Adgrl3 (adhesion G protein-coupled receptor L3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Adgrl3 (adhesion G protein-coupled receptor L3) Rattus norvegicus
Analyze
Symbol: Adgrl3
Name: adhesion G protein-coupled receptor L3
RGD ID: 620836
Description: Predicted to enable G protein-coupled receptor activity and calcium ion binding activity. Involved in brain development. Predicted to be integral component of membrane. Predicted to be active in axon; cell-cell junction; and glutamatergic synapse. Predicted to be integral component of plasma membrane. Orthologous to human ADGRL3 (adhesion G protein-coupled receptor L3); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: calcium-independent alpha-latrotoxin receptor 3; calcium-independent alpha-latrotoxin receptor homolog 3; CIRL-3; Cirl3; latrophilin 3; latrophilin-3; Lec3; lectomedin-3; Lphn3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: Adgrl3Tn(sb-T2/Bart3)2.151Mcwi   Adgrl3em1Huyc  
Genetic Models: SD-Adgrl3em1Huyc F344-Adgrl3Tn(sb-T2/Bart3)2.151Mcwi
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21426,336,320 - 27,104,060 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1426,368,277 - 27,105,860 (-)Ensembl
Rnor_6.01428,362,176 - 29,226,085 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1428,393,394 - 28,967,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01428,183,727 - 29,040,121 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41428,385,112 - 28,854,677 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11428,385,120 - 28,854,677 (-)NCBI
Celera1425,731,451 - 26,185,004 (-)NCBICelera
Cytogenetic Map14p21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Involvement of the calcium-independent receptor for alpha-latrotoxin in brain ischemia. Bin Sun H, etal., Brain Res Mol Brain Res. 2002 Aug 15;104(2):246-9.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. A novel ubiquitously expressed alpha-latrotoxin receptor is a member of the CIRL family of G-protein-coupled receptors. Ichtchenko K, etal., J Biol Chem 1999 Feb 26;274(9):5491-8.
4. The calcium-independent receptor for alpha-latrotoxin from human and rodent brains interacts with members of the ProSAP/SSTRIP/Shank family of multidomain proteins. Kreienkamp HJ, etal., J Biol Chem. 2000 Oct 20;275(42):32387-90.
5. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
6. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
7. Knockout of latrophilin-3 in Sprague-Dawley rats causes hyperactivity, hyper-reactivity, under-response to amphetamine, and disrupted dopamine markers. Regan SL, etal., Neurobiol Dis. 2019 Oct;130:104494. doi: 10.1016/j.nbd.2019.104494. Epub 2019 Jun 6.
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
10. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9830014   PMID:22405201   PMID:22575564   PMID:24613359   PMID:24739570   PMID:25728924   PMID:25931508   PMID:26235030   PMID:26235031   PMID:32203648   PMID:34352385  


Genomics

Comparative Map Data
Adgrl3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21426,336,320 - 27,104,060 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1426,368,277 - 27,105,860 (-)Ensembl
Rnor_6.01428,362,176 - 29,226,085 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1428,393,394 - 28,967,980 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01428,183,727 - 29,040,121 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41428,385,112 - 28,854,677 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11428,385,120 - 28,854,677 (-)NCBI
Celera1425,731,451 - 26,185,004 (-)NCBICelera
Cytogenetic Map14p21NCBI
ADGRL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38461,200,326 - 62,078,335 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl461,200,326 - 62,078,335 (+)EnsemblGRCh38hg38GRCh38
GRCh37462,066,044 - 62,944,053 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36462,045,434 - 62,620,763 (+)NCBINCBI36hg18NCBI36
Build 34462,191,604 - 62,766,933NCBI
Celera459,821,669 - 60,396,265 (+)NCBI
Cytogenetic Map4q13.1NCBI
HuRef458,271,407 - 58,846,164 (+)NCBIHuRef
CHM1_1462,398,708 - 62,974,117 (+)NCBICHM1_1
T2T-CHM13v2.0464,638,264 - 65,515,643 (+)NCBI
Adgrl3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39581,167,600 - 81,980,556 (+)NCBIGRCm39mm39
GRCm39 Ensembl581,167,985 - 81,972,980 (+)Ensembl
GRCm38581,019,085 - 81,827,825 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl581,020,138 - 81,825,133 (+)EnsemblGRCm38mm10GRCm38
MGSCv37581,450,618 - 82,224,755 (+)NCBIGRCm37mm9NCBIm37
MGSCv36582,096,154 - 82,870,291 (+)NCBImm8
Celera578,280,126 - 79,039,754 (+)NCBICelera
Cytogenetic Map5D- E1NCBI
Adgrl3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554479,943,598 - 10,709,008 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554479,912,679 - 10,708,743 (-)NCBIChiLan1.0ChiLan1.0
ADGRL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1468,315,996 - 69,183,881 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl468,323,404 - 69,003,093 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0461,876,694 - 62,742,354 (-)NCBIMhudiblu_PPA_v0panPan3
ADGRL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11352,742,043 - 53,568,184 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1352,909,684 - 53,538,625 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1352,651,031 - 53,476,080 (+)NCBI
ROS_Cfam_1.01353,378,322 - 54,210,364 (+)NCBI
ROS_Cfam_1.0 Ensembl1353,378,109 - 54,181,953 (+)Ensembl
UMICH_Zoey_3.11353,058,300 - 53,887,839 (+)NCBI
UNSW_CanFamBas_1.01352,577,693 - 53,373,845 (+)NCBI
UU_Cfam_GSD_1.01353,501,337 - 54,367,460 (+)NCBI
Adgrl3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528522,750,332 - 23,528,212 (-)NCBI
SpeTri2.0NW_0049365825,313,215 - 6,091,351 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ADGRL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl860,630,117 - 60,792,899 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1859,988,280 - 60,800,177 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ADGRL3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.176,726,400 - 7,261,059 (-)NCBIChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660667,000,551 - 7,860,788 (-)NCBIVero_WHO_p1.0
Adgrl3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247617,242,948 - 7,804,418 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247617,219,269 - 8,101,988 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
D14Rat41  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21426,585,205 - 26,585,343 (+)MAPPERmRatBN7.2
Rnor_6.01428,610,223 - 28,610,358NCBIRnor6.0
Rnor_5.01428,430,315 - 28,430,450UniSTSRnor5.0
RGSC_v3.41428,613,332 - 28,613,468RGDRGSC3.4
RGSC_v3.41428,613,333 - 28,613,468UniSTSRGSC3.4
RGSC_v3.11428,613,272 - 28,613,579RGD
Celera1425,946,331 - 25,946,466UniSTS
SHRSP x BN Map1415.94UniSTS
SHRSP x BN Map1415.94RGD
FHH x ACI Map1426.22RGD
Cytogenetic Map14p21UniSTS
RH131601  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21426,632,977 - 26,633,164 (+)MAPPERmRatBN7.2
Rnor_6.01428,660,581 - 28,660,767NCBIRnor6.0
Rnor_5.01428,478,328 - 28,478,514UniSTSRnor5.0
RGSC_v3.41428,661,008 - 28,661,194UniSTSRGSC3.4
Celera1425,994,511 - 25,994,697UniSTS
RH 3.4 Map14337.9UniSTS
Cytogenetic Map14p21UniSTS
RH144064  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21426,374,479 - 26,374,617 (+)MAPPERmRatBN7.2
Rnor_6.01428,398,820 - 28,398,957NCBIRnor6.0
Rnor_5.01428,220,371 - 28,220,508UniSTSRnor5.0
RGSC_v3.41428,391,019 - 28,391,156UniSTSRGSC3.4
RGSC_v3.41428,316,659 - 28,316,796UniSTSRGSC3.4
Celera1425,737,358 - 25,737,495UniSTS
RH 3.4 Map14338.4UniSTS
Cytogenetic Map14p21UniSTS
BF397398  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21426,582,800 - 26,582,934 (+)MAPPERmRatBN7.2
Rnor_6.01428,607,818 - 28,607,951NCBIRnor6.0
Rnor_5.01428,427,910 - 28,428,043UniSTSRnor5.0
RGSC_v3.41428,610,928 - 28,611,061UniSTSRGSC3.4
Celera1425,943,926 - 25,944,059UniSTS
RH 3.4 Map14336.8UniSTS
Cytogenetic Map14p21UniSTS
BE107836  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21426,574,328 - 26,574,479 (+)MAPPERmRatBN7.2
Rnor_6.01428,599,348 - 28,599,498NCBIRnor6.0
Rnor_5.01428,419,440 - 28,419,590UniSTSRnor5.0
RGSC_v3.41428,602,458 - 28,602,608UniSTSRGSC3.4
RH 3.4 Map14340.3UniSTS
Cytogenetic Map14p21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat


Genetic Models
This gene Adgrl3 is modified in the following models/strains
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:317
Count of miRNA genes:180
Interacting mature miRNAs:210
Transcripts:ENSRNOT00000044659, ENSRNOT00000048175, ENSRNOT00000059942
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 6 66 6 21 11
Low 3 39 45 29 13 29 8 8 8 29 20 8
Below cutoff 4 12 12 12 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_130822 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769968 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769969 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769971 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769982 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008769986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599061 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091577 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091578 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091581 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091582 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039091589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AF063103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081155 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081157 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081158 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF081159 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000044659   ⟹   ENSRNOP00000045365
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1426,369,223 - 27,105,860 (-)Ensembl
Rnor_6.0 Ensembl1428,393,563 - 28,856,214 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000048175   ⟹   ENSRNOP00000039467
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1426,369,054 - 27,105,860 (-)Ensembl
Rnor_6.0 Ensembl1428,394,103 - 28,967,980 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000059942   ⟹   ENSRNOP00000056687
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1426,369,054 - 27,105,860 (-)Ensembl
Rnor_6.0 Ensembl1428,393,394 - 28,536,260 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100277   ⟹   ENSRNOP00000096360
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1426,368,584 - 27,105,860 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103416   ⟹   ENSRNOP00000084026
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1426,369,054 - 27,105,860 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000106702   ⟹   ENSRNOP00000092249
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1426,368,277 - 27,105,860 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112088   ⟹   ENSRNOP00000083229
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1426,369,054 - 27,105,860 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112583   ⟹   ENSRNOP00000076473
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1426,369,054 - 27,105,860 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000112920   ⟹   ENSRNOP00000079850
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1426,368,277 - 27,105,860 (-)Ensembl
RefSeq Acc Id: NM_130822   ⟹   NP_570835
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,368,573 - 26,824,444 (-)NCBI
Rnor_6.01428,392,913 - 28,856,315 (-)NCBI
Rnor_5.01428,183,727 - 29,040,121 (-)NCBI
RGSC_v3.41428,385,112 - 28,854,677 (-)RGD
Celera1425,731,451 - 26,185,004 (-)RGD
Sequence:
RefSeq Acc Id: XM_008769968   ⟹   XP_008768190
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,059 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769969   ⟹   XP_008768191
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,060 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769970   ⟹   XP_008768192
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,059 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769971   ⟹   XP_008768193
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,058 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769972   ⟹   XP_008768194
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,060 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769973   ⟹   XP_008768195
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,058 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769974   ⟹   XP_008768196
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,058 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769975   ⟹   XP_008768197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,057 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769976   ⟹   XP_008768198
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,056 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769977   ⟹   XP_008768199
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,059 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769978   ⟹   XP_008768200
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,056 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769979   ⟹   XP_008768201
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,056 (-)NCBI
Rnor_6.01428,386,354 - 29,226,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769980   ⟹   XP_008768202
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,369,866 - 27,104,059 (-)NCBI
Rnor_6.01428,394,203 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769981   ⟹   XP_008768203
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,629 - 27,104,058 (-)NCBI
Rnor_6.01428,386,354 - 29,226,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769982   ⟹   XP_008768204
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,369,866 - 27,104,057 (-)NCBI
Rnor_6.01428,394,203 - 29,226,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769983   ⟹   XP_008768205
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,629 - 27,104,056 (-)NCBI
Rnor_6.01428,386,354 - 29,226,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769984   ⟹   XP_008768206
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,336,320 - 27,104,057 (-)NCBI
Rnor_6.01428,362,176 - 29,226,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769985   ⟹   XP_008768207
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,629 - 27,104,058 (-)NCBI
Rnor_6.01428,386,354 - 29,226,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_008769986   ⟹   XP_008768208
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,629 - 27,104,056 (-)NCBI
Rnor_6.01428,386,354 - 29,226,084 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599058   ⟹   XP_017454547
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,059 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599059   ⟹   XP_017454548
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,059 (-)NCBI
Rnor_6.01428,386,354 - 29,226,085 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039091574   ⟹   XP_038947502
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,103,201 (-)NCBI
RefSeq Acc Id: XM_039091575   ⟹   XP_038947503
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,059 (-)NCBI
RefSeq Acc Id: XM_039091576   ⟹   XP_038947504
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,060 (-)NCBI
RefSeq Acc Id: XM_039091577   ⟹   XP_038947505
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,369,223 - 27,104,060 (-)NCBI
RefSeq Acc Id: XM_039091578   ⟹   XP_038947506
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,058 (-)NCBI
RefSeq Acc Id: XM_039091579   ⟹   XP_038947507
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,056 (-)NCBI
RefSeq Acc Id: XM_039091580   ⟹   XP_038947508
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,057 (-)NCBI
RefSeq Acc Id: XM_039091581   ⟹   XP_038947509
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,058 (-)NCBI
RefSeq Acc Id: XM_039091582   ⟹   XP_038947510
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,056 (-)NCBI
RefSeq Acc Id: XM_039091583   ⟹   XP_038947511
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,367,627 - 27,104,058 (-)NCBI
RefSeq Acc Id: XM_039091584   ⟹   XP_038947512
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,369,866 - 27,104,059 (-)NCBI
RefSeq Acc Id: XM_039091585   ⟹   XP_038947513
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,369,866 - 27,104,057 (-)NCBI
RefSeq Acc Id: XM_039091586   ⟹   XP_038947514
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,369,866 - 27,104,058 (-)NCBI
RefSeq Acc Id: XM_039091587   ⟹   XP_038947515
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,369,866 - 27,104,056 (-)NCBI
RefSeq Acc Id: XM_039091588   ⟹   XP_038947516
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,369,866 - 27,104,057 (-)NCBI
RefSeq Acc Id: XM_039091589   ⟹   XP_038947517
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21426,383,761 - 27,104,057 (-)NCBI
Protein Sequences
Protein RefSeqs NP_570835 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768190 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768191 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768192 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768193 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768194 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768195 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768196 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768197 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768198 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768199 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768200 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768201 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768202 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768203 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768204 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768205 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768206 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768207 (Get FASTA)   NCBI Sequence Viewer  
  XP_008768208 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454547 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454548 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947502 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947503 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947504 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947505 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947506 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947507 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947508 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947509 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947510 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947511 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947512 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947513 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947514 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947515 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947516 (Get FASTA)   NCBI Sequence Viewer  
  XP_038947517 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAC62660 (Get FASTA)   NCBI Sequence Viewer  
  AAC62661 (Get FASTA)   NCBI Sequence Viewer  
  AAC62662 (Get FASTA)   NCBI Sequence Viewer  
  AAC62663 (Get FASTA)   NCBI Sequence Viewer  
  AAC62664 (Get FASTA)   NCBI Sequence Viewer  
  AAC62665 (Get FASTA)   NCBI Sequence Viewer  
  AAC77816 (Get FASTA)   NCBI Sequence Viewer  
  EDL89856 (Get FASTA)   NCBI Sequence Viewer  
  EDL89857 (Get FASTA)   NCBI Sequence Viewer  
  EDL89858 (Get FASTA)   NCBI Sequence Viewer  
  EDL89859 (Get FASTA)   NCBI Sequence Viewer  
  EDL89860 (Get FASTA)   NCBI Sequence Viewer  
  EDL89861 (Get FASTA)   NCBI Sequence Viewer  
  EDL89862 (Get FASTA)   NCBI Sequence Viewer  
  EDL89863 (Get FASTA)   NCBI Sequence Viewer  
  EDL89864 (Get FASTA)   NCBI Sequence Viewer  
  Q9Z173 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_570835   ⟸   NM_130822
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: XP_008768206   ⟸   XM_008769984
- Peptide Label: isoform X29
- Sequence:
RefSeq Acc Id: XP_008768201   ⟸   XM_008769979
- Peptide Label: isoform X21
- Sequence:
RefSeq Acc Id: XP_008768199   ⟸   XM_008769977
- Peptide Label: isoform X17
- Sequence:
RefSeq Acc Id: XP_008768191   ⟸   XM_008769969
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008768200   ⟸   XM_008769978
- Peptide Label: isoform X18
- Sequence:
RefSeq Acc Id: XP_008768194   ⟸   XM_008769972
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_008768198   ⟸   XM_008769976
- Peptide Label: isoform X13
- Sequence:
RefSeq Acc Id: XP_008768195   ⟸   XM_008769973
- Peptide Label: isoform X9
- Sequence:
RefSeq Acc Id: XP_008768193   ⟸   XM_008769971
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_008768203   ⟸   XM_008769981
- Peptide Label: isoform X24
- Sequence:
RefSeq Acc Id: XP_008768197   ⟸   XM_008769975
- Peptide Label: isoform X11
- Sequence:
RefSeq Acc Id: XP_008768196   ⟸   XM_008769974
- Peptide Label: isoform X10
- Sequence:
RefSeq Acc Id: XP_008768192   ⟸   XM_008769970
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_008768190   ⟸   XM_008769968
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_008768208   ⟸   XM_008769986
- Peptide Label: isoform X34
- Sequence:
RefSeq Acc Id: XP_008768207   ⟸   XM_008769985
- Peptide Label: isoform X33
- Sequence:
RefSeq Acc Id: XP_008768205   ⟸   XM_008769983
- Peptide Label: isoform X28
- Sequence:
RefSeq Acc Id: XP_008768202   ⟸   XM_008769980
- Peptide Label: isoform X22
- Sequence:
RefSeq Acc Id: XP_008768204   ⟸   XM_008769982
- Peptide Label: isoform X25
- Sequence:
RefSeq Acc Id: XP_017454548   ⟸   XM_017599059
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017454547   ⟸   XM_017599058
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000056687   ⟸   ENSRNOT00000059942
RefSeq Acc Id: ENSRNOP00000039467   ⟸   ENSRNOT00000048175
RefSeq Acc Id: ENSRNOP00000045365   ⟸   ENSRNOT00000044659
RefSeq Acc Id: XP_038947504   ⟸   XM_039091576
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038947503   ⟸   XM_039091575
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947511   ⟸   XM_039091583
- Peptide Label: isoform X20
RefSeq Acc Id: XP_038947509   ⟸   XM_039091581
- Peptide Label: isoform X16
RefSeq Acc Id: XP_038947506   ⟸   XM_039091578
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038947508   ⟸   XM_039091580
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038947510   ⟸   XM_039091582
- Peptide Label: isoform X19
RefSeq Acc Id: XP_038947507   ⟸   XM_039091579
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038947502   ⟸   XM_039091574
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038947505   ⟸   XM_039091577
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038947512   ⟸   XM_039091584
- Peptide Label: isoform X23
RefSeq Acc Id: XP_038947514   ⟸   XM_039091586
- Peptide Label: isoform X27
RefSeq Acc Id: XP_038947513   ⟸   XM_039091585
- Peptide Label: isoform X26
RefSeq Acc Id: XP_038947516   ⟸   XM_039091588
- Peptide Label: isoform X31
RefSeq Acc Id: XP_038947515   ⟸   XM_039091587
- Peptide Label: isoform X30
RefSeq Acc Id: XP_038947517   ⟸   XM_039091589
- Peptide Label: isoform X32
RefSeq Acc Id: ENSRNOP00000079850   ⟸   ENSRNOT00000112920
RefSeq Acc Id: ENSRNOP00000084026   ⟸   ENSRNOT00000103416
RefSeq Acc Id: ENSRNOP00000096360   ⟸   ENSRNOT00000100277
RefSeq Acc Id: ENSRNOP00000076473   ⟸   ENSRNOT00000112583
RefSeq Acc Id: ENSRNOP00000083229   ⟸   ENSRNOT00000112088
RefSeq Acc Id: ENSRNOP00000092249   ⟸   ENSRNOT00000106702
Protein Domains
GPS   Olfactomedin-like   SUEL-type lectin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z173-F1-model_v2 AlphaFold Q9Z173 1-1550 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Damaging Variants


Assembly: Rnor_6.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
14 28465866 28465867 C T snv CDS
14 28535975 28535976 G A snv CDR, CDS, ACI/EurMcwi (MCW), COP/CrCrl (MCW & UW), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), ACI/N (MCW), Buf/N (MCW), F344/NRrrc (MCW), M520/N (MCW), MR/N (MCW), WKY/N (MCW), WN/N (MCW), ACI/EurMcwi (RGD), BBDP/Wor (RGD), F344/NCrl (RGD), GK/Ox (RGD), LE/Stm (RGD), LEW/Crl (RGD), LEW/NCrlBR (RGD), LH/MavRrrc (RGD), LN/MavRrrc (RGD), LL/MavRrrc (RGD), MHS/Gib (RGD), SBH/Ygl (RGD), SHR/NHsd (RGD), SHRSP/Gcrc (RGD), SR/JrHsd (RGD), SS/Jr (RGD), SS/JrHsdMcwi (RGD), WKY/NCrl (RGD), WKY/Gcrc (RGD), WKY/NHsd (RGD), ACI/EurMcwi (2019), ACI/N (2020), BUF/N (2020), BXH3/CubMcwi (2020), DA/OlaHsd (2019), F344/DuCrl (2019), F344/NCrl (2019), F344/N (2020), F344/Stm (2019), FXLE16/Stm (2020), FXLE18/Stm (2020), GK/FarMcwi (2019), HXB2/IpcvMcwi (2019), HXB31/IpcvMcwi (2019), HXB4/IpcvMcwi (2020), LEW/Crl (2019), LEXF11/Stm (2020), LEXF1A/Stm (2019), LEXF1C/Stm (2019), LEXF2B/Stm (2019), LEXF3/Stm (2020), LEXF4/Stm (2020), LE/Stm (2019), LH/MavRrrcAek (2020), LL/MavRrrcAek (2020), LN/MavRrrcAek (2020), LEXF10A/StmMcwi (2020), M520/NRrrcMcwi (2019), M520/N (2020), MWF/Hsd (2019), PVG/Seac (2019), SHRSP/A3NCrl (2019), SHR/OlalpcvMcwi (2019), SR/JrHsd (2020), SS/JrHsdMcwi (2019), WKY/NCrl (2019), WKY/N (2020), WN/N (2020)


Assembly: Rnor_5.0

Chromosome Start Pos End Pos Reference Nucleotide Variant Nucleotide Variant Type Strain
14 28357585 28357586 G A snv ACI/EurMcwi (MCW), ZFDM (KyushuU), GH/OmrMcwi (MCW), SBH/Ygl (MCW), SR/JrHsd (MCW), SS/JrHsdMcwi (MCW), WN/N (KNAW), LH/MavRrrc (KNAW), LL/MavRrrc (KNAW), LN/MavRrrc (KNAW), MHS/Gib (KNAW), MR/N (KNAW), SR/JrHsd (KNAW), SS/Jr (KNAW), SS/JrHsdMcwi (KNAW), ACI/N (KNAW), ACI/EurMcwi (KNAW), BBDP/WorN (KNAW), BUF/N (KNAW), DA/BklArbNsi (KNAW), F344/NRrrc (SOLiD) (KNAW), F344/NCrl (KNAW), F344/NHsd (KNAW), GK/Ox (KNAW), LE/Stm (Illumina) (KNAW), LE/Stm (SOLiD) (KNAW), LEW/Crl (KNAW), LEW/NCrl (KNAW), M520/N (KNAW), SBH/Ygl (KNAW), SHR/NCrlPrin (KNAW), SHR/NHsd (KNAW), SHR/OlaIpcv (KNAW), SHR/OlaIpcvPrin (KNAW), SHRSP/Gcrc (KNAW), F344/NRrrc (Illumina) (KNAW), WKY/Gcrc (KNAW), WKY/N (KNAW), WKY/NCrl (KNAW), WKY/NHsd (KNAW), SDLEF7/Barth (UDEL), LE/OrlBarth (UDEL), Crl:SD (UDEL), BUF/MNa (KyushuU), NIG-III/Hok (KyushuU), F344/DuCrlCrlj (KyushuU), LE/Stm (KyushuU), HTX/Kyo (KyushuU), F344/NSlc (KyushuU), RCS/Kyo (KyushuU), F344/Stm (KyushuU), HWY/Slc (KyushuU), F344/Jcl (KyushuU), KFRS3B/Kyo (KyushuU), ZF (KyushuU), COP/CrCrl (MCW & UW)


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620836 AgrOrtholog
BioCyc Gene G2FUF-16030 BioCyc
Ensembl Genes ENSRNOG00000030149 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000039467 ENTREZGENE
  ENSRNOP00000039467.6 UniProtKB/TrEMBL
  ENSRNOP00000045365 ENTREZGENE
  ENSRNOP00000045365.6 UniProtKB/TrEMBL
  ENSRNOP00000056687 ENTREZGENE
  ENSRNOP00000056687.5 UniProtKB/TrEMBL
  ENSRNOP00000076473 ENTREZGENE
  ENSRNOP00000076473.1 UniProtKB/TrEMBL
  ENSRNOP00000079850.1 UniProtKB/TrEMBL
  ENSRNOP00000083229 ENTREZGENE
  ENSRNOP00000083229.1 UniProtKB/TrEMBL
  ENSRNOP00000084026 ENTREZGENE
  ENSRNOP00000084026.1 UniProtKB/TrEMBL
  ENSRNOP00000092249 ENTREZGENE
  ENSRNOP00000092249.1 UniProtKB/TrEMBL
  ENSRNOP00000096360 ENTREZGENE
  ENSRNOP00000096360.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044659 ENTREZGENE
  ENSRNOT00000044659.6 UniProtKB/TrEMBL
  ENSRNOT00000048175 ENTREZGENE
  ENSRNOT00000048175.7 UniProtKB/TrEMBL
  ENSRNOT00000059942 ENTREZGENE
  ENSRNOT00000059942.6 UniProtKB/TrEMBL
  ENSRNOT00000100277 ENTREZGENE
  ENSRNOT00000100277.1 UniProtKB/TrEMBL
  ENSRNOT00000103416 ENTREZGENE
  ENSRNOT00000103416.1 UniProtKB/TrEMBL
  ENSRNOT00000106702 ENTREZGENE
  ENSRNOT00000106702.1 UniProtKB/TrEMBL
  ENSRNOT00000112088 ENTREZGENE
  ENSRNOT00000112088.1 UniProtKB/TrEMBL
  ENSRNOT00000112583 ENTREZGENE
  ENSRNOT00000112583.1 UniProtKB/TrEMBL
  ENSRNOT00000112920.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.740 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.220.50 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  4.10.1240.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GAIN_dom_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAIN_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracell_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_extracellular_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_latrophilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_latrophilin_rcpt_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPCR_2_secretin-like_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Latrophilin-3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lectin_gal-bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Lectin_gal-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Olfac-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:170641 UniProtKB/Swiss-Prot
NCBI Gene 170641 ENTREZGENE
PANTHER PTHR12011:SF60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam 7tm_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GAIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Gal_Lectin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HRM UniProtKB/TrEMBL
  Latrophilin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Adgrl3 PhenoGen
PRINTS GPCRSECRETIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  LATROPHILIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE G_PROTEIN_RECEP_F2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  G_PROTEIN_RECEP_F2_4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUEL_LECTIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART GPS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HormR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  OLF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5XV01_RAT UniProtKB/TrEMBL
  A0A8I5ZNG3_RAT UniProtKB/TrEMBL
  A0A8I5ZV15_RAT UniProtKB/TrEMBL
  A0A8I5ZWD6_RAT UniProtKB/TrEMBL
  A0A8I6AHH3_RAT UniProtKB/TrEMBL
  A0A8I6GLK1_RAT UniProtKB/TrEMBL
  AGRL3_RAT UniProtKB/Swiss-Prot
  D3ZH59_RAT UniProtKB/TrEMBL
  D4AAL4_RAT UniProtKB/TrEMBL
  F1LRG7_RAT UniProtKB/TrEMBL
  Q9Z173 ENTREZGENE
UniProt Secondary O88924 UniProtKB/Swiss-Prot
  O88925 UniProtKB/Swiss-Prot
  O88926 UniProtKB/Swiss-Prot
  O88927 UniProtKB/Swiss-Prot
  O88928 UniProtKB/Swiss-Prot
  O88929 UniProtKB/Swiss-Prot
  Q4LDM4 UniProtKB/Swiss-Prot
  Q4LDM5 UniProtKB/Swiss-Prot
  Q4LDM6 UniProtKB/Swiss-Prot
  Q4LDM7 UniProtKB/Swiss-Prot
  Q4LDM8 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-03-30 Lphn3  latrophilin 3    calcium-independent alpha-latrotoxin receptor homolog 3  Name updated 1299863 APPROVED
2004-09-10 Lphn3  calcium-independent alpha-latrotoxin receptor homolog 3  Cirl3    Symbol and Name updated 1299863 APPROVED
2002-08-07 Cirl3  calcium-independent alpha-latrotoxin receptor homolog 3      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression predominantly expressed in brain 632388