Slc30a9 (solute carrier family 30 member 9)

Advanced Search (OLGA)

Gene: Slc30a9 (solute carrier family 30 member 9) Rattus norvegicus

Analyze

Symbol:

Slc30a9

Name:

solute carrier family 30 member 9

RGD ID:

1593180

Description:

Predicted to enable several functions, including nuclear receptor binding activity; nuclear receptor coactivator activity; and zinc ion transmembrane transporter activity. Predicted to be involved in intracellular zinc ion homeostasis; regulation of mitochondrion organization; and zinc ion transport. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in several cellular components, including cytoplasmic vesicle; cytoskeleton; and mitochondrial membrane. Predicted to be active in endoplasmic reticulum. Orthologous to human SLC30A9 (solute carrier family 30 member 9); INTERACTS WITH bisphenol A; fenvalerate; flutamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC498358; proton-coupled zinc antiporter SLC30A9, mitochondrial; similar to solute carrier family 30 (zinc transporter), member 9; solute carrier family 30 (zinc transporter), member 9; zinc transporter 9

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SLC30A9 (solute carrier family 30 member 9)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Slc30a9 (solute carrier family 30 (zinc transporter), member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Slc30a9 (solute carrier family 30 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SLC30A9 (solute carrier family 30 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SLC30A9 (solute carrier family 30 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Slc30a9 (solute carrier family 30 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SLC30A9 (solute carrier family 30 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SLC30A9 (solute carrier family 30 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Slc30a9 (solute carrier family 30 member 9)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	B3GALT2 (beta-1,3-galactosyltransferase 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	SLC30A9 (solute carrier family 30 member 9)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Slc30a9 (solute carrier family 30 (zinc transporter), member 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	slc30a9 (solute carrier family 30 member 9)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	Y71H2AM.9	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	ZnT49B	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	slc30a9	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	41,170,164 - 41,224,861 (-)	NCBI		GRCr8
mRatBN7.2	14	40,816,284 - 40,870,992 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	40,816,290 - 40,870,929 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	41,163,614 - 41,217,044 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	42,463,696 - 42,517,124 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	40,944,484 - 40,997,919 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	42,464,814 - 42,519,760 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	42,465,807 - 42,520,020 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	42,260,670 - 42,315,608 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	43,423,677 - 43,477,106 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	39,971,799 - 40,024,874 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Birk-Landau-Perez Syndrome (ISO)

genetic disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

17beta-hydroxy-17-methylestra-4,9,11-trien-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3,4-methylenedioxymethamphetamine (ISO)

4,4'-sulfonyldiphenol (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

bisphenol A (EXP,ISO)

chlorpyrifos (ISO)

choline (ISO)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dicrotophos (ISO)

disodium selenite (ISO)

fenvalerate (EXP)

flutamide (EXP)

folic acid (ISO)

fulvestrant (ISO)

gentamycin (EXP)

L-methionine (ISO)

methapyrilene (EXP)

methidathion (ISO)

methylmercury chloride (ISO)

methylparaben (ISO)

oxaliplatin (EXP)

perfluorohexanesulfonic acid (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

thiram (ISO)

titanium dioxide (ISO)

topotecan (EXP)

tributylstannane (EXP)

triphenyl phosphate (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

zidovudine (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular zinc ion homeostasis (IBA,ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of mitochondrion organization (ISO)

zinc ion transmembrane transport (IEA)

zinc ion transport (IBA,ISO)

Cellular Component

cytoplasmic vesicle (ISO)

cytoskeleton (ISO)

endoplasmic reticulum (IBA,ISO)

mitochondrial membrane (ISO)

mitochondrion (ISO)

nucleus (ISO)

Molecular Function

antiporter activity (IEA)

chromatin binding (ISO)

nuclear receptor binding (ISO)

nuclear receptor coactivator activity (ISO)

zinc ion transmembrane transporter activity (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10409434	PMID:15988012	PMID:28334855	PMID:34800366	PMID:36889209

Genomics

Comparative Map Data

Slc30a9
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	41,170,164 - 41,224,861 (-)	NCBI		GRCr8
mRatBN7.2	14	40,816,284 - 40,870,992 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	40,816,290 - 40,870,929 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	41,163,614 - 41,217,044 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	42,463,696 - 42,517,124 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	40,944,484 - 40,997,919 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	42,464,814 - 42,519,760 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	42,465,807 - 42,520,020 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	42,260,670 - 42,315,608 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	43,423,677 - 43,477,106 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	39,971,799 - 40,024,874 (-)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

SLC30A9
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	41,990,530 - 42,090,461 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	41,990,502 - 42,090,461 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	41,992,547 - 42,092,478 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	41,687,280 - 41,784,308 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	4	41,833,450 - 41,930,478	NCBI
Celera	4	42,436,367 - 42,535,251 (+)	NCBI		Celera
Cytogenetic Map	4	p13	NCBI
HuRef	4	41,314,384 - 41,411,336 (+)	NCBI		HuRef
CHM1_1	4	41,992,998 - 42,089,827 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	41,964,357 - 42,064,385 (+)	NCBI		T2T-CHM13v2.0

Slc30a9
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	67,464,298 - 67,513,485 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	67,464,298 - 67,515,786 (+)	Ensembl		GRCm39 Ensembl
GRCm38	5	67,306,955 - 67,356,142 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	67,306,955 - 67,358,443 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	67,698,196 - 67,747,384 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	67,586,092 - 67,635,277 (+)	NCBI		MGSCv36	mm8
Celera	5	64,609,485 - 64,658,412 (+)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	36.02	NCBI

Slc30a9
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	5,642,828 - 5,716,071 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	5,641,372 - 5,716,188 (-)	NCBI	ChiLan1.0	ChiLan1.0

SLC30A9
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	42,172,118 - 42,271,944 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	42,365,508 - 42,465,365 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	36,315,959 - 36,412,653 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	42,163,547 - 42,260,175 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	42,163,724 - 42,255,318 (+)	Ensembl	panpan1.1		panPan2

SLC30A9
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	13	39,053,613 - 39,138,117 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	13	39,055,252 - 39,134,956 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	13	39,034,325 - 39,113,858 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	13	39,548,803 - 39,628,746 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	13	39,545,614 - 39,617,572 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	13	39,238,687 - 39,317,575 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	13	39,349,922 - 39,429,370 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	13	39,815,084 - 39,894,643 (+)	NCBI		UU_Cfam_GSD_1.0

Slc30a9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	37,015,591 - 37,112,184 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	9,186,198 - 9,281,242 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	9,186,044 - 9,282,646 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SLC30A9
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	33,058,618 - 33,113,283 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	33,058,666 - 33,111,775 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	34,713,130 - 34,766,670 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SLC30A9
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	8,263,287 - 8,367,549 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	8,260,355 - 8,367,395 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	54,568,926 - 54,678,061 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Slc30a9
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624761	24,869,491 - 24,944,258 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624761	24,869,370 - 24,944,410 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Slc30a9
193 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	712
Count of miRNA genes:	301
Interacting mature miRNAs:	399
Transcripts:	ENSRNOT00000065550
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
10755459	Coatc15	Coat color QTL 15		0.01681	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	14	19836944	64836944	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39998251	75582726	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
71117	Niddm17	Non-insulin dependent diabetes mellitus QTL 17	2.35		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	14	17593761	42336881	Rat
61420	Pia6	Pristane induced arthritis QTL 6	4.9		joint integrity trait (VT:0010548)	arthritic paw count (CMO:0001460)	14	18631345	42337007	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
7387267	Uae42	Urinary albumin excretion QTL 42		0.61	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	14	22167967	67167967	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18541332	63541332	Rat
631262	Tcas4	Tongue tumor susceptibility QTL 4	7.29		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	14	17622561	42337007	Rat
634352	Apr6	Acute phase response QTL 6	3.7		blood interleukin-6 amount (VT:0008595)	plasma interleukin-6 level (CMO:0001927)	14	1	41131407	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat

Markers in Region

BF386044

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	40,870,537 - 40,870,690 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	42,519,304 - 42,519,456	NCBI	Rnor6.0
Rnor_5.0	14	42,315,160 - 42,315,312	UniSTS	Rnor5.0
RGSC_v3.4	14	43,476,731 - 43,476,883	UniSTS	RGSC3.4
Celera	14	40,024,499 - 40,024,651	UniSTS
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ222791	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065550 ⟹ ENSRNOP00000059961

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	40,819,524 - 40,870,929 (-)	Ensembl
Rnor_6.0 Ensembl	14	42,465,807 - 42,520,020 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097270 ⟹ ENSRNOP00000093811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	40,816,290 - 40,870,929 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100697 ⟹ ENSRNOP00000082378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	40,816,290 - 40,870,929 (-)	Ensembl

RefSeq Acc Id:

NM_001109088 ⟹ NP_001102558

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,171,356 - 41,224,788 (-)	NCBI
mRatBN7.2	14	40,817,476 - 40,870,913 (-)	NCBI
Rnor_6.0	14	42,466,006 - 42,519,679 (-)	NCBI
Rnor_5.0	14	42,260,670 - 42,315,608 (-)	NCBI
RGSC_v3.4	14	43,423,677 - 43,477,106 (-)	RGD
Celera	14	39,971,799 - 40,024,874 (-)	RGD

Sequence:

show sequence

ATGGAGTCAGTTGGCACGGCAGGTAGCTCGGAGGCAGGAGGCGGTGACCGAGTTGGGGCCTCTG
CCCCGCCAGGATGTTTCCGGGCTTGGCCGCCGCCGCTGCGGCGCACAGGTGCAGCTGGGCGGCG
CTGTGCAGGCTCGGTGGCGGCCCGGCAGTAGCCCGCGGCCGCAGCCAGGGATGGAAGAATTTAA
TGACATTTGAAAGCTTTACGTCCATGATTCCCAGCATTCACCCGCAAATATCTGTTCTAAATCA
AGTCAAGTTGTACTCTACAAATGTCCAGAAAGGAGGGCAGGGCTCACAAACTCCGAGAACTGAC
AAAGCCCCACCGCTTACGCAAGCAGCAGAAAATATAGGTGCAGAACTCAAAGCTCCACTTAAGC
AAGATCCTCTCCAAGTCAGAGTCAAAGCAGTCCTTAAGAAAAGGGAGTATGGATCAAAATACAC
TAAGAATAATTTCATCACTGGAGTAAGAGCAATCAATGAGTTCTGCCTTAAGTCCAGTGATTTA
GAACAACTTCGAAAAATCAGGCGACGAAGTCCCCACGATGACACTGAGTCCTTTACTGTGTTCT
TGAGGTCAGATGTGGAAGCAAAAGCTCTGGAAGTTTGGGGAAGCCTTGAAGCTCTTGCCAGAGA
GAAAAAATTGCGTAAAGAAGCAGAGATAGAATACAGAGAACGGCTGTTTAGAAACCAAAGAATA
CTAAGAGAATATGGTGATTTCTTGGGAAACACAAAGCCACGCTCCAGAGCGATCTCAGTGTTCC
TTAAGGGACCAGGAAAGGTGGTGATGGTCGCTATTTGCATTAATGGCTTAAACTGCTTCTTTAA
ATTTCTTGCCTGGATTTATACGGGTTCAGCAAGTATGTTCTCAGAAGCTATACATTCATTATCT
GATACTTGTAACCAGGGTTTGCTAGCACTGGGCATCAGCAAGTCTGTTCAAACACCAGATCCTT
CTCACCCGTATGGCTTTTCAAATATGCGCTATATTTCTTCATTGATTAGTGGTGTTGGTATTTT
CATGATGGGCGCAGGACTCTCTTGGTATCATGGAATCATGGGATTGCTTCATCCTCAACCAATG
GAATCCCTTCTATGGGCATATTGTATTTTAGCAGGATCTTTGGTGTCTGAAGGAGCAACACTTC
TCGTTGCCATAAATGAACTTCGCAGGAGCGCTCAAGCGAATGGGACATCATTTTATAAGTATGT
CATGGAGAGTCGTGATCCGAGTACAAATGTTATTCTATTGGAGGACACTGCGGCTGTCCTAGGA
GTGATGATAGCAGCTACCTGCATGGGCCTTACCTCCATAACAGGCAATCCATTGTATGACAGCC
TGGGTTCCTTGGGTGTAGGCACCTTACTAGGTGTGGTCTCGGCATTCCTCATCTCTACCAACAT
AGAAGCACTCCTAGGACGATCCATCCAACCAGAGCAAGTACAGCGGCTTACCGAACTTCTGGAG
AGCGACCCATCAGTAAGGGCAATCCATGATGTCAAAGCCACAGACCTGGGATTAGGGAAAGTCA
GATTTAAGGCAGAAGTTGATTTTGATGGACGTGTTGTTACAAGATCATATTTGGAAAAGCAAGA
TTTTGACCAAATGATGCAAGAGATCGAAGAAGTGAAAACTCCTGAACAATTAGAAGCCTTTATG
CTTAAACATGGAGAAAATATTATTGATACTCTAGGAGCTGAAGTAGACAGGCTTGAGAAAGAGC
TGAAAAAACGAAACCCTGAAGTTCGGCACGTGGATCTTGAGATCTTATAG

hide sequence

RefSeq Acc Id:

XM_006250963 ⟹ XP_006251025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	41,170,164 - 41,224,861 (-)	NCBI
mRatBN7.2	14	40,816,284 - 40,870,992 (-)	NCBI
Rnor_6.0	14	42,464,814 - 42,519,760 (-)	NCBI
Rnor_5.0	14	42,260,670 - 42,315,608 (-)	NCBI

Sequence:

show sequence

TCGCGCCGCACTACCACGACTTCCGGGTCGCCGAGGCCTCCGGCCGCGGCGTACACATCCGTGT
TCGCTGGGGTCCAGTCTATGGAGTCAGTTGGCACGGCAGGTAGCTCGGAGGCAGGAGGCGGTGA
CCGAGTTGGGGCCTCTGCCCCGCCAGGATGTTTCCGGGCTTGGCCGCCGCCGCTGCGGCGCACA
GGTGCAGCTGGGCGGCGCTGTGCAGGCTCGGTGGCGGCCCGGCAGTAGCCCGCGGCCGCAGCCA
GGGATGGAAGAATTTAATGACATTTGAAAGCTTTACGTCCATGATTCCCAGCATTCACCCGCAA
ATATCTGTTCTAAATCAAGTCAAGTTGTACTCTACAAATGTCCAGAAAGGAGGGCAGGGCTCAC
AAACTCCGAGAACTGACAAAGCCCCACCGCTTACGCAAGCAGAAAATATAGGTGCAGAACTCAA
AGCTCCACTTAAGCAAGATCCTCTCCAAGTCAGAGTCAAAGCAGTCCTTAAGAAAAGGGAGTAT
GGATCAAAATACACTAAGAATAATTTCATCACTGGAGTAAGAGCAATCAATGAGTTCTGCCTTA
AGTCCAGTGATTTAGAACAACTTCGAAAAATCAGGCGACGAAGTCCCCACGATGACACTGAGTC
CTTTACTGTGTTCTTGAGGTCAGATGTGGAAGCAAAAGCTCTGGAAGTTTGGGGAAGCCTTGAA
GCTCTTGCCAGAGAGAAAAAATTGCGTAAAGAAGCAGAGATAGAATACAGAGAACGGCTGTTTA
GAAACCAAAGAATACTAAGAGAATATGGTGATTTCTTGGGAAACACAAAGCCACGCTCCAGAGC
GATCTCAGTGTTCCTTAAGGGACCAGGAAAGGTGGTGATGGTCGCTATTTGCATTAATGGCTTA
AACTGCTTCTTTAAATTTCTTGCCTGGATTTATACGGGTTCAGCAAGTATGTTCTCAGAAGCTA
TACATTCATTATCTGATACTTGTAACCAGGGTTTGCTAGCACTGGGCATCAGCAAGTCTGTTCA
AACACCAGATCCTTCTCACCCGTATGGCTTTTCAAATATGCGCTATATTTCTTCATTGATTAGT
GGTGTTGGTATTTTCATGATGGGCGCAGGACTCTCTTGGTATCATGGAATCATGGGATTGCTTC
ATCCTCAACCAATGGAATCCCTTCTATGGGCATATTGTATTTTAGCAGGATCTTTGGTGTCTGA
AGGAGCAACACTTCTCGTTGCCATAAATGAACTTCGCAGGAGCGCTCAAGCGAATGGGACATCA
TTTTATAAGTATGTCATGGAGAGTCGTGATCCGAGTACAAATGTTATTCTATTGGAGGACACTG
CGGCTGTCCTAGGAGTGATGATAGCAGCTACCTGCATGGGCCTTACCTCCATAACAGGCAATCC
ATTGTATGACAGCCTGGGTTCCTTGGGTGTAGGCACCTTACTAGGTGTGGTCTCGGCATTCCTC
ATCTCTACCAACATAGAAGCACTCCTAGGACGATCCATCCAACCAGAGCAAGTACAGCGGCTTA
CCGAACTTCTGGAGAGCGACCCATCAGTAAGGGCAATCCATGATGTCAAAGCCACAGACCTGGG
ATTAGGGAAAGTCAGATTTAAGGCAGAAGTTGATTTTGATGGACGTGTTGTTACAAGATCATAT
TTGGAAAAGCAAGATTTTGACCAAATGATGCAAGAGATCGAAGAAGTGAAAACTCCTGAACAAT
TAGAAGCCTTTATGCTTAAACATGGAGAAAATATTATTGATACTCTAGGAGCTGAAGTAGACAG
GCTTGAGAAAGAGCTGAAAAAACGAAACCCTGAAGTTCGGCACGTGGATCTTGAGATCTTATAG
ATAGGAGGAGTGAGTCACATGGGCCGTGGCGACGTCTTCCTTCCCACTGCAGGGGCCAGTGCCG
TCCAGAAGCTGAACCTTTCCAGATGGATGGGATGTCTTTCCTGTGCTGAGCAGTTGACCAGACC
ACAGAACTCAGACTCCTCTCTTCTAATCATGTCTTTGTGCTTCTGTAGGGACATTGGCTGCTTA
GGTGACCCACAGTCTCATTTTAGCCAGTCCGAGTTGAATCATGAAATCATGTTTTCTTTCTTAA
CATGGTACAACGTGTCCCTGGACTTGAAATCTAGGTTACAACTAAAAAGATTGGTCCATGCAAG
TTCTGATCTTGAGTATTCTGGCTAAACCTCACTGTGTGGATTTTAAACAGTCACTGTTTTGAAG
GCCGTCCTTCCTGCCCAGTTGGTTTTTGACCTGAACACTGAGAGGGGCACTCTCTGACTTCATT
ATCTGCGGAGGTCCATTCCAGAAGCAGCCCAGTTACTGAATGGAATGAAGACATTTCTGCATCT
TCCAGATCCTAGTAGTTGCCATTTTGTAAAATTCCTTCTCTCTCTTTTACCTTTTTCCTTATTT
GGTTTAATTTTTGTAACATTACAGACATAATCCTAAATGTCTGACTTTTTTTAAACTGGCTTCG
GTGCCATTGTGTTTATTTACTGGGAAATAATGCATTGTAAATGTTTTAACATTCTGTAAAATGG
ACTAGAAATATTTATAATTTTATAGGCAGGATAACGTTTTGTTTTTAATTTATTTAAGAGAAGG
CACTACTTGTGTAAATCTGAACTATGGGATACCTTTTGCTTTGAGAGAGCAGTAAATCGCTTAG
ACTGAAACGTGTGTAGTGGTTTTGTGTGCTCACAGAGCCAACAGTGCACCTGATGGCTTGTAGT
TCAAGTGGGCGGTTAGCATAGCATATTGGCTGTAACACGTTATAGAAGCAGATAGCTCTCTGGT
GACTGAGATGTTGAGTCTCAGTCAGTAACTAGAGACTCGGTGAAAGCTGCAGCTGTCTGCCCAG
ACAGCTCATGAGCTGTGTGGGAGTGGCAGCTGCCCTGTTGGGGAGAGTAGTGGACGAACAGCCC
TCGCACCCCTGTGAGCTCAGGGGCTCCAGACTTTCTGAGATGGAAGTTTGTGTACTATAGAAAA
CTGTAATGTGGAAACAAAAAATAAATCTCTGATTAAAGGA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001102558	(Get FASTA)	NCBI Sequence Viewer
	XP_006251025	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90027	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000059961.2
	ENSRNOP00000082378.1
	ENSRNOP00000093811.1

RefSeq Acc Id:

NP_001102558 ⟸ NM_001109088

- UniProtKB:

A0A8I5ZUD8 (UniProtKB/TrEMBL), A6JDA5 (UniProtKB/TrEMBL), A0A8I6AXK2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MFPGLAAAAAAHRCSWAALCRLGGGPAVARGRSQGWKNLMTFESFTSMIPSIHPQISVLNQVKL
YSTNVQKGGQGSQTPRTDKAPPLTQAAENIGAELKAPLKQDPLQVRVKAVLKKREYGSKYTKNN
FITGVRAINEFCLKSSDLEQLRKIRRRSPHDDTESFTVFLRSDVEAKALEVWGSLEALAREKKL
RKEAEIEYRERLFRNQRILREYGDFLGNTKPRSRAISVFLKGPGKVVMVAICINGLNCFFKFLA
WIYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMG
AGLSWYHGIMGLLHPQPMESLLWAYCILAGSLVSEGATLLVAINELRRSAQANGTSFYKYVMES
RDPSTNVILLEDTAAVLGVMIAATCMGLTSITGNPLYDSLGSLGVGTLLGVVSAFLISTNIEAL
LGRSIQPEQVQRLTELLESDPSVRAIHDVKATDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQ
MMQEIEEVKTPEQLEAFMLKHGENIIDTLGAEVDRLEKELKKRNPEVRHVDLEIL

hide sequence

RefSeq Acc Id:	XP_006251025 ⟸ XM_006250963
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6AXK2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MFPGLAAAAAAHRCSWAALCRLGGGPAVARGRSQGWKNLMTFESFTSMIPSIHPQISVLNQVKL YSTNVQKGGQGSQTPRTDKAPPLTQAENIGAELKAPLKQDPLQVRVKAVLKKREYGSKYTKNNF ITGVRAINEFCLKSSDLEQLRKIRRRSPHDDTESFTVFLRSDVEAKALEVWGSLEALAREKKLR KEAEIEYRERLFRNQRILREYGDFLGNTKPRSRAISVFLKGPGKVVMVAICINGLNCFFKFLAW IYTGSASMFSEAIHSLSDTCNQGLLALGISKSVQTPDPSHPYGFSNMRYISSLISGVGIFMMGA GLSWYHGIMGLLHPQPMESLLWAYCILAGSLVSEGATLLVAINELRRSAQANGTSFYKYVMESR DPSTNVILLEDTAAVLGVMIAATCMGLTSITGNPLYDSLGSLGVGTLLGVVSAFLISTNIEALL GRSIQPEQVQRLTELLESDPSVRAIHDVKATDLGLGKVRFKAEVDFDGRVVTRSYLEKQDFDQM MQEIEEVKTPEQLEAFMLKHGENIIDTLGAEVDRLEKELKKRNPEVRHVDLEIL hide sequence

Ensembl Acc Id:

ENSRNOP00000059961 ⟸ ENSRNOT00000065550

Ensembl Acc Id:

ENSRNOP00000093811 ⟸ ENSRNOT00000097270

Ensembl Acc Id:

ENSRNOP00000082378 ⟸ ENSRNOT00000100697

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZWW5-F1-model_v2	AlphaFold	D3ZWW5	1-567	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699304

Promoter ID:

EPDNEW_R9829

Type:

initiation region

Name:

Slc30a9_1

Description:

solute carrier family 30 member 9

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	42,519,715 - 42,519,775	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1593180	AgrOrtholog
BioCyc Gene	G2FUF-15775	BioCyc
Ensembl Genes	ENSRNOG00000002246	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000065550.4	UniProtKB/TrEMBL
	ENSRNOT00000097270.1	UniProtKB/TrEMBL
	ENSRNOT00000100697.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.1510.10	UniProtKB/TrEMBL
	3.90.530.10	UniProtKB/TrEMBL
InterPro	Cation_efflux	UniProtKB/TrEMBL
	Cation_efflux_TMD	UniProtKB/TrEMBL
	DNA-bd_dom_put	UniProtKB/TrEMBL
	SLC30A9	UniProtKB/TrEMBL
	XPA_C_sf	UniProtKB/TrEMBL
KEGG Report	rno:498358	UniProtKB/TrEMBL
NCBI Gene	498358	ENTREZGENE
PANTHER	PTHR13414	UniProtKB/TrEMBL
	ZINC TRANSPORTER 9	UniProtKB/TrEMBL
Pfam	Cation_efflux	UniProtKB/TrEMBL
PhenoGen	Slc30a9	PhenoGen
RatGTEx	ENSRNOG00000002246	RatGTEx
Superfamily-SCOP	Putativ_DNA_bind	UniProtKB/TrEMBL
	SSF161111	UniProtKB/TrEMBL
UniProt	A0A8I5ZUD8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AXK2	ENTREZGENE, UniProtKB/TrEMBL
	A6JDA5	ENTREZGENE, UniProtKB/TrEMBL
	D3ZWW5_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-02-24	Slc30a9	solute carrier family 30 member 9	Slc30a9	solute carrier family 30 (zinc transporter), member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-05	Slc30a9	solute carrier family 30 (zinc transporter), member 9	LOC498358	similar to solute carrier family 30 (zinc transporter), member 9	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC498358	similar to solute carrier family 30 (zinc transporter), member 9			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - OMIM