Atp8a1 (ATPase phospholipid transporting 8A1) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Atp8a1 (ATPase phospholipid transporting 8A1) Rattus norvegicus
Analyze
Symbol: Atp8a1
Name: ATPase phospholipid transporting 8A1
RGD ID: 1309619
Description: Predicted to enable phosphatidylserine flippase activity. Predicted to be involved in several processes, including learning; regulation of membrane lipid distribution; and synaptic vesicle endocytosis. Is active in synaptic vesicle membrane. Orthologous to human ATP8A1 (ATPase phospholipid transporting 8A1); INTERACTS WITH 17alpha-ethynylestradiol; 17beta-estradiol; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1; LOC289615; phospholipid-transporting ATPase IA; probable phospholipid-transporting ATPase IA
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81440,668,932 - 40,911,465 (+)NCBIGRCr8
mRatBN7.21440,315,013 - 40,557,572 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1440,315,049 - 40,554,611 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01441,972,398 - 42,210,555 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,015,347 - 42,206,311 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01441,770,273 - 42,007,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41442,923,309 - 43,165,666 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11442,961,030 - 43,105,186 (+)NCBI
Celera1439,507,549 - 39,715,322 (+)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (EXP,ISO)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2-palmitoylglycerol  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
acrylamide  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
casticin  (ISO)
CGP 52608  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
ivermectin  (ISO)
lead diacetate  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
mercury dibromide  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
omega-6 fatty acid  (ISO)
p-chloromercuribenzoic acid  (ISO)
paracetamol  (EXP)
paraquat  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
progesterone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
succimer  (ISO)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thapsigargin  (ISO)
titanium dioxide  (EXP)
tremolite asbestos  (ISO)
trichloroethene  (EXP)
trichostatin A  (ISO)
triphenyl phosphate  (EXP,ISO)
triptonide  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vincristine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Molecular profiling of synaptic vesicle docking sites reveals novel proteins but few differences between glutamatergic and GABAergic synapses. Boyken J, etal., Neuron. 2013 Apr 24;78(2):285-97. doi: 10.1016/j.neuron.2013.02.027.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. GOA pipeline RGD automated data pipeline
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19946888   PMID:20224745   PMID:20947505   PMID:21700703   PMID:21914794   PMID:22007859   PMID:23269685   PMID:23533145  


Genomics

Comparative Map Data
Atp8a1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81440,668,932 - 40,911,465 (+)NCBIGRCr8
mRatBN7.21440,315,013 - 40,557,572 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1440,315,049 - 40,554,611 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01441,972,398 - 42,210,555 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1442,015,347 - 42,206,311 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01441,770,273 - 42,007,304 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41442,923,309 - 43,165,666 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11442,961,030 - 43,105,186 (+)NCBI
Celera1439,507,549 - 39,715,322 (+)NCBICelera
Cytogenetic Map14p11NCBI
ATP8A1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38442,408,373 - 42,657,105 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl442,408,373 - 42,657,121 (-)EnsemblGRCh38hg38GRCh38
GRCh37442,410,390 - 42,659,122 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36442,105,147 - 42,353,879 (-)NCBINCBI36Build 36hg18NCBI36
Build 34442,255,562 - 42,499,818NCBI
Celera442,858,235 - 43,107,011 (-)NCBICelera
Cytogenetic Map4p13NCBI
HuRef441,731,596 - 41,980,330 (-)NCBIHuRef
CHM1_1442,410,660 - 42,659,431 (-)NCBICHM1_1
T2T-CHM13v2.0442,382,233 - 42,630,975 (-)NCBIT2T-CHM13v2.0
Atp8a1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39567,775,482 - 68,004,822 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl567,775,483 - 68,004,777 (-)EnsemblGRCm39 Ensembl
GRCm38567,618,139 - 67,847,484 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl567,618,140 - 67,847,434 (-)EnsemblGRCm38mm10GRCm38
MGSCv37568,009,379 - 68,238,670 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36567,897,275 - 68,126,566 (-)NCBIMGSCv36mm8
Celera564,913,563 - 65,141,756 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map536.15NCBI
Atp8a1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554435,142,049 - 5,362,147 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554435,142,049 - 5,362,031 (+)NCBIChiLan1.0ChiLan1.0
ATP8A1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2342,591,650 - 42,844,168 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1442,782,525 - 43,035,044 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0436,729,820 - 36,978,825 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1442,577,993 - 42,826,610 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl442,582,538 - 42,826,446 (-)Ensemblpanpan1.1panPan2
ATP8A1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11339,366,692 - 39,588,879 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1339,368,470 - 39,588,885 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1339,341,834 - 39,565,900 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01339,855,496 - 40,079,905 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1339,859,687 - 40,079,955 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11339,543,722 - 39,767,959 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01339,656,584 - 39,880,750 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01340,121,639 - 40,345,993 (-)NCBIUU_Cfam_GSD_1.0
Atp8a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528536,519,932 - 36,736,026 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364829,562,207 - 9,778,609 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364829,562,214 - 9,778,494 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATP8A1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl833,387,627 - 33,638,841 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1833,384,493 - 33,637,299 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2835,180,910 - 35,309,833 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATP8A1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1277,667,704 - 7,933,337 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl277,667,781 - 7,933,325 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604753,957,739 - 54,230,486 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atp8a1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476124,285,280 - 24,508,915 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476124,285,317 - 24,508,837 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Atp8a1
1442 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:200
Count of miRNA genes:108
Interacting mature miRNAs:113
Transcripts:ENSRNOT00000041793, ENSRNOT00000044017, ENSRNOT00000063985, ENSRNOT00000065214
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat

Markers in Region
D14Rat44  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.01442,122,557 - 42,122,758NCBIRnor6.0
RGSC_v3.41443,077,432 - 43,077,631UniSTSRGSC3.4
Celera1439,624,995 - 39,625,194UniSTS
RH 2.0 Map14472.8RGD
SHRSP x BN Map1428.34RGD
FHH x ACI Map1439.2099RGD
Cytogenetic Map14p11UniSTS
D14Rat31  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,476,240 - 40,476,463 (+)MAPPERmRatBN7.2
Rnor_6.01442,131,950 - 42,132,170NCBIRnor6.0
Rnor_5.01441,928,703 - 41,928,923UniSTSRnor5.0
RGSC_v3.41443,086,821 - 43,087,042RGDRGSC3.4
RGSC_v3.41443,086,822 - 43,087,042UniSTSRGSC3.4
RGSC_v3.11443,089,212 - 43,089,433RGD
Celera1439,634,430 - 39,634,650UniSTS
RH 2.0 Map14478.9RGD
SHRSP x BN Map1430.5RGD
FHH x ACI Map1439.2499RGD
Cytogenetic Map14p11UniSTS
D14Got86  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,453,731 - 40,453,868 (+)MAPPERmRatBN7.2
Rnor_6.01442,109,432 - 42,109,568NCBIRnor6.0
Rnor_5.01441,906,724 - 41,906,860UniSTSRnor5.0
RGSC_v3.41443,063,956 - 43,064,093RGDRGSC3.4
RGSC_v3.41443,063,957 - 43,064,093UniSTSRGSC3.4
RGSC_v3.11443,066,347 - 43,066,484RGD
Celera1439,611,656 - 39,611,792UniSTS
Cytogenetic Map14p11UniSTS
RH142480  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,319,182 - 40,319,454 (-)MAPPERmRatBN7.2
mRatBN7.21440,319,182 - 40,319,454 (+)MAPPERmRatBN7.2
Rnor_6.01441,026,888 - 41,027,159NCBIRnor6.0
Rnor_6.01441,976,553 - 41,976,824NCBIRnor6.0
Rnor_5.01441,774,420 - 41,774,691UniSTSRnor5.0
Rnor_5.01440,826,619 - 40,826,890UniSTSRnor5.0
RGSC_v3.41442,927,444 - 42,927,715UniSTSRGSC3.4
Celera1439,478,190 - 39,478,461UniSTS
Cytogenetic Map14p11UniSTS
RH143653  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,533,656 - 40,533,861 (+)MAPPERmRatBN7.2
Rnor_6.01442,186,630 - 42,186,834NCBIRnor6.0
Rnor_5.01441,983,383 - 41,983,587UniSTSRnor5.0
RGSC_v3.41443,145,499 - 43,145,703UniSTSRGSC3.4
Celera1439,691,398 - 39,691,602UniSTS
Cytogenetic Map14p11UniSTS
BF403317  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,410,057 - 40,410,220 (+)MAPPERmRatBN7.2
Rnor_6.01442,067,495 - 42,067,657NCBIRnor6.0
Rnor_5.01441,865,242 - 41,865,404UniSTSRnor5.0
RGSC_v3.41443,018,755 - 43,018,917UniSTSRGSC3.4
Celera1439,568,187 - 39,568,349UniSTS
Cytogenetic Map14p11UniSTS
RH142981  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,481,426 - 40,481,597 (+)MAPPERmRatBN7.2
Rnor_6.01442,137,133 - 42,137,303NCBIRnor6.0
Rnor_5.01441,933,886 - 41,934,056UniSTSRnor5.0
Celera1439,639,612 - 39,639,782UniSTS
Cytogenetic Map14p11UniSTS
RH140333  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,509,833 - 40,510,081 (+)MAPPERmRatBN7.2
Rnor_6.01442,163,202 - 42,163,449NCBIRnor6.0
Rnor_5.01441,959,955 - 41,960,202UniSTSRnor5.0
RGSC_v3.41443,121,680 - 43,121,927UniSTSRGSC3.4
Celera1439,667,612 - 39,667,859UniSTS
RH 3.4 Map11284.9UniSTS
Cytogenetic Map14p11UniSTS
RH141950  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,459,634 - 40,459,833 (+)MAPPERmRatBN7.2
Rnor_6.01442,115,335 - 42,115,533NCBIRnor6.0
Rnor_5.01441,912,627 - 41,912,825UniSTSRnor5.0
RGSC_v3.41443,069,860 - 43,070,058UniSTSRGSC3.4
Celera1439,617,559 - 39,617,757UniSTS
Cytogenetic Map14p11UniSTS
BE119187  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,554,345 - 40,554,518 (+)MAPPERmRatBN7.2
Rnor_6.01442,207,329 - 42,207,501NCBIRnor6.0
Rnor_5.01442,004,082 - 42,004,254UniSTSRnor5.0
RGSC_v3.41443,166,198 - 43,166,370UniSTSRGSC3.4
Celera1439,712,096 - 39,712,268UniSTS
Cytogenetic Map14p11UniSTS
AU048779  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21440,476,245 - 40,476,483 (+)MAPPERmRatBN7.2
Rnor_6.01442,131,955 - 42,132,190NCBIRnor6.0
Rnor_5.01441,928,708 - 41,928,943UniSTSRnor5.0
RGSC_v3.41443,086,827 - 43,087,062UniSTSRGSC3.4
Celera1439,634,435 - 39,634,670UniSTS
Cytogenetic Map14p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001426995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008765514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092726 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092730 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063272924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000044017   ⟹   ENSRNOP00000039929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,387,872 - 40,554,611 (+)Ensembl
Rnor_6.0 Ensembl1442,015,347 - 42,206,311 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000063985   ⟹   ENSRNOP00000060686
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,315,049 - 40,377,942 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096719   ⟹   ENSRNOP00000097076
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,315,049 - 40,554,611 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099913   ⟹   ENSRNOP00000077596
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,315,057 - 40,554,611 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000113166   ⟹   ENSRNOP00000082854
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,315,049 - 40,554,611 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117167   ⟹   ENSRNOP00000078899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1440,315,147 - 40,554,611 (+)Ensembl
RefSeq Acc Id: NM_001426995   ⟹   NP_001413924
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81440,668,953 - 40,911,465 (+)NCBI
RefSeq Acc Id: XM_006250980   ⟹   XP_006251042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81440,706,588 - 40,911,465 (+)NCBI
mRatBN7.21440,352,649 - 40,557,572 (+)NCBI
Rnor_6.01442,010,297 - 42,210,555 (+)NCBI
Rnor_5.01441,770,273 - 42,007,304 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039092726   ⟹   XP_038948654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81440,702,745 - 40,911,465 (+)NCBI
mRatBN7.21440,348,833 - 40,557,572 (+)NCBI
RefSeq Acc Id: XM_039092728   ⟹   XP_038948656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81440,702,745 - 40,911,465 (+)NCBI
mRatBN7.21440,348,833 - 40,557,572 (+)NCBI
RefSeq Acc Id: XM_039092729   ⟹   XP_038948657
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81440,702,745 - 40,911,465 (+)NCBI
mRatBN7.21440,348,833 - 40,557,572 (+)NCBI
RefSeq Acc Id: XM_039092730   ⟹   XP_038948658
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81440,668,932 - 40,911,465 (+)NCBI
mRatBN7.21440,315,013 - 40,557,572 (+)NCBI
RefSeq Acc Id: XM_063272922   ⟹   XP_063128992
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81440,668,933 - 40,911,465 (+)NCBI
RefSeq Acc Id: XM_063272923   ⟹   XP_063128993
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81440,668,934 - 40,911,465 (+)NCBI
RefSeq Acc Id: XM_063272924   ⟹   XP_063128994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81440,737,386 - 40,911,465 (+)NCBI
RefSeq Acc Id: XP_006251042   ⟸   XM_006250980
- Peptide Label: isoform X7
- UniProtKB: A0A8I5ZKC1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000039929   ⟸   ENSRNOT00000044017
RefSeq Acc Id: XP_038948658   ⟸   XM_039092730
- Peptide Label: isoform X4
- UniProtKB: A6JDA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948654   ⟸   XM_039092726
- Peptide Label: isoform X1
- UniProtKB: A6JDA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948657   ⟸   XM_039092729
- Peptide Label: isoform X3
- UniProtKB: A6JDA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948656   ⟸   XM_039092728
- Peptide Label: isoform X2
- UniProtKB: A6JDA0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077596   ⟸   ENSRNOT00000099913
Ensembl Acc Id: ENSRNOP00000082854   ⟸   ENSRNOT00000113166
Ensembl Acc Id: ENSRNOP00000097076   ⟸   ENSRNOT00000096719
Ensembl Acc Id: ENSRNOP00000060686   ⟸   ENSRNOT00000063985
Ensembl Acc Id: ENSRNOP00000078899   ⟸   ENSRNOT00000117167
RefSeq Acc Id: XP_063128992   ⟸   XM_063272922
- Peptide Label: isoform X5
- UniProtKB: A6JDA0 (UniProtKB/TrEMBL),   A0A8I5ZXX6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128993   ⟸   XM_063272923
- Peptide Label: isoform X6
- UniProtKB: A6JDA0 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001413924   ⟸   NM_001426995
- UniProtKB: A6JDA0 (UniProtKB/TrEMBL),   A0A8I6AVY6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063128994   ⟸   XM_063272924
- Peptide Label: isoform X8
- UniProtKB: A0A8I6G2I8 (UniProtKB/TrEMBL)
Protein Domains
P-type ATPase C-terminal   P-type ATPase N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LUT4-F1-model_v2 AlphaFold F1LUT4 1-985 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309619 AgrOrtholog
BioCyc Gene G2FUF-15793 BioCyc
Ensembl Genes ENSRNOG00000034200 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000044017.6 UniProtKB/TrEMBL
  ENSRNOT00000063985.5 UniProtKB/TrEMBL
  ENSRNOT00000096719.1 UniProtKB/TrEMBL
  ENSRNOT00000099913.1 UniProtKB/TrEMBL
  ENSRNOT00000113166.1 UniProtKB/TrEMBL
  ENSRNOT00000117167.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.1110.10 UniProtKB/TrEMBL
  3.40.50.1000 UniProtKB/TrEMBL
  Calcium-transporting ATPase, cytoplasmic transduction domain A UniProtKB/TrEMBL
InterPro ATPase_P-typ_ATPase-assoc-dom UniProtKB/TrEMBL
  ATPase_P-typ_cyto_domN UniProtKB/TrEMBL
  ATPase_P-typ_P_site UniProtKB/TrEMBL
  ATPase_P-typ_Plipid-transl UniProtKB/TrEMBL
  ATPase_P-typ_TM_dom UniProtKB/TrEMBL
  Cation_transp_P_typ_ATPase UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  HAD-like_sf UniProtKB/TrEMBL
  P-type_ATPase_N UniProtKB/TrEMBL
  P_typ_ATPase_c UniProtKB/TrEMBL
  P_typ_ATPase_HD_dom UniProtKB/TrEMBL
NCBI Gene 289615 ENTREZGENE
PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE IA UniProtKB/TrEMBL
  PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE UniProtKB/TrEMBL
Pfam Cation_ATPase UniProtKB/TrEMBL
  E1-E2_ATPase UniProtKB/TrEMBL
  PhoLip_ATPase_C UniProtKB/TrEMBL
  PhoLip_ATPase_N UniProtKB/TrEMBL
PhenoGen Atp8a1 PhenoGen
PRINTS CATATPASE UniProtKB/TrEMBL
PROSITE ATPASE_E1_E2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000034200 RatGTEx
Superfamily-SCOP ATPase_cation_domN UniProtKB/TrEMBL
  HAD-like_dom UniProtKB/TrEMBL
  SSF81653 UniProtKB/TrEMBL
  SSF81665 UniProtKB/TrEMBL
UniProt A0A8I5ZKC1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZXX6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AVY6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G2I8 ENTREZGENE, UniProtKB/TrEMBL
  A6JDA0 ENTREZGENE, UniProtKB/TrEMBL
  D3ZJK8_RAT UniProtKB/TrEMBL
  F1LUT4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-02-17 Atp8a1  ATPase phospholipid transporting 8A1  Atp8a1  ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Atp8a1  ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1   Atp8a1_predicted  ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Atp8a1_predicted  ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED