Atp10d (ATPase phospholipid transporting 10D (putative)) - Rat Genome Database

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Gene: Atp10d (ATPase phospholipid transporting 10D (putative)) Rattus norvegicus
Analyze
Symbol: Atp10d
Name: ATPase phospholipid transporting 10D (putative)
RGD ID: 1588541
Description: Predicted to enable glycosylceramide flippase activity. Predicted to be involved in phospholipid translocation. Predicted to be located in endoplasmic reticulum and nucleoplasm. Predicted to be part of phospholipid-translocating ATPase complex. Predicted to be active in plasma membrane. Orthologous to human ATP10D (ATPase phospholipid transporting 10D (putative)); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATPase, class V, type 10D; LOC360932; phospholipid-transporting ATPase VD; probable phospholipid-transporting ATPase VD; similar to Probable phospholipid-transporting ATPase VD (ATPVD)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81436,265,696 - 36,366,460 (-)NCBIGRCr8
mRatBN7.21435,911,728 - 36,012,549 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1435,912,141 - 36,012,564 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01438,475,956 - 38,575,937 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1438,477,330 - 38,575,785 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01438,286,791 - 38,385,764 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41438,340,037 - 38,433,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1435,144,020 - 35,242,784 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp10dRatExperimental Liver Cirrhosis  ISOATP10D (Homo sapiens)11554173CTD Direct Evidence: marker/mechanismCTDPMID:25380136

1 to 20 of 84 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp10dRat(-)-epigallocatechin 3-gallate multiple interactionsISOATP10D (Homo sapiens)6480464[potassium chromate(VI) co-treated with epigallocatechin gallate] results in decreased expression of ATP10D mRNACTDPMID:22079256
Atp10dRat1,2-dimethylhydrazine increases expressionISOAtp10d (Mus musculus)64804641 and 2-Dimethylhydrazine results in increased expression of ATP10D mRNACTDPMID:22206623
Atp10dRat17alpha-ethynylestradiol increases expressionEXP 6480464Ethinyl Estradiol results in increased expression of ATP10D mRNACTDPMID:17557909
Atp10dRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOAtp10d (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of ATP10D mRNACTDPMID:21570461
Atp10dRat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of ATP10D mRNACTDPMID:34747641
Atp10dRat2-hydroxypropanoic acid decreases expressionISOATP10D (Homo sapiens)6480464Lactic Acid results in decreased expression of ATP10D mRNACTDPMID:30851411
Atp10dRat2-palmitoylglycerol increases expressionISOATP10D (Homo sapiens)64804642-palmitoylglycerol results in increased expression of ATP10D mRNACTDPMID:37199045
Atp10dRataflatoxin B1 increases expressionISOAtp10d (Mus musculus)6480464Aflatoxin B1 results in increased expression of ATP10D mRNACTDPMID:19770486
Atp10dRataflatoxin B1 increases expressionISOATP10D (Homo sapiens)6480464Aflatoxin B1 results in increased expression of ATP10D mRNACTDPMID:27153756
Atp10dRatall-trans-retinoic acid increases expressionISOATP10D (Homo sapiens)6480464Tretinoin results in increased expression of ATP10D mRNACTDPMID:21934132 and PMID:33167477
Atp10dRatarsane multiple interactionsISOATP10D (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ATP10D mRNACTDPMID:39836092
Atp10dRatarsenic atom multiple interactionsISOATP10D (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of ATP10D mRNACTDPMID:39836092
Atp10dRatbenzo[a]pyrene increases mutagenesisISOATP10D (Homo sapiens)6480464Benzo(a)pyrene results in increased mutagenesis of ATP10D geneCTDPMID:25435355
Atp10dRatbenzo[a]pyrene affects methylationISOATP10D (Homo sapiens)6480464Benzo(a)pyrene affects the methylation of ATP10D 5' UTRCTDPMID:27901495
Atp10dRatbenzo[a]pyrene increases methylationISOAtp10d (Mus musculus)6480464Benzo(a)pyrene results in increased methylation of ATP10D intronCTDPMID:27901495
Atp10dRatbenzo[a]pyrene increases expressionISOAtp10d (Mus musculus)6480464Benzo(a)pyrene results in increased expression of ATP10D mRNACTDPMID:22228805 and PMID:27195522
Atp10dRatbis(2-ethylhexyl) phthalate multiple interactionsISOAtp10d (Mus musculus)6480464[diethyl phthalate co-treated with Diethylhexyl Phthalate co-treated with diisononyl phthalate co-treated with Dibutyl Phthalate co-treated with diisobutyl phthalate co-treated with butylbenzyl phthalate] affects the expression of ATP10D mRNACTDPMID:39150890
Atp10dRatbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of ATP10D mRNACTDPMID:25181051
Atp10dRatbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of ATP10D mRNACTDPMID:34947998
Atp10dRatbisphenol A increases expressionISOAtp10d (Mus musculus)6480464bisphenol A results in increased expression of ATP10D mRNACTDPMID:25594700

1 to 20 of 84 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp10dRatphospholipid translocation involved_inIBACGD:CAL0000173967 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Atp10dRatphospholipid transport involved_inIEAInterPro:IPR0065391600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component
1 to 13 of 13 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp10dRatendoplasmic reticulum located_inISOATP10D (Homo sapiens)1624291 PMID:21914794RGDPMID:21914794
Atp10dRatendoplasmic reticulum located_inIEAUniProtKB:Q9P241 and ensembl:ENSP000002738591600115GO_REF:0000107EnsemblGO_REF:0000107
Atp10dRatmembrane located_inIEAUniProtKB-KW:KW-04721600115GO_REF:0000043UniProtGO_REF:0000043
Atp10dRatmembrane located_inIEAInterPro:IPR001757 and InterPro:IPR0065391600115GO_REF:0000002InterProGO_REF:0000002
Atp10dRatmembrane located_inIEAUniProtKB-SubCell:SL-01621600115GO_REF:0000044UniProtGO_REF:0000044
Atp10dRatnucleoplasm located_inIEAUniProtKB:Q9P241 and ensembl:ENSP000002738591600115GO_REF:0000107EnsemblGO_REF:0000107
Atp10dRatnucleoplasm located_inISOATP10D (Homo sapiens) and UniProtKB:Q9P241-11624291 RGDGO_REF:0000052
Atp10dRatphospholipid-translocating ATPase complex part_ofISOATP10D (Homo sapiens)1624291 PMID:25947375RGDPMID:25947375
Atp10dRatphospholipid-translocating ATPase complex part_ofIEAUniProtKB:Q9P241 and ensembl:ENSP000002738591600115GO_REF:0000107EnsemblGO_REF:0000107
Atp10dRatplasma membrane located_inIEAUniProtKB:Q9P241 and ensembl:ENSP000002738591600115GO_REF:0000107EnsemblGO_REF:0000107
Atp10dRatplasma membrane located_inISOATP10D (Homo sapiens) and UniProtKB:Q9P241-11624291 RGDGO_REF:0000052
Atp10dRatplasma membrane is_active_inIBACGD:CAL0000173967 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Atp10dRatplasma membrane located_inISOATP10D (Homo sapiens)1624291 PMID:25947375RGDPMID:25947375
1 to 13 of 13 rows

Molecular Function
1 to 15 of 15 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Atp10dRatATP binding enablesIEAUniRule:UR0001437631600115GO_REF:0000104UniProtGO_REF:0000104
Atp10dRatATP binding enablesIEAInterPro:IPR001757 and InterPro:IPR0065391600115GO_REF:0000002InterProGO_REF:0000002
Atp10dRatATP binding enablesIEAUniProtKB-KW:KW-00671600115GO_REF:0000043UniProtGO_REF:0000043
Atp10dRatATP hydrolysis activity enablesIEAInterPro:IPR0017571600115GO_REF:0000002InterProGO_REF:0000002
Atp10dRatATPase-coupled intramembrane lipid transporter activity enablesIBACGD:CAL0000173967 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
Atp10dRatATPase-coupled intramembrane lipid transporter activity enablesIEAEC:7.6.2.11600115GO_REF:0000003UniProtGO_REF:0000003
Atp10dRatATPase-coupled intramembrane lipid transporter activity enablesIEAInterPro:IPR0065391600115GO_REF:0000002InterProGO_REF:0000002
Atp10dRatglycosylceramide flippase activity enablesISOATP10D (Homo sapiens)1624291 PMID:30530492RGDPMID:30530492
Atp10dRatglycosylceramide flippase activity enablesIEAUniProtKB:Q9P241 and ensembl:ENSP000002738591600115GO_REF:0000107EnsemblGO_REF:0000107
Atp10dRatmagnesium ion binding enablesIEAUniRule:UR0001437631600115GO_REF:0000104UniProtGO_REF:0000104
Atp10dRatmagnesium ion binding enablesIEAInterPro:IPR0065391600115GO_REF:0000002InterProGO_REF:0000002
Atp10dRatmetal ion binding enablesIEAUniProtKB-KW:KW-04791600115GO_REF:0000043UniProtGO_REF:0000043
Atp10dRatnucleotide binding enablesIEAUniProtKB-KW:KW-05471600115GO_REF:0000043UniProtGO_REF:0000043
Atp10dRatnucleotide binding enablesIEAInterPro:IPR0232991600115GO_REF:0000002InterProGO_REF:0000002
Atp10dRatprotein binding enablesISOATP10D (Homo sapiens)1624291UniProtKB:Q9NV96 more ...RGDPMID:21914794 and PMID:25947375
1 to 15 of 15 rows


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:21914794  



Atp10d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81436,265,696 - 36,366,460 (-)NCBIGRCr8
mRatBN7.21435,911,728 - 36,012,549 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1435,912,141 - 36,012,564 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01438,475,956 - 38,575,937 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1438,477,330 - 38,575,785 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01438,286,791 - 38,385,764 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41438,340,037 - 38,433,736 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1435,144,020 - 35,242,784 (-)NCBICelera
Cytogenetic Map14p11NCBI
ATP10D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38447,485,275 - 47,593,486 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl447,485,275 - 47,593,486 (+)EnsemblGRCh38hg38GRCh38
GRCh37447,487,292 - 47,595,503 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36447,182,167 - 47,290,260 (+)NCBINCBI36Build 36hg18NCBI36
Build 34447,328,337 - 47,436,431NCBI
Celera447,936,627 - 48,044,747 (+)NCBICelera
Cytogenetic Map4p12NCBI
HuRef446,806,888 - 46,915,057 (+)NCBIHuRef
CHM1_1447,486,421 - 47,594,454 (+)NCBICHM1_1
T2T-CHM13v2.0447,452,618 - 47,560,826 (+)NCBIT2T-CHM13v2.0
Atp10d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39572,360,672 - 72,456,114 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl572,360,672 - 72,456,118 (+)EnsemblGRCm39 Ensembl
GRCm38572,203,329 - 72,298,771 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl572,203,329 - 72,298,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv37572,594,568 - 72,690,010 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36572,482,478 - 72,590,429 (+)NCBIMGSCv36mm8
Celera569,456,406 - 69,552,109 (+)NCBICelera
Cytogenetic Map5C3.2NCBI
cM Map538.44NCBI
Atp10d
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955443968,495 - 1,072,800 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955443972,967 - 1,072,797 (-)NCBIChiLan1.0ChiLan1.0
ATP10D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2380,266,169 - 80,380,227 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1480,529,498 - 80,641,947 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0474,556,104 - 74,668,218 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1485,287,676 - 85,399,406 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl485,287,676 - 85,399,406 (-)Ensemblpanpan1.1panPan2
ATP10D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11343,401,038 - 43,500,254 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1343,401,153 - 43,499,254 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1343,351,188 - 43,450,783 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01344,006,066 - 44,105,242 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1344,006,071 - 44,104,249 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11343,685,508 - 43,785,323 (+)NCBIUMICH_Zoey_3.1
UU_Cfam_GSD_1.01344,100,385 - 44,199,519 (+)NCBIUU_Cfam_GSD_1.0
Atp10d
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528532,557,363 - 32,659,165 (-)NCBIHiC_Itri_2
SpeTri2.0NW_00493648213,639,077 - 13,740,985 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP10D
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl837,407,711 - 37,530,373 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1837,407,677 - 37,531,707 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2839,330,073 - 39,415,359 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATP10D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1272,664,932 - 2,771,045 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl272,661,899 - 2,771,009 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604748,704,580 - 48,812,248 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp10d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476119,407,954 - 19,527,049 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476119,408,249 - 19,527,007 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Atp10d
731 total Variants

Predicted Target Of
Summary Value
Count of predictions:47
Count of miRNA genes:44
Interacting mature miRNAs:47
Transcripts:ENSRNOT00000003146
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 15 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142216796767167967Rat

1 to 10 of 15 rows
RH129002  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21435,911,848 - 35,912,035 (+)MAPPERmRatBN7.2
Rnor_6.01438,476,077 - 38,476,263NCBIRnor6.0
Rnor_5.01438,286,912 - 38,287,098UniSTSRnor5.0
RGSC_v3.41438,341,979 - 38,342,165UniSTSRGSC3.4
Celera1435,144,141 - 35,144,327UniSTS
Cytogenetic Map14p11UniSTS
RH135113  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81436,264,386 - 36,264,565 (+)Marker Load Pipeline
mRatBN7.21435,910,418 - 35,910,597 (+)MAPPERmRatBN7.2
Rnor_6.01438,474,647 - 38,474,825NCBIRnor6.0
Rnor_5.01438,285,482 - 38,285,660UniSTSRnor5.0
RGSC_v3.41438,340,549 - 38,340,727UniSTSRGSC3.4
Celera1435,142,711 - 35,142,889UniSTS
Cytogenetic Map14p11UniSTS
UniSTS:235197  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21435,911,781 - 35,912,033 (+)MAPPERmRatBN7.2
Rnor_6.01438,476,010 - 38,476,261NCBIRnor6.0
Rnor_5.01438,286,845 - 38,287,096UniSTSRnor5.0
RGSC_v3.41438,341,912 - 38,342,163UniSTSRGSC3.4
Celera1435,144,074 - 35,144,325UniSTS
Cytogenetic Map14p11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000003146   ⟹   ENSRNOP00000003146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1435,912,141 - 36,012,564 (-)Ensembl
Rnor_6.0 Ensembl1438,477,330 - 38,575,785 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000099677   ⟹   ENSRNOP00000089956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1435,982,359 - 36,012,415 (-)Ensembl
RefSeq Acc Id: NM_001427806   ⟹   NP_001414735
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81436,265,696 - 36,366,460 (-)NCBI
RefSeq Acc Id: XM_063273341   ⟹   XP_063129411
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81436,265,696 - 36,338,926 (-)NCBI
Protein RefSeqs NP_001414735 (Get FASTA)   NCBI Sequence Viewer  
  XP_063129411 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL89999 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000003146
  ENSRNOP00000003146.5
  ENSRNOP00000089956.1
Ensembl Acc Id: ENSRNOP00000003146   ⟸   ENSRNOT00000003146
Ensembl Acc Id: ENSRNOP00000089956   ⟸   ENSRNOT00000099677
RefSeq Acc Id: NP_001414735   ⟸   NM_001427806
- UniProtKB: D3ZN41 (UniProtKB/TrEMBL),   A6JD77 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129411   ⟸   XM_063273341
- Peptide Label: isoform X1
- UniProtKB: A6JD77 (UniProtKB/TrEMBL)
P-type ATPase C-terminal   P-type ATPase N-terminal

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZN41-F1-model_v2 AlphaFold D3ZN41 1-1468 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13699310
Promoter ID:EPDNEW_R9826
Type:initiation region
Name:Atp10d_1
Description:ATPase phospholipid transporting 10D
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01438,575,872 - 38,575,932EPDNEW


1 to 37 of 37 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-15846 BioCyc
Ensembl Genes ENSRNOG00000002312 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003146 ENTREZGENE
  ENSRNOT00000003146.5 UniProtKB/TrEMBL
  ENSRNOT00000099677.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
  Calcium-transporting ATPase, transmembrane domain UniProtKB/TrEMBL
InterPro ATPase_P-typ_ATPase-assoc-dom UniProtKB/TrEMBL
  ATPase_P-typ_cyto_domN UniProtKB/TrEMBL
  ATPase_P-typ_ion-transptr UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_Plipid-transl UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene 360932 ENTREZGENE
PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
  PTHR24092:SF84 UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/TrEMBL
PhenoGen Atp10d PhenoGen
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002312 RatGTEx
Superfamily-SCOP ATPase_cation_domN UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A8I6ADJ0_RAT UniProtKB/TrEMBL
  A6JD77 ENTREZGENE, UniProtKB/TrEMBL
  D3ZN41 ENTREZGENE, UniProtKB/TrEMBL
1 to 37 of 37 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp10d  ATPase phospholipid transporting 10D (putative)  Atp10d  ATPase, class V, type 10D  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Atp10d  ATPase, class V, type 10D  LOC360932  similar to Probable phospholipid-transporting ATPase VD (ATPVD)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC360932  similar to Probable phospholipid-transporting ATPase VD (ATPVD)      Symbol and Name status set to provisional 70820 PROVISIONAL