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Gene: Limch1 (LIM and calponin homology domains 1) Rattus norvegicus
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Symbol: Limch1
Name: LIM and calponin homology domains 1
Description: Predicted to have myosin II head/neck binding activity. Predicted to be involved in several processes, including positive regulation of protein phosphorylation; positive regulation of stress fiber assembly; and regulation of focal adhesion assembly. Predicted to colocalize with the myosin II complex. Orthologous to human LIMCH1 (LIM and calponin homology domains 1); INTERACTS WITH (+)-schisandrin B; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LIM and calponin homology domains-containing protein 1; LOC305332; RGD1305269; similar to hypothetical protein
Orthologs:
Homo sapiens (human) : LIMCH1 (LIM and calponin homology domains 1)  HGNC  Alliance
Mus musculus (house mouse) : Limch1 (LIM and calponin homology domains 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Limch1 (LIM and calponin homology domains 1)
Pan paniscus (bonobo/pygmy chimpanzee) : LIMCH1 (LIM and calponin homology domains 1)
Canis lupus familiaris (dog) : LIMCH1 (LIM and calponin homology domains 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Limch1 (LIM and calponin homology domains 1)
Sus scrofa (pig) : LIMCH1 (LIM and calponin homology domains 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.01442,760,363 - 43,072,976 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,762,587 - 43,072,843 (-)Ensembl
Rnor_5.01442,558,732 - 42,868,387 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41443,722,254 - 44,049,555 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11443,681,141 - 44,052,100 (-)NCBI
Celera1440,270,045 - 40,579,190 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Limch1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1305269
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-11-27
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.