Srn3 QTL Report (Rattus norvegicus) - Rat Genome Database
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QTL: Srn3 (Serum renin concentration QTL 3) Rattus norvegicus

Symbol: Srn3
Name: Serum renin concentration QTL 3
RGD ID: 1300140
Also known as: Specialized Center of Research QTL 112; SCOR112
Trait: blood renin amount   (VT:0003349)    
Measurement Type: plasma renin activity level   (CMO:0000116)    
LOD Score: 3.19
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01416,336,988 - 33,163,485RGD_MAPPER_PIPELINERnor6.0
Rnor_5.01416,262,980 - 32,957,654RGDRnor5.0
RGSC_v3.41416,432,517 - 33,157,602RGDRGSC3.4
RGSC_v3.11416,432,792 - 33,157,602RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
kidney disease  (IAGP)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/SsNHsd  (IEA)
SS/JrHsdMcwi  (IEA)

References

References - curated
1. Moreno C, etal., Physiol Genomics 2003 Nov 11;15(3):243-57. Epub 2003 Oct 07.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
69432Ugt2a1UDP glucuronosyltransferase family 2 member A1142219297022217094Rat
70069Cxcl2C-X-C motif chemokine ligand 2141873134618733391Rat
2065Afpalpha-fetoprotein141914175519159919Rat
70548Ppbppro-platelet basic protein141885243318853237Rat
3305Pf4platelet factor 4141884854918849258Rat
2085Albalbumin141917627519191793Rat
2149Aregamphiregulin141852192118531179Rat
61981Csn2casein beta142197227421979511Rat
2101Ambnameloblastin142123988721252534Rat
3937Ugt2b37UDP-glucuronosyltransferase 2 family, member 37142249508422534865Rat
70513Gnrhrgonadotropin releasing hormone receptor142348046223498450Rat
619926Nup54nucleoporin 54141712343417141832Rat
3953Smr3bsubmaxillary gland androgen regulated protein 3B142149021621709077Rat
61990Csn3casein kappa142180373821810291Rat
628798Cxcl9C-X-C motif chemokine ligand 9141722883217233743Rat
628614Afmafamin141907867819132212Rat
620667Dckdeoxycytidine kinase142093544220952939Rat
619869Cxcl1C-X-C motif chemokine ligand 1141874367818745457Rat
628833Art3ADP-ribosyltransferase 3141714303717225389Rat
620831Epha5EPH receptor A5142558931225958258Rat
620209Cxcl10C-X-C motif chemokine ligand 10141721073317212930Rat
620299Eregepiregulin141857762018591395Rat
2667GcGC, vitamin D binding protein142026702320302577Rat
708342Parm1prostate androgen-regulated mucin-like protein 1141797291418076870Rat
708417Ugt2b7UDP glucuronosyltransferase family 2 member B7142259710322619968Rat
620168Npffr2neuropeptide FF receptor 2142014848520193577Rat
621604Uso1USO1 vesicle transport factor141737145117436948Rat
621706Ythdc1YTH domain containing 1142297183423002326Rat
708534Sult1b1sulfotransferase family 1B member 1142214241222155246Rat
620983Oprpnopiorphin prepropeptide142133846421353533Rat
621152Csn1s2acasein alpha s2-like A142193085821944921Rat
620491Sult1d1sulfotransferase family 1D, member 1142210741822126011Rat
621069RestRE1-silencing transcription factor143313198533152019Rat
620275Btcbetacellulin141823185418270621Rat
68936Slc4a4solute carrier family 4 member 4142047625820817042Rat
621812Cxcl3C-X-C motif chemokine ligand 3141882016818839659Rat
3954Vcsa2variable coding sequence A2142155848921564115Rat
1302967Tmprss11ctransmembrane protease, serine 11C142340571723461384Rat
1304608Tecrltrans-2,3-enoyl-CoA reductase-like142666285126735878Rat
727827Cxcl11C-X-C motif chemokine ligand 11141719539517198170Rat
628623Ugt2b15UDP glucuronosyltransferase family 2 member B15142237542822486291Rat
708540Cxcl6C-X-C motif chemokine ligand 6141886020118920839Rat
1303278Tmprss11btransmembrane serine protease 11B142410376824125260Rat
620895Ugt2b35UDP glucuronosyltransferase 2 family, polypeptide B35142255363322591461Rat
620836Adgrl3adhesion G protein-coupled receptor L3142836217629226085Rat
621882Scarb2scavenger receptor class B, member 2141706417317115620Rat
620592Cabs1calcium binding protein, spermatid associated 1142174629421748356Rat
708541Ugt2b17UDP glucuronosyltransferase family 2 member B17142272439922736148Rat
1305114Mob1bMOB kinase activator 1B142096005220992753Rat
2430Csn1s1casein alpha s1142199345022009308Rat
1308540Utp3UTP3, small subunit processome component142115399821155652Rat
1306446Tmprss11gtransmembrane protease, serine 11G142316663323207327Rat
1308523Ccdc158coiled-coil domain containing 158141691713816976240Rat
1307405Septin11septin 11141636954416405645Rat
3776Sult1e1sulfotransferase family 1E member 1142207086122089264Rat
1308324Uba6ubiquitin-like modifier activating enzyme 6142350762823571446Rat
1310879Mthfd2lmethylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like141864027418721298Rat
1311994Sowahbsosondowah ankyrin repeat domain family member B141649102316495764Rat
1308444Ugt2a3UDP glucuronosyltransferase family 2 member A3142225150722267899Rat
1310750Adamts3ADAM metallopeptidase with thrombospondin type 1, motif 3141986627820072896Rat
1310858Grsf1G-rich RNA sequence binding factor 1142103999021056413Rat
1311584Stap1signal transducing adaptor family member 1142357540023604984Rat
1310470Shroom3shroom family member 3141662276716903265Rat
1307267NaaaN-acylethanolamine acid amidase141728326217302364Rat
1306201Igfbp7insulin-like growth factor binding protein 7143301030033070193Rat
1309477Polr2bRNA polymerase II subunit B143307010433107792Rat
1310094Thap6THAP domain containing 6141759586517616192Rat
1309209Ccnicyclin I141634151016364326Rat
1309571G3bp2G3BP stress granule assembly factor 2141743714517523254Rat
1310155Jchainjoining chain of multimeric IgA and IgM142117684121183731Rat
1309625Cdkl2cyclin dependent kinase like 2141753017017565950Rat
1306796Enamenamelin142119463521219529Rat
1307093Ppef2protein phosphatase with EF-hand domain 2141730682517333588Rat
1309989Ugt2b10UDP glucuronosyltransferase 2 family, polypeptide B10142280613222826890Rat
1310384Prr27proline rich 27142188245421898651Rat
620654Tmprss11dtransmembrane serine protease 11D142333093323392993Rat
1561381RGD1561381similar to microsomal glutathione S-transferase 3142116379121164435Rat
1561929LOC360919similar to alpha-fetoprotein141902881019072734Rat
1561698Tmprss11etransmembrane serine protease 11E142306100523114471Rat
1563299Smr3asubmaxillary gland androgen regulated protein 3A142170333621709074Rat
1560084Epgnepithelial mitogen141862710318635135Rat
1561589RGD1561589similar to RIKEN cDNA 5730434I03 gene143225776832258666Rat
1565664RGD1565664similar to UDP-glucuronosyltransferase 2B1 precursor, microsomal (UDPGTR-2)142276811822777917Rat
1565048RGD1565048similar to 60S ribosomal protein L9142558461125585237Rat
1561883Odamodontogenic, ameloblast associated142184299021852216Rat
1559459RGD1559459similar to Expressed sequence AI788959142293245422955663Rat
1303061Cenpccentromere protein C142361190923670314Rat
1359468Fdcspfollicular dendritic cell secreted protein142181899921823687Rat
1562348Ankrd17ankyrin repeat domain 17141929102519431521Rat
628794Csn1s2bcasein alpha s2-like B142189995421916068Rat
1309071Dzip1-ps1DAZ interacting protein 1, pseudogene 1142187693121878989Rat
1562394RGD1562394similar to ribosomal protein L30142203157622031980Rat
1311800Stbd1starch binding domain 1141697635516979760Rat
1566082Rassf6Ras association domain family member 6141898385219023921Rat
1560675Tmprss11ftransmembrane serine protease 11F142398241524080477Rat
1359112Sdad1SDA1 domain containing 1141724738117274228Rat
1559547Cox18cytochrome c oxidase assembly factor COX18141943472819446379Rat
1565242Rufy3RUN and FYVE domain containing 3142105857521144775Rat
1565243LOC498339LRRGT00190142045609920474728Rat
1359460Noa1nitric oxide associated 1143310786833124172Rat
1589974Stathstatherin142195701321960871Rat
1587531LOC689849similar to heat shock protein 1, alpha142280207922804253Rat
1585182LOC690029similar to Phosphoglycerate kinase 1142506706725068269Rat
1359180Rchy1ring finger and CHY zinc finger domain containing 1141761596817631715Rat
1585459Fam47efamily with sequence similarity 47, member E141699149617027563Rat
1587539LOC689841similar to Rho GTPase activating protein 11A142278632922795349Rat
1584043LOC690125similar to Ferritin light chain 1 (Ferritin L subunit 1)142806988028075658Rat
1587481LOC689899similar to 60S ribosomal protein L23a142412959824130134Rat
1587388LOC289517similar to Alpha-enolase (2-phospho-D-glycerate hydro-lyase) (Non-neural enolase) (NNE) (Enolase 1)141878327318788167Rat
1595834LOC364228similar to T-cell activation kelch repeat protein142229380122303486Rat
1592356Amtnamelotin142128248821301966Rat
1588690LOC689798similar to UDP-glucuronosyltransferase142264749822654974Rat
1597019LOC501910similar to Importin-7 (Imp7) (Ran-binding protein 7) (RanBP7)143170458131708019Rat
1597129LOC364127similar to peptidylprolyl isomerase D142174026621741405Rat
1597130LOC364125similar to 60S ribosomal protein L8141926250219263247Rat
1596322Tmprss11atransmembrane serine protease 11A142322673523284515Rat
2318302LOC100362385sperm motility kinase-like142433431624518000Rat
2321603LOC100364155hypothetical LOC100364155142232599922346301Rat
2321083Ppial4dpeptidylprolyl isomerase A (cyclophilin A)-like 4D142270690622707648Rat
2321178LOC100364381hypothetical LOC100364381142404760524048475Rat
2324284LOC100362674phytoceramidase, alkaline-like142775903827767250Rat
2324321LOC100362637myelin-associated oligodendrocytic basic protein-like142544543625445909Rat
2324510LOC100362544dihydrouridine synthase 4-like142513587725136638Rat
6487121LOC100912459MKL/myocardin-like protein 2-like143037363230385366Rat
6489816Odaphodontogenesis associated phosphoprotein141757529517583214Rat
6495044LOC100911104lymphocyte antigen 6B-like142286851822872403Rat
6486918LOC100912428uncharacterized LOC100912428143036893230374219Rat
6496885LOC100910703heterogeneous nuclear ribonucleoprotein A3-like142266279722665103Rat
7489037Mir6321microRNA 6321142109733821097478Rat
7526663LOC102554948uncharacterized LOC102554948142118794721275520Rat
7496786LOC102546535uncharacterized LOC102546535141763958317657381Rat
7513863LOC102546751uncharacterized LOC102546751142804557328046534Rat
7646389LOC102548839uncharacterized LOC102548839141875277918783025Rat
7666596LOC10255137660S ribosomal protein L19-like142285407622854782Rat
7635956LOC102550139CWF19-like protein 1-like141719210417194684Rat
7623930LOC102549397zinc finger protein 120-like142772760127731053Rat
7624541LOC102554132uncharacterized LOC102554132141919927019211671Rat
7618949LOC102549742uncharacterized LOC102549742141884487218845853Rat
7574419LOC102547286uncharacterized LOC102547286143032334030332728Rat
7553273LOC102549966kelch repeat and BTB domain-containing protein 8-like142239726422399534Rat
7693237LOC102551561lymphocyte antigen 6B-like142288739122888008Rat
7690127LOC102551339uncharacterized LOC102551339143285545832897232Rat
9088827LOC103693736uncharacterized LOC103693736142377144823777451Rat
9104949LOC103692659signal recognition particle 19 kDa protein pseudogene142039969620403283Rat
9193396LOC103692662uncharacterized LOC103692662142055432020559618Rat
9195730LOC103690383UDP-glucuronosyltransferase 2B4-like142273863022743161Rat
9201561LOC10369278560S ribosomal protein L39143303095033031322Rat
9203318LOC103692772UDP-glucuronosyltransferase 2B7 pseudogene142264350822646316Rat
9220563LOC103692786ran guanine nucleotide release factor pseudogene143301354833029379Rat
9266848LOC103692657uncharacterized LOC103692657141773899217743735Rat
9388429LOC103692658uncharacterized LOC103692658141886224018864474Rat
9333881LOC103692775uncharacterized LOC103692775142337864323404386Rat
9371121LOC103692672nuclease-sensitive element-binding protein 1 pseudogene141701061317014156Rat
9364872LOC103693733uncharacterized LOC103693733142151515621534241Rat
9465688LOC103692656uncharacterized LOC103692656141648853716491014Rat
9329768LOC103693735uncharacterized LOC103693735142272026322738093Rat
9434891LOC103693732uncharacterized LOC103693732141918907019189886Rat
9473682LOC103693731uncharacterized LOC103693731141663967316640359Rat
9399075LOC103692776uncharacterized LOC103692776142343353423480728Rat
9399890LOC103693734uncharacterized LOC103693734142234644422365795Rat
9437172LOC103693738uncharacterized LOC103693738142676938926776335Rat
9444074LOC103692660gem-associated protein 8 pseudogene142058734220591163Rat
9685090Mir193bmicroRNA 193b143033104930331131Rat
11368666LOC108352725uncharacterized LOC108352725142089278120899767Rat
11434380LOC108352824SMR1 protein-like142160791921612401Rat
11469569LOC108352724uncharacterized LOC108352724142088967120921710Rat
11357190LOC108352731uncharacterized LOC108352731142553317425552366Rat
11358099LOC108352733uncharacterized LOC108352733142823447328243759Rat
11456987LOC108352849small nuclear ribonucleoprotein G pseudogene142975474029755232Rat
11446409LOC108352727uncharacterized LOC108352727142184717421858737Rat
11368474LOC108352726uncharacterized LOC108352726142159232221605787Rat
11438225LOC108352732uncharacterized LOC108352732142824378828246479Rat
11438234Trnac-gca38transfer RNA cysteine (anticodon GCA) 38143303159633031667Rat
11361880LOC108352720uncharacterized LOC108352720141678018616785750Rat
11432687LOC108352729uncharacterized LOC108352729142300241523025061Rat
11405419LOC108352841uncharacterized LOC108352841142850129428514261Rat
11405651LOC108352730zinc finger protein 605-like142365594523659246Rat
11355194LOC108352847actin, alpha skeletal muscle-like142377102623771741Rat
11384332LOC108352721ragulator complex protein LAMTOR2 pseudogene141747137017473244Rat
11385906LOC108352722protein transport protein Sec61 subunit gamma-like141754281617543352Rat
11375289LOC108352723uncharacterized LOC108352723141885481618856469Rat
11375302LOC108352734uncharacterized LOC108352734143266382332675292Rat
11377841LOC10835271960S ribosomal protein L12 pseudogene141673972016740432Rat
11401058LOC108352850uncharacterized LOC108352850143258575732595630Rat
11380862LOC108352728uncharacterized LOC108352728142204751022056580Rat
11503027LOC108352825protein transport protein Sec61 subunit gamma pseudogene142765255227685704Rat
11497443LOC108352848actin, alpha skeletal muscle-like142380475523805462Rat
11510655Trnat-cgu2transfer RNA threonine (anticodon CGU) 2143034170630341777Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10113D14Mit2194141916170519161893Ratregion
10135D14Wox11135141919154219191664Ratregion
10413D14Wox14126142200984922009966Ratregion
10622D14Mgh3120142026622320266347Ratregion
10623D14Wox12194142027892120279109Ratregion
11077D14Wox18147141885023518850381Ratregion
11078D14Mgh10235141885017918850405Ratregion
11482D14Wox13194142156522721565427Ratregion
11482D14Wox13194142155507621555306Ratregion
11483D14Wox17142156520821565418Ratregion
33551D14Mit6191141990974019909932Ratregion
35342D14Rat8132143259392632594049Ratregion
37822D14Rat33220142938484529385065Ratregion
36520D14Rat7168142466885424669027Ratregion
34890D14Rat9130143015505730155192Ratregion
34965D14Rat10176143316331633163485Ratregion
35965D14Rat6174141633698816337161Ratregion
39598D14Rat81202142298589022986118Ratregion
38486D14Rat41140142861022328610358Ratregion
40104D14Rat99237142646600226466248Ratregion
38932D14Rat36145143303991233040042Ratregion
39138D14Rat50232142742047927420736Ratregion
39174D14Rat55219142768634227686562Ratregion
39426D14Rat77240141883381818834102Ratregion
41990D14Arb16120142300390323004027Ratregion
41992D14Arb17190142027889020279110Ratregion
41996D14Arb3277141884935518849638Ratregion
41998D14Arb4246141919147619191720Ratregion
42002D14Arb6300142208891122089228Ratregion
43015D14Rat116146142978957729789723Ratregion
42390D14Rat143119141984782919847953Ratregion
40834D14Rat78104141749996917500078Ratregion
40930D14Rat82211143041230630412508Ratregion
41690D14Rat102200141980987419810068Ratregion
45155D14Got19197141705803417058230Ratregion
45156D14Got22299141693528116935579Ratregion
45158D14Got18171141706589017066060Ratregion
45159D14Got20178141709496417095141Ratregion
45160D14Wox2186141818520618185395Ratregion
45162D14Got23198141904173719041934Ratregion
45163D14Got25175141961271019612884Ratregion
45164D14Got26138141978790719788044Ratregion
45165D14Got29133142199400521994137Ratregion
45166D14Got33254142768638427686637Ratregion
45167D14Got32197142637341526373606Ratregion
45168D14Got34163142826315028263317Ratregion
45169D14Got38253142984986929850121Ratregion
45170D14Got36122143041594130416062Ratregion
45171D14Got37176143010494930105125Ratregion
45172D14Got39139143266132032661458Ratregion
45173D14Got89263143279073332790995Ratregion
45187D14Got35119142958603429586154Ratregion
60762D14Wox10100141919154119191619Ratregion
60763D14Wox3191142412944224129630Ratregion
60058D14Got24150141913362919133778Ratregion
60059D14Got2791142043610220436192Ratregion
60060D14Got28169142043606520436233Ratregion
60061D14Got30283142128688821287167Ratregion
738055D14Hmgc4247142155505621555302Ratregion
738057D14Hmgc5198142339933623399533Ratregion
738059D14Hmgc3144141930034319300486Ratregion
738061D14Hmgc6155142562224425622682Ratregion
738061D14Hmgc6155142562224425622398Ratregion
66577D14Mco8210142307263823072841Ratregion
66697D14Uia4227142434622224346448Ratregion
67231D14Arb18128142200985322009980Ratregion
1630530D14Wox31290142207130722071596Ratregion
1630716D14Got134162141895297418953130Ratregion
1627952D14Got142215141720841917208633Ratregion
1633391D14Got130171141961274919612919Ratregion
1634893D14Got129185141888007618880260Ratregion
1635397D14Wox19142208908222089226Ratregion
1637138D14Ulb1304141713483517135138Ratregion
1634245D14Got132266141667408716674352Ratregion
4145308D14Hmgc11293141743232017432613Ratregion
4145310D14Hmgc10247141738555917385806Ratregion
4145312D14Hmgc12163141744654817446711Ratregion
4145314D14Hmgc9229141738059217380821Ratregion
4145316D14Hmgc13233141749699917497232Ratregion
7205986Ppia150142270699922707148Ratregion
7193050U27267123141886122718861349Ratregion
7206728stSG6070150141730300917304096Ratregion
5035881PMC275467P5941141914414019145080Ratregion
5038634BB23255183142105628521056367Ratregion
5036007PMC84675P1646143313696733137612Ratregion
5038904RH127399220142478357824783796Ratregion
5039006RH127459183141942959219429774Ratregion
5039034RH127475150141763138517631534Ratregion
5033979RH140889183141737163817371820Ratregion
7206204Afp165141914283619144190Ratregion
5029231RH144013126141711677317116898Ratregion
5029309RH144308200141715185317152052Ratregion
5035130BE096355184142096831720968500Ratregion
5032369C87704114142115413021154243Ratregion
5027147WI-17713156142308753523087690Ratregion
5027295C80280115142105598121056095Ratregion
5027297AW557551132142115422421154355Ratregion
5032815RH135403185143306658933066773Ratregion
5032909RH136935183142357936523579547Ratregion
5025000AU022345228143312383633124063Ratregion
5025002BB446153103142356827523568377Ratregion
5030321BE105744151142212467122124821Ratregion
502794338.MMHAP88FLE5.seq158142413788724138044Ratregion
5033467RH138942129142918919029189318Ratregion
5033653RH139612191141796943317969623Ratregion
5025620RH129019188141714306417143251Ratregion
5025662RH129181191143036581430366004Ratregion
5028253D4Mit35368142609855626098623Ratregion
5030903BF399292192141636164516361836Ratregion
5028446U27267125141886080318860927Ratregion
5051392AI118071132142253418922534320Ratregion
5051395AW548875104141637118916371292Ratregion
5055895RH144064138142839882028398957Ratregion
5056659RH144506104142014123120141334Ratregion
5059482BI291183150141937582119375970Ratregion
5052446RH118291195141796428217964476Ratregion
5055291RH143716108141757455217574659Ratregion
5052863RH142317154142347888423479037Ratregion
5052931RH142357199141636383116364029Ratregion
5059996BI285802182141914178919142847Ratregion
5058266BI277889158141737295217373109Ratregion
5058372BG376722142142105978921059930Ratregion
5050370RH134017193141661295316613145Ratregion
5052444X53798109141873197818732086Ratregion
5052597RH125852248141752059217520839Ratregion
5052849RH142310181141721238717212567Ratregion
5053017RH142406182141874393118744111Ratregion
5051260RH134531183142106861521068797Ratregion
5054207RH143092126142892325228923377Ratregion
5041868RH129105152141884842018848571Ratregion
5044308RH130528218141721261617212833Ratregion
5044388RH1305740142350039323500570Ratregion
5041440RH128858220141719795217198171Ratregion
5046174RH131601187142866058128660767Ratregion
5046266RH131654202142105895321059155Ratregion
5044508RH130643204142215573322155947Ratregion
5046504RH131791209141752431117524519Ratregion
5047872RH132577182141944618319446364Ratregion
5049022RH133241198142095958920959786Ratregion
5046618RH131857220142559134825591567Ratregion
5049072RH133270180142118396221184141Ratregion
5049354RH133432196143312382433124019Ratregion
5047124RH132147209142105589021056098Ratregion
5048378RH132869186142095623820956423Ratregion
5048406RH132885212142106825821068469Ratregion
5039938RH127994183141711788817118070Ratregion
5042652RH129562210142197829821979350Ratregion
5039814RH127922217142243839022438607Ratregion
5039814RH127922217142215758222157799Ratregion
7192214Pf40141884881118849250Ratregion
5041078RH128650180141760428717604466Ratregion
5041152RH128692220141662285116623070Ratregion
5072726RH137017185141636411616364300Ratregion
5072436RH136848203141637077716370979Ratregion
5072524RH136899192141756574117565932Ratregion
5074204RH137881177142356820923568385Ratregion
5076386RH139145167141637119416371360Ratregion
5076506RH139215174143307520033075920Ratregion
5075520RH138641144142215496722155110Ratregion
5075572RH138671177141636897316369149Ratregion
5079754RH141183197141752141017521606Ratregion
5079956RH141300203141723538017235789Ratregion
5080098RH141381185142093359020933769Ratregion
5080268RH141482211141723409217234302Ratregion
5073362RH137392151141884509418845778Ratregion
5071212RH134952189141827214418272332Ratregion
5071242RH134969216142282654022826755Ratregion
5070640RH134619193142295367522953867Ratregion
5074812RH138232158141864035018640511Ratregion
5061766AW533278157142149025821490414Ratregion
5061802AW52704392142065992020660011Ratregion
5065078AI044222137141723240117233655Ratregion
5067258AU047865130141798333217983461Ratregion
5067360AU047801278141797086717971144Ratregion
5067752AU047557163141747685517477018Ratregion
5068144AU047322140143147373231473871Ratregion
5068512AU047101207141884210118842307Ratregion
5068594AU047051192143289794132898132Ratregion
5068612AU047039231143082853630828766Ratregion
5068754AU046952108142772576427725871Ratregion
5068852AU046886238142978954029789777Ratregion
5070205RH94533106141914177319141878Ratregion
5069716AU046317118141678129916781416Ratregion
5069748AU029143134142302691423027042Ratregion
5060098BF388492135142298937922989513Ratregion
5060344AW531504177142588607825886254Ratregion
5062022BF397208109141753632817536436Ratregion
5060436BE110064167142595646925956635Ratregion
5065806AI045017171141882041918820589Ratregion
5062074BF397398134142860781828607951Ratregion
5063608BE107836151142859934828599498Ratregion
5062318BE106508190142115401821154207Ratregion
5062780AW534411150141634772616347875Ratregion
5064422BI302173206142160916921609375Ratregion
5062824BI295036136142112667121126806Ratregion
5064708BE108365173143313376433133936Ratregion
5061502BE105338153142838918528389337Ratregion
5063246BI301575193143256113232561324Ratregion
5066546AU048293120142477710224777221Ratregion
5086935AA801220210141796956517969774Ratregion
5087526PMC275467P2208141919176119191968Ratregion
5086425AW529895205142106264421062848Ratregion
5082813BF390183163141867815618678318Ratregion
5088951AU048866176141902821019028385Ratregion
5089301AU049074121141672590216727383Ratregion
5089689AU049304225141695680616957030Ratregion
5084394AI233864231141881932418819554Ratregion
5082441BI274763218141649478816495005Ratregion
5090713AU049919211143255337632553586Ratregion
5085850AI231703161142095125720951417Ratregion
5086078AA891207188141711768617117873Ratregion
5084530AI176955135142047971320479847Ratregion
5085228AI598408157141932736919327525Ratregion
5085274AI176044198142093408720934281Ratregion
5085569BM390590214141710365317103866Ratregion
5507587Alb1128141919096719191798Ratregion
5503611UniSTS:465369103141917980319179905Ratregion
5504799UniSTS:275850174141914291019144273Ratregion
5504885ha3026130142524139325241522Ratregion
5504885ha3026130142499289624993025Ratregion
5505022Pf484141884860518848825Ratregion
5505835UniSTS:495883239142558982325590061Ratregion
5506869G46840210142069759320697802Ratregion
5507037fa55h08.s10141878929018789636Ratregion
5507037fa55h08.s10141878929018789535Ratregion
5507253AI0609080141713758917139262Ratregion
5499889UniSTS:235209266142115409021154355Ratregion
5499887UniSTS:235223175141637191116372085Ratregion
5502361RH124614257141943043019430686Ratregion
5503412G34499109141941446619414574Ratregion
5504734PMC86057P4438141919190019192337Ratregion
5501679UniSTS:265677293142270713022707422Ratregion
5501720UniSTS:266988152142594511425945265Ratregion
5502627RH125924233142040254520402776Ratregion
5502847Arhgap11a0142278750722788240Ratregion
6484684D14Uwm13214143025014530250358Ratregion
Position Markers

Flank 1: (D14Rat6)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01416,336,988 - 16,337,161NCBI
Rnor_5.01416,262,980 - 16,263,153UniSTS
RGSC_v3.41416,432,517 - 16,433,064RGD
RGSC_v3.41416,432,792 - 16,432,965UniSTS
RGSC_v3.11416,432,792 - 16,432,965RGD
Celera1414,277,653 - 14,277,826UniSTS
RH 3.4 Map14170.7UniSTS
RH 3.4 Map14170.7RGD
RH 2.0 Map14196.2RGD
SHRSP x BN Map146.9RGD
Peak: (D14Rat7)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01424,668,854 - 24,669,027NCBI
Rnor_5.01424,500,018 - 24,500,191UniSTS
RGSC_v3.41424,684,070 - 24,684,244RGD
RGSC_v3.41424,684,071 - 24,684,244UniSTS
RGSC_v3.11424,684,071 - 24,684,244RGD
Celera1422,250,625 - 22,250,798UniSTS
RH 3.4 Map14244.5UniSTS
RH 3.4 Map14244.5RGD
RH 2.0 Map14267.7RGD
SHRSP x BN Map1414.58RGD
FHH x ACI Map1426.1799RGD
Flank 2: (D14Rat10)
Rat AssemblyChrPosition (strand)Source
Rnor_6.01433,163,316 - 33,163,485NCBI
Rnor_5.01432,957,485 - 32,957,654UniSTS
RGSC_v3.41433,157,433 - 33,157,602UniSTS
RGSC_v3.41433,157,432 - 33,157,602RGD
RGSC_v3.11433,157,433 - 33,157,602RGD
RH 3.4 Map14396.7UniSTS
RH 3.4 Map14396.7RGD
RH 2.0 Map14358.0RGD
SHRSP x BN Map1420.42RGD
FHH x ACI Map1427.2299RGD


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14127597761Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14134403399Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14141333960Rat
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14141333960Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14142766285Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14222782519230541Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)14483323319909932Rat
2293089Iddm31Insulin dependent diabetes mellitus QTL 314.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)14483323319909932Rat
1300114Srn2Serum renin concentration QTL 23.27blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)14483323323004027Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14483323326466248Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14483323333040042Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14975643572854397Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin141053997755539977Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)141053997755539977Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)141072926861873323Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141268042430155192Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1412680424106641756Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141268061332593926Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141633698833163485Rat
631528Scl11Serum cholesterol level QTL 114.9blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)141915991938289187Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141916189343957503Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141919154143957628Rat
61413Eae10Experimental allergic encephalomyelitis QTL 103.5nervous system integrity trait (VT:0010566)percentage of study population developing relapsing-remitting experimental autoimmune encephalomyelitis during a period of time (CMO:0001402)141919166419909740Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)142018938665189386Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)142026622343957628Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)142145756566457565Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143259392686191589Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143303991261783215Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143316331673391571Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Srn3

RGD Curation Notes
Note Type Note Reference
qtl_general plasma renin, low salt diet following Lasix 727992
qtl_general additional information, including phenotype and mapping information, can be found at Genomic Map of Cardiovascular Phenotypes 727992