,955,221 (-)NCBI
Pgm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528540,446,902 - 40,477,673 (-)NCBI
SpeTri2.0NW_0049364825,820,576 - 5,851,558 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PGM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl829,307,685 - 29,381,571 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1829,307,628 - 29,343,012 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2830,718,162 - 30,753,503 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PGM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12712,425,900 - 12,462,606 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl2712,427,225 - 12,462,299 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604758,837,654 - 58,874,031 (-)NCBIVero_WHO_p1.0
Pgm2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248406,412,797 - 6,453,411 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046248406,412,757 - 6,453,008 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
RH128308  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21444,178,337 - 44,178,537 (+)MAPPERmRatBN7.2
Rnor_6.01445,842,348 - 45,842,547NCBIRnor6.0
Rnor_5.01445,648,019 - 45,648,218UniSTSRnor5.0
RGSC_v3.41446,840,118 - 46,840,317UniSTSRGSC3.4
Celera1443,320,693 - 43,320,892UniSTS
Cytogenetic Map14p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:113
Interacting mature miRNAs:119
Transcripts:ENSRNOT00000002977
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 40 25 19 25 1 1 74 35 34 11 1
Low 10 17 16 16 7 10 7 7
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002977   ⟹   ENSRNOP00000002977
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1444,164,425 - 44,199,967 (-)Ensembl
Rnor_6.0 Ensembl1445,829,448 - 45,863,877 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000086994   ⟹   ENSRNOP00000070194
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1445,829,446 - 45,859,908 (-)Ensembl
RefSeq Acc Id: NM_001106007   ⟹   NP_001099477
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21444,166,314 - 44,199,801 (-)NCBI
Rnor_6.01445,829,446 - 45,863,872 (-)NCBI
Rnor_5.01445,635,117 - 45,669,783 (-)NCBI
RGSC_v3.41446,827,166 - 46,862,298 (-)RGD
Celera1443,308,677 - 43,341,872 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250996   ⟹   XP_006251058
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21444,166,314 - 44,199,823 (-)NCBI
Rnor_6.01445,829,440 - 45,863,883 (-)NCBI
Rnor_5.01445,635,117 - 45,669,783 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006250997   ⟹   XP_006251059
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21444,166,314 - 44,199,823 (-)NCBI
Rnor_6.01445,829,440 - 45,863,882 (-)NCBI
Rnor_5.01445,635,117 - 45,669,783 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001099477 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251058 (Get FASTA)   NCBI Sequence Viewer  
  XP_006251059 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI60893 (Get FASTA)   NCBI Sequence Viewer  
  EDL90096 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001099477   ⟸   NM_001106007
- Sequence:
RefSeq Acc Id: XP_006251058   ⟸   XM_006250996
- Peptide Label: isoform X1
- UniProtKB: F7FLB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251059   ⟸   XM_006250997
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000002977   ⟸   ENSRNOT00000002977
RefSeq Acc Id: ENSRNOP00000070194   ⟸   ENSRNOT00000086994

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F7FLB2-F1-model_v2 AlphaFold F7FLB2 1-620 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699324
Promoter ID:EPDNEW_R9847
Type:initiation region
Name:Pgm2_1
Description:phosphoglucomutase 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01445,863,837 - 45,863,897EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
14 45858839 45858840 T G snv SR/JrHsd (MCW)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
14 45635351 45635352 A G snv FHH/EurMcwi (MCW)
14 45664750 45664751 T G snv SR/JrHsd (MCW)


Assembly: RGSC_v3.4

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
14 46827400 46827401 A G snv FHH/EurMcwi (MCW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306061 AgrOrtholog
BioCyc Gene G2FUF-15702 BioCyc
BioCyc Pathway PWY-5941 [glycogen degradation II] BioCyc
  PWY-7343 [UDP-alpha-D-glucose biosynthesis] BioCyc
Ensembl Genes ENSRNOG00000002185 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002977 ENTREZGENE
  ENSRNOP00000002977.7 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000002977 ENTREZGENE
  ENSRNOT00000002977.6 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7445317 IMAGE-MGC_LOAD
InterPro A-D-PHexomutase_a/b/a-I UniProtKB/TrEMBL
  A-D-PHexomutase_a/b/a-I/II/III UniProtKB/TrEMBL
  A-D-PHexomutase_a/b/a-II UniProtKB/TrEMBL
  A-D-PHexomutase_a/b/a-III UniProtKB/TrEMBL
  A-D-PHexomutase_C UniProtKB/TrEMBL
  A-D-PHexomutase_C_sf UniProtKB/TrEMBL
  A-D-PHexomutase_CS UniProtKB/TrEMBL
  A-D-PHexomutase_N UniProtKB/TrEMBL
MGC_CLONE MGC:188332 IMAGE-MGC_LOAD
NCBI Gene 289632 ENTREZGENE
Pfam PGM_PMM_I UniProtKB/TrEMBL
  PGM_PMM_II UniProtKB/TrEMBL
  PGM_PMM_III UniProtKB/TrEMBL
  PGM_PMM_IV UniProtKB/TrEMBL
PhenoGen Pgm2 PhenoGen
PRINTS PGMPMM UniProtKB/TrEMBL
PROSITE PGM_PMM UniProtKB/TrEMBL
Superfamily-SCOP A-D-PHexomutase_a/b/a-I/II/III UniProtKB/TrEMBL
  SSF55957 UniProtKB/TrEMBL
UniProt A0A8J8XT82_RAT UniProtKB/TrEMBL
  F7FLB2 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary B1H277 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2007-10-17 Pgm2  phosphoglucomutase 2  Pgm1_predicted  phosphoglucomutase 1 (predicted)  Symbol and Name updated to reflect Human and Mouse nomenclature 1299863 APPROVED
2005-01-12 Pgm1_predicted  phosphoglucomutase 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED