Atp10d (ATPase phospholipid transporting 10D (putative))

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Gene: Atp10d (ATPase phospholipid transporting 10D (putative)) Rattus norvegicus

Analyze

Symbol:

Atp10d

Name:

ATPase phospholipid transporting 10D (putative)

RGD ID:

1588541

Description:

Predicted to enable glycosylceramide flippase activity. Predicted to be involved in phospholipid translocation. Predicted to be located in endoplasmic reticulum and nucleoplasm. Predicted to be part of phospholipid-translocating ATPase complex. Predicted to be active in plasma membrane. Orthologous to human ATP10D (ATPase phospholipid transporting 10D (putative)); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ATPase, class V, type 10D; LOC360932; phospholipid-transporting ATPase VD; probable phospholipid-transporting ATPase VD; similar to Probable phospholipid-transporting ATPase VD (ATPVD)

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ATP10D (ATPase phospholipid transporting 10D (putative))	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Atp10d (ATPase, class V, type 10D)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Atp10d (ATPase phospholipid transporting 10D (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ATP10D (ATPase phospholipid transporting 10D (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ATP10D (ATPase phospholipid transporting 10D (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Atp10d (ATPase phospholipid transporting 10D (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ATP10D (ATPase phospholipid transporting 10D (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ATP10D (ATPase phospholipid transporting 10D (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Atp10d (ATPase phospholipid transporting 10D (putative))	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ATP2B4 (ATPase plasma membrane Ca2+ transporting 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	ATP10D (ATPase phospholipid transporting 10D (putative))	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Atp10d (ATPase, class V, type 10D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	atp10d (ATPase phospholipid transporting 10D)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG33298	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	DNF1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	DNF2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|PhylomeDB)
Caenorhabditis elegans (roundworm):	tat-3	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	tat-4	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	atp10d	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	35,911,728 - 36,012,549 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	35,912,141 - 36,012,564 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	38,475,956 - 38,575,937 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	38,477,330 - 38,575,785 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	38,286,791 - 38,385,764 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	38,340,037 - 38,433,736 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	35,144,020 - 35,242,784 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

choline (ISO)

chromium(6+) (ISO)

cisplatin (EXP)

cyclosporin A (ISO)

cytarabine (ISO)

dichloroacetic acid (ISO)

diethylstilbestrol (EXP)

dimethylarsinic acid (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

elemental selenium (ISO)

entinostat (ISO)

folic acid (ISO)

isoprenaline (ISO)

L-methionine (ISO)

mercury dibromide (ISO)

methylarsonic acid (ISO)

N-nitrosodimethylamine (EXP)

paracetamol (EXP,ISO)

phenethyl isothiocyanate (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

rac-lactic acid (ISO)

rotenone (ISO)

SB 431542 (ISO)

selenium atom (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

Tesaglitazar (EXP)

thioacetamide (EXP)

titanium dioxide (ISO)

trametinib (ISO)

trichloroethene (ISO)

trichostatin A (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

phospholipid translocation (IBA)

Cellular Component

endoplasmic reticulum (ISO)

nucleoplasm (IEA,ISO)

phospholipid-translocating ATPase complex (ISO)

plasma membrane (IBA,ISO)

Molecular Function

ATP binding (IEA)

ATP hydrolysis activity (IEA)

ATPase-coupled intramembrane lipid transporter activity (IBA)

glycosylceramide flippase activity (ISO)

magnesium ion binding (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:21914794

Genomics

Comparative Map Data

Atp10d
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	14	35,911,728 - 36,012,549 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	35,912,141 - 36,012,564 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	14	38,475,956 - 38,575,937 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	38,477,330 - 38,575,785 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	38,286,791 - 38,385,764 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	38,340,037 - 38,433,736 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	35,144,020 - 35,242,784 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

ATP10D
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	47,485,275 - 47,593,486 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	47,485,275 - 47,593,486 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	47,487,292 - 47,595,503 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	47,182,167 - 47,290,260 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	47,328,337 - 47,436,431	NCBI
Celera	4	47,936,627 - 48,044,747 (+)	NCBI		Celera
Cytogenetic Map	4	p12	NCBI
HuRef	4	46,806,888 - 46,915,057 (+)	NCBI		HuRef
CHM1_1	4	47,486,421 - 47,594,454 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	47,452,618 - 47,560,826 (+)	NCBI		T2T-CHM13v2.0

Atp10d
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	72,360,672 - 72,456,114 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	72,360,672 - 72,456,118 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	72,203,329 - 72,298,771 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	72,203,329 - 72,298,775 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	72,594,568 - 72,690,010 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	72,482,478 - 72,590,429 (+)	NCBI		MGSCv36	mm8
Celera	5	69,456,406 - 69,552,109 (+)	NCBI		Celera
Cytogenetic Map	5	C3.2	NCBI
cM Map	5	38.44	NCBI

Atp10d
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	968,495 - 1,072,800 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	972,967 - 1,072,797 (-)	NCBI	ChiLan1.0	ChiLan1.0

ATP10D
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	4	80,529,498 - 80,641,947 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	74,556,104 - 74,668,218 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	85,287,676 - 85,399,406 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	85,287,676 - 85,399,406 (-)	Ensembl	panpan1.1		panPan2

ATP10D
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	43,401,038 - 43,500,254 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	43,401,153 - 43,499,254 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	43,351,188 - 43,450,783 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	44,006,066 - 44,105,242 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	44,006,071 - 44,104,249 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	43,685,508 - 43,785,323 (+)	NCBI		UMICH_Zoey_3.1
UU_Cfam_GSD_1.0	13	44,100,385 - 44,199,519 (+)	NCBI		UU_Cfam_GSD_1.0

Atp10d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	32,557,363 - 32,659,165 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936482	13,639,077 - 13,740,985 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ATP10D
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	37,407,711 - 37,530,373 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	37,407,677 - 37,531,707 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	39,330,073 - 39,415,359 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ATP10D
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	2,664,932 - 2,771,045 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	2,661,899 - 2,771,009 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	48,704,580 - 48,812,248 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Atp10d
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	19,407,954 - 19,527,049 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624761	19,408,249 - 19,527,007 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Atp10d
683 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	47
Count of miRNA genes:	44
Interacting mature miRNAs:	47
Transcripts:	ENSRNOT00000003146
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	9088978	39057237	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
71117	Niddm17	Non-insulin dependent diabetes mellitus QTL 17	2.35		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	17593761	42336881	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17622561	42337007	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18541332	63541332	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18631345	42337007	Rat
10755459	Coatc15	Coat color QTL 15		0.01681	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	14	19836944	64836944	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
2324617	Coatc2	Coat color QTL 2		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	14	30767025	39153750	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat

Markers in Region

RH129002

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	35,911,848 - 35,912,035 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	38,476,077 - 38,476,263	NCBI	Rnor6.0
Rnor_5.0	14	38,286,912 - 38,287,098	UniSTS	Rnor5.0
RGSC_v3.4	14	38,341,979 - 38,342,165	UniSTS	RGSC3.4
Celera	14	35,144,141 - 35,144,327	UniSTS
Cytogenetic Map	14	p11	UniSTS

RH135113

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	35,910,418 - 35,910,597 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	38,474,647 - 38,474,825	NCBI	Rnor6.0
Rnor_5.0	14	38,285,482 - 38,285,660	UniSTS	Rnor5.0
RGSC_v3.4	14	38,340,549 - 38,340,727	UniSTS	RGSC3.4
Celera	14	35,142,711 - 35,142,889	UniSTS
Cytogenetic Map	14	p11	UniSTS

UniSTS:235197

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	35,911,781 - 35,912,033 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	38,476,010 - 38,476,261	NCBI	Rnor6.0
Rnor_5.0	14	38,286,845 - 38,287,096	UniSTS	Rnor5.0
RGSC_v3.4	14	38,341,912 - 38,342,163	UniSTS	RGSC3.4
Celera	14	35,144,074 - 35,144,325	UniSTS
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2	2	10	2	19	2			8	22	34	11
Low	1	41	47	39		39	8	11	66	13	7		8
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008770178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017604861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092719	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000252	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000003146 ⟹ ENSRNOP00000003146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	35,912,141 - 36,012,564 (-)	Ensembl
Rnor_6.0 Ensembl	14	38,477,330 - 38,575,785 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000099677 ⟹ ENSRNOP00000089956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	35,982,359 - 36,012,415 (-)	Ensembl

RefSeq Acc Id:

XM_039092718 ⟹ XP_038948646

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	35,911,728 - 36,012,549 (-)	NCBI

RefSeq Acc Id:

XM_039092719 ⟹ XP_038948647

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	14	35,911,728 - 36,012,549 (-)	NCBI

Protein Sequences


Protein RefSeqs	XP_038948646	(Get FASTA)	NCBI Sequence Viewer
	XP_038948647	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL89999	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003146
	ENSRNOP00000003146.5
	ENSRNOP00000089956.1

RefSeq Acc Id:

ENSRNOP00000003146 ⟸ ENSRNOT00000003146

RefSeq Acc Id:	XP_038948646 ⟸ XM_039092718
- Peptide Label:	isoform X1
- UniProtKB:	D3ZN41 (UniProtKB/TrEMBL), A6JD77 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038948647 ⟸ XM_039092719
- Peptide Label:	isoform X2
- UniProtKB:	A6JD77 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000089956 ⟸ ENSRNOT00000099677

Protein Domains

P-type ATPase C-terminal P-type ATPase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZN41-F1-model_v2	AlphaFold	D3ZN41	1-1468	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699310

Promoter ID:

EPDNEW_R9826

Type:

initiation region

Name:

Atp10d_1

Description:

ATPase phospholipid transporting 10D

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	38,575,872 - 38,575,932	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1588541	AgrOrtholog
BioCyc Gene	G2FUF-15846	BioCyc
Ensembl Genes	ENSRNOG00000002312	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003146	ENTREZGENE
	ENSRNOT00000003146.5	UniProtKB/TrEMBL
	ENSRNOT00000099677.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.1110.10	UniProtKB/TrEMBL
	3.40.50.1000	UniProtKB/TrEMBL
	Calcium-transporting ATPase, cytoplasmic transduction domain A	UniProtKB/TrEMBL
	Calcium-transporting ATPase, transmembrane domain	UniProtKB/TrEMBL
InterPro	ATPase_P-typ_ATPase-assoc-dom	UniProtKB/TrEMBL
	ATPase_P-typ_cyto_domN	UniProtKB/TrEMBL
	ATPase_P-typ_ion-transptr	UniProtKB/TrEMBL
	ATPase_P-typ_P_site	UniProtKB/TrEMBL
	ATPase_P-typ_Plipid-transl	UniProtKB/TrEMBL
	ATPase_P-typ_TM_dom	UniProtKB/TrEMBL
	HAD-like_dom	UniProtKB/TrEMBL
	HAD-like_sf	UniProtKB/TrEMBL
	P-type_ATPase_N	UniProtKB/TrEMBL
	P_typ_ATPase_c	UniProtKB/TrEMBL
	P_typ_ATPase_HD_dom	UniProtKB/TrEMBL
NCBI Gene	360932	ENTREZGENE
PANTHER	PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE	UniProtKB/TrEMBL
	PTHR24092:SF84	UniProtKB/TrEMBL
Pfam	Cation_ATPase	UniProtKB/TrEMBL
	PhoLip_ATPase_C	UniProtKB/TrEMBL
	PhoLip_ATPase_N	UniProtKB/TrEMBL
PhenoGen	Atp10d	PhenoGen
PRINTS	CATATPASE	UniProtKB/TrEMBL
PROSITE	ATPASE_E1_E2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002312	RatGTEx
Superfamily-SCOP	ATPase_cation_domN	UniProtKB/TrEMBL
	HAD-like_dom	UniProtKB/TrEMBL
	SSF81653	UniProtKB/TrEMBL
	SSF81665	UniProtKB/TrEMBL
UniProt	A0A8I6ADJ0_RAT	UniProtKB/TrEMBL
	A6JD77	ENTREZGENE, UniProtKB/TrEMBL
	D3ZN41	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-17	Atp10d	ATPase phospholipid transporting 10D (putative)	Atp10d	ATPase, class V, type 10D	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Atp10d	ATPase, class V, type 10D	LOC360932	similar to Probable phospholipid-transporting ATPase VD (ATPVD)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-19	LOC360932	similar to Probable phospholipid-transporting ATPase VD (ATPVD)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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