Anapc4 (anaphase promoting complex subunit 4) - Rat Genome Database

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Gene: Anapc4 (anaphase promoting complex subunit 4) Rattus norvegicus
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Symbol: Anapc4
Name: anaphase promoting complex subunit 4
RGD ID: 1306572
Description: Predicted to enable protein phosphatase binding activity. Predicted to be involved in anaphase-promoting complex-dependent catabolic process and protein polyubiquitination. Predicted to be located in nucleus. Predicted to be part of anaphase-promoting complex. Predicted to be active in nuclear periphery. Orthologous to human ANAPC4 (anaphase promoting complex subunit 4); PARTICIPATES IN cell cycle pathway, mitotic; ubiquitin/proteasome degradation pathway; INTERACTS WITH 2,4-dinitrotoluene; 2,6-dinitrotoluene; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: anaphase-promoting complex subunit 4; LOC305420
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81462,338,798 - 62,370,572 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1462,338,798 - 62,370,572 (-)EnsemblGRCr8
mRatBN7.21458,125,995 - 58,159,253 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1458,125,995 - 58,157,770 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1462,531,803 - 62,563,517 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01463,845,907 - 63,877,674 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01460,242,664 - 60,274,431 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01460,471,962 - 60,503,803 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1460,471,962 - 60,503,803 (-)Ensemblrn6Rnor6.0
Rnor_5.01460,589,356 - 60,621,597 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41462,879,772 - 62,911,465 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1457,225,366 - 57,257,057 (-)NCBICelera
RGSC_v3.11462,882,490 - 62,913,803 (-)NCBI
Cytogenetic Map14q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16364912   PMID:18485873   PMID:21241890   PMID:21926987   PMID:22871113  


Genomics

Comparative Map Data
Anapc4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81462,338,798 - 62,370,572 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1462,338,798 - 62,370,572 (-)EnsemblGRCr8
mRatBN7.21458,125,995 - 58,159,253 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1458,125,995 - 58,157,770 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1462,531,803 - 62,563,517 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01463,845,907 - 63,877,674 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01460,242,664 - 60,274,431 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01460,471,962 - 60,503,803 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1460,471,962 - 60,503,803 (-)Ensemblrn6Rnor6.0
Rnor_5.01460,589,356 - 60,621,597 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41462,879,772 - 62,911,465 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1457,225,366 - 57,257,057 (-)NCBICelera
RGSC_v3.11462,882,490 - 62,913,803 (-)NCBI
Cytogenetic Map14q11NCBI
ANAPC4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38425,377,263 - 25,418,498 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl425,377,263 - 25,418,498 (+)Ensemblhg38GRCh38
GRCh37425,378,885 - 25,420,120 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36424,987,946 - 25,029,218 (+)NCBIBuild 36Build 36hg18NCBI36
Build 34425,055,116 - 25,096,388NCBI
Celera425,827,551 - 25,868,815 (+)NCBICelera
Cytogenetic Map4p15.2NCBI
HuRef424,719,025 - 24,760,288 (+)NCBIHuRef
CHM1_1425,378,460 - 25,419,732 (+)NCBICHM1_1
T2T-CHM13v2.0425,359,068 - 25,400,297 (+)NCBIT2T-CHM13v2.0
Anapc4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39552,991,477 - 53,024,076 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl552,991,354 - 53,025,139 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38552,834,135 - 52,866,734 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl552,834,012 - 52,867,797 (+)Ensemblmm10GRCm38
MGSCv37553,225,374 - 53,257,973 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36553,122,383 - 53,154,982 (+)NCBIMGSCv36mm8
Celera550,211,245 - 50,243,925 (+)NCBICelera
Cytogenetic Map5C1NCBI
cM Map528.81NCBI
Anapc4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544319,620,480 - 19,653,200 (-)Ensembl
ChiLan1.0NW_00495544319,620,480 - 19,653,179 (-)NCBIChiLan1.0ChiLan1.0
ANAPC4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2325,628,089 - 25,667,796 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1425,821,150 - 25,860,847 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0419,777,750 - 19,817,459 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1425,061,715 - 25,101,386 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl425,061,930 - 25,101,260 (+)EnsemblpanPan2panpan1.1
ANAPC4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1384,878,686 - 84,914,876 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl384,878,693 - 84,914,882 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha387,391,671 - 87,427,899 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0385,851,958 - 85,888,197 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl385,851,964 - 85,888,044 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1384,985,804 - 85,022,014 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0385,091,368 - 85,127,587 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0385,476,904 - 85,513,179 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Anapc4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528550,432,788 - 50,464,823 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364774,134,403 - 4,166,537 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364774,134,449 - 4,166,496 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANAPC4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl819,301,248 - 19,341,478 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1819,301,253 - 19,341,463 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ANAPC4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12724,947,516 - 24,989,331 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2724,946,681 - 24,989,208 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604771,462,966 - 71,505,053 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anapc4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247557,013,763 - 7,047,424 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247557,013,769 - 7,047,292 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Anapc4
152 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:413
Count of miRNA genes:230
Interacting mature miRNAs:274
Transcripts:ENSRNOT00000006093
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
7387267Uae42Urinary albumin excretion QTL 420.61urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)142216796767167967Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat

Markers in Region
D14Rat122  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr81462,338,675 - 62,338,888 (+)Marker Load Pipeline
mRatBN7.21458,125,872 - 58,126,077 (+)MAPPERmRatBN7.2
Rnor_6.01460,471,742 - 60,472,052NCBIRnor6.0
Rnor_5.01460,589,136 - 60,589,446UniSTSRnor5.0
RGSC_v3.41462,879,596 - 62,879,862UniSTSRGSC3.4
Celera1457,225,266 - 57,225,456UniSTS
RGSC_v3.11462,881,986 - 62,882,254RGD
SHRSP x BN Map1428.34UniSTS
SHRSP x BN Map1428.34RGD
Cytogenetic Map14q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006093   ⟹   ENSRNOP00000006093
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1462,338,798 - 62,370,572 (-)Ensembl
mRatBN7.2 Ensembl1458,125,995 - 58,157,770 (-)Ensembl
Rnor_6.0 Ensembl1460,471,962 - 60,503,803 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000118640   ⟹   ENSRNOP00000078116
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1462,338,798 - 62,370,572 (-)Ensembl
mRatBN7.2 Ensembl1458,125,995 - 58,157,770 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000165179   ⟹   ENSRNOP00000106687
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1462,338,798 - 62,370,572 (-)Ensembl
RefSeq Acc Id: NM_001107220   ⟹   NP_001100690
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81462,338,798 - 62,370,572 (-)NCBI
mRatBN7.21458,125,995 - 58,157,770 (-)NCBI
Rnor_6.01460,471,962 - 60,503,803 (-)NCBI
Rnor_5.01460,589,356 - 60,621,597 (-)NCBI
RGSC_v3.41462,879,772 - 62,911,465 (-)RGD
Celera1457,225,366 - 57,257,057 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100690 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL99880 (Get FASTA)   NCBI Sequence Viewer  
  EDL99881 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000006093
  ENSRNOP00000006093.3
  ENSRNOP00000078116.1
RefSeq Acc Id: NP_001100690   ⟸   NM_001107220
- UniProtKB: D3ZUB7 (UniProtKB/TrEMBL),   A6IJG7 (UniProtKB/TrEMBL),   A0A8I5ZJP1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000006093   ⟸   ENSRNOT00000006093
Ensembl Acc Id: ENSRNOP00000078116   ⟸   ENSRNOT00000118640
Ensembl Acc Id: ENSRNOP00000106687   ⟸   ENSRNOT00000165179
Protein Domains
Anaphase-promoting complex subunit 4 C-terminal half   Anaphase-promoting complex subunit 4 long   Anaphase-promoting complex subunit 4-like WD40

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUB7-F1-model_v2 AlphaFold D3ZUB7 1-807 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699331
Promoter ID:EPDNEW_R9856
Type:initiation region
Name:Anapc4_1
Description:anaphase promoting complex subunit 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01460,503,747 - 60,503,807EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306572 AgrOrtholog
BioCyc Gene G2FUF-15601 BioCyc
Ensembl Genes ENSRNOG00000004130 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006093 ENTREZGENE
  ENSRNOT00000006093.5 UniProtKB/TrEMBL
  ENSRNOT00000118640.1 UniProtKB/TrEMBL
Gene3D-CATH 2.130.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7134721 IMAGE-MGC_LOAD
InterPro APC4 UniProtKB/TrEMBL
  APC4 UniProtKB/TrEMBL
  APC4_C UniProtKB/TrEMBL
  APC4_long_dom UniProtKB/TrEMBL
  Apc4_WD40_dom UniProtKB/TrEMBL
  WD40/YVTN_repeat-like_dom UniProtKB/TrEMBL
  WD40_repeat_dom_sf UniProtKB/TrEMBL
KEGG Report rno:305420 UniProtKB/TrEMBL
MGC_CLONE MGC:105901 IMAGE-MGC_LOAD
NCBI Gene 305420 ENTREZGENE
PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 4 UniProtKB/TrEMBL
  PTHR13260 UniProtKB/TrEMBL
Pfam Apc4 UniProtKB/TrEMBL
  Apc4_WD40 UniProtKB/TrEMBL
  WD40_APC4_C-half UniProtKB/TrEMBL
PhenoGen Anapc4 PhenoGen
PIRSF APC4 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000004130 RatGTEx
Superfamily-SCOP WD40_like UniProtKB/TrEMBL
UniProt A0A8I5ZJP1 ENTREZGENE, UniProtKB/TrEMBL
  A6IJG7 ENTREZGENE, UniProtKB/TrEMBL
  A6IJG8_RAT UniProtKB/TrEMBL
  D3ZUB7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Anapc4  anaphase promoting complex subunit 4  Anapc4_predicted  anaphase promoting complex subunit 4 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Anapc4_predicted  anaphase promoting complex subunit 4 (predicted)      Symbol and Name status set to approved 70820 APPROVED