Dcun1d4 (defective in cullin neddylation 1 domain containing 4) - Rat Genome Database

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Gene: Dcun1d4 (defective in cullin neddylation 1 domain containing 4) Rattus norvegicus
Analyze
Symbol: Dcun1d4
Name: defective in cullin neddylation 1 domain containing 4
RGD ID: 1310422
Description: Predicted to enable cullin family protein binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin-like protein binding activity. Predicted to be involved in positive regulation of protein neddylation and protein neddylation. Predicted to be located in nucleus. Predicted to be part of ubiquitin ligase complex. Orthologous to human DCUN1D4 (defective in cullin neddylation 1 domain containing 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: DCN1, defective in cullin neddylation 1, domain containing 4; DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae); DCN1-like protein 4; LOC360928; RGD1310422; similar to hypothetical protein MGC2714
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81435,006,792 - 35,087,285 (-)NCBIGRCr8
mRatBN7.21434,652,723 - 34,733,122 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1434,652,723 - 34,733,207 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1435,013,112 - 35,083,493 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01436,320,733 - 36,391,118 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01434,806,189 - 34,876,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01437,210,721 - 37,294,517 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1437,210,721 - 37,294,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01437,033,185 - 37,113,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41437,051,133 - 37,128,945 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11437,056,449 - 37,141,230 (-)NCBI
Celera1433,915,466 - 33,985,941 (-)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
cadmium dichloride  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
chromium(6+)  (ISO)
Cuprizon  (EXP)
dexamethasone  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
dorsomorphin  (ISO)
endosulfan  (EXP)
ethanol  (ISO)
fenthion  (ISO)
flutamide  (EXP)
folic acid  (ISO)
FR900359  (ISO)
glafenine  (EXP)
indometacin  (ISO)
inulin  (ISO)
L-methionine  (ISO)
methapyrilene  (EXP)
methidathion  (ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N,N-diethyl-m-toluamide  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
permethrin  (EXP)
phenylmercury acetate  (ISO)
picoxystrobin  (ISO)
pirinixic acid  (ISO)
poly(I:C)  (EXP)
potassium chromate  (ISO)
potassium dichromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
rotenone  (ISO)
Salinomycin  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sulfadimethoxine  (EXP)
temozolomide  (ISO)
tetrachloromethane  (ISO)
titanium dioxide  (ISO)
trichostatin A  (ISO)
triphenyl phosphate  (ISO)
triptonide  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vincristine  (ISO)
vorinostat  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Dcun1d4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81435,006,792 - 35,087,285 (-)NCBIGRCr8
mRatBN7.21434,652,723 - 34,733,122 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1434,652,723 - 34,733,207 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1435,013,112 - 35,083,493 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01436,320,733 - 36,391,118 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01434,806,189 - 34,876,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01437,210,721 - 37,294,517 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1437,210,721 - 37,294,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01437,033,185 - 37,113,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41437,051,133 - 37,128,945 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11437,056,449 - 37,141,230 (-)NCBI
Celera1433,915,466 - 33,985,941 (-)NCBICelera
Cytogenetic Map14p11NCBI
DCUN1D4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38451,833,884 - 51,916,837 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl451,843,000 - 51,916,837 (+)EnsemblGRCh38hg38GRCh38
GRCh37452,709,319 - 52,783,003 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36452,404,033 - 52,477,760 (+)NCBINCBI36Build 36hg18NCBI36
Celera450,204,352 - 50,278,086 (+)NCBICelera
Cytogenetic Map4q12NCBI
HuRef448,650,544 - 48,724,459 (+)NCBIHuRef
CHM1_1452,744,405 - 52,818,078 (+)NCBICHM1_1
T2T-CHM13v2.0455,319,835 - 55,402,788 (+)NCBIT2T-CHM13v2.0
Dcun1d4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39573,638,353 - 73,718,137 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl573,638,343 - 73,718,137 (+)EnsemblGRCm39 Ensembl
GRCm38573,481,010 - 73,560,794 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl573,481,000 - 73,560,794 (+)EnsemblGRCm38mm10GRCm38
MGSCv37573,882,321 - 73,952,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36573,770,217 - 73,839,921 (+)NCBIMGSCv36mm8
Celera570,744,312 - 70,824,269 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map538.85NCBI
Dcun1d4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544718,562,946 - 18,652,782 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544718,562,946 - 18,641,179 (-)NCBIChiLan1.0ChiLan1.0
DCUN1D4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2377,903,936 - 77,977,102 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1478,108,033 - 78,181,204 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0472,050,161 - 72,123,339 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1478,601,430 - 78,674,553 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl478,604,682 - 78,674,986 (-)Ensemblpanpan1.1panPan2
DCUN1D4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11344,812,951 - 44,894,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1344,812,932 - 44,891,454 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1344,765,716 - 44,847,533 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01345,415,171 - 45,496,926 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1345,426,998 - 45,496,923 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11345,101,976 - 45,171,640 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01344,625,094 - 44,706,777 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01345,502,139 - 45,583,870 (+)NCBIUU_Cfam_GSD_1.0
Dcun1d4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528531,233,934 - 31,315,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648214,982,588 - 15,064,321 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648214,993,097 - 15,064,305 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCUN1D4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl838,982,680 - 39,060,715 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1838,982,685 - 39,060,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2841,146,253 - 41,236,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCUN1D4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1716,525,560 - 16,599,057 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl716,528,487 - 16,598,900 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606617,592,908 - 17,669,493 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcun1d4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476117,792,569 - 17,871,363 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476117,790,671 - 17,871,602 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dcun1d4
280 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:376
Count of miRNA genes:219
Interacting mature miRNAs:264
Transcripts:ENSRNOT00000065458
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat

Markers in Region
RH139013  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21434,704,339 - 34,704,466 (+)MAPPERmRatBN7.2
Rnor_6.01437,262,665 - 37,262,791NCBIRnor6.0
Rnor_5.01437,085,129 - 37,085,255UniSTSRnor5.0
RGSC_v3.41437,103,434 - 37,103,560UniSTSRGSC3.4
Celera1433,967,037 - 33,967,163UniSTS
Cytogenetic Map14p11UniSTS
AI072690  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21434,720,515 - 34,720,707 (+)MAPPERmRatBN7.2
Rnor_6.01437,281,887 - 37,282,078NCBIRnor6.0
Rnor_5.01437,101,021 - 37,101,212UniSTSRnor5.0
RGSC_v3.41437,126,231 - 37,126,422UniSTSRGSC3.4
Celera1433,983,226 - 33,983,417UniSTS
Cytogenetic Map14p11UniSTS
RH137196  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21434,652,791 - 34,652,971 (+)MAPPERmRatBN7.2
Rnor_6.01437,210,790 - 37,210,969NCBIRnor6.0
Rnor_5.01437,033,254 - 37,033,433UniSTSRnor5.0
RGSC_v3.41437,051,202 - 37,051,381UniSTSRGSC3.4
Celera1433,915,535 - 33,915,714UniSTS
Cytogenetic Map14p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000065458   ⟹   ENSRNOP00000059462
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1434,652,723 - 34,723,231 (-)Ensembl
Rnor_6.0 Ensembl1437,210,721 - 37,284,601 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000081087   ⟹   ENSRNOP00000069290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1434,652,730 - 34,733,207 (-)Ensembl
Rnor_6.0 Ensembl1437,213,828 - 37,294,472 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102842   ⟹   ENSRNOP00000094828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1434,652,723 - 34,723,231 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117852   ⟹   ENSRNOP00000087468
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1434,652,730 - 34,706,645 (-)Ensembl
RefSeq Acc Id: NM_001108359   ⟹   NP_001101829
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81435,006,792 - 35,077,289 (-)NCBI
mRatBN7.21434,652,723 - 34,723,231 (-)NCBI
Rnor_6.01437,210,721 - 37,284,601 (-)NCBI
Rnor_5.01437,033,185 - 37,113,631 (-)NCBI
RGSC_v3.41437,051,133 - 37,128,945 (-)RGD
Celera1433,915,466 - 33,985,941 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250907   ⟹   XP_006250969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81435,006,799 - 35,077,310 (-)NCBI
mRatBN7.21434,652,730 - 34,723,247 (-)NCBI
Rnor_6.01437,210,728 - 37,284,621 (-)NCBI
Rnor_5.01437,033,185 - 37,113,631 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599288   ⟹   XP_017454777
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81435,006,799 - 35,087,285 (-)NCBI
mRatBN7.21434,652,730 - 34,733,121 (-)NCBI
Rnor_6.01437,210,728 - 37,294,517 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092176   ⟹   XP_038948104
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81435,006,799 - 35,087,212 (-)NCBI
mRatBN7.21434,652,730 - 34,733,122 (-)NCBI
RefSeq Acc Id: XM_039092177   ⟹   XP_038948105
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81435,006,799 - 35,076,335 (-)NCBI
mRatBN7.21434,652,730 - 34,722,284 (-)NCBI
RefSeq Acc Id: XM_063273337   ⟹   XP_063129407
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81435,006,799 - 35,077,336 (-)NCBI
RefSeq Acc Id: XM_063273338   ⟹   XP_063129408
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81435,012,393 - 35,087,211 (-)NCBI
RefSeq Acc Id: XM_063273339   ⟹   XP_063129409
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81435,006,799 - 35,057,524 (-)NCBI
RefSeq Acc Id: XM_063273340   ⟹   XP_063129410
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81435,012,393 - 35,087,202 (-)NCBI
RefSeq Acc Id: NP_001101829   ⟸   NM_001108359
- UniProtKB: D4A0F7 (UniProtKB/TrEMBL),   A6JD31 (UniProtKB/TrEMBL),   A0A8I6A381 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250969   ⟸   XM_006250907
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_017454777   ⟸   XM_017599288
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JUZ4 (UniProtKB/TrEMBL),   A0A8I6A381 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000059462   ⟸   ENSRNOT00000065458
Ensembl Acc Id: ENSRNOP00000069290   ⟸   ENSRNOT00000081087
RefSeq Acc Id: XP_038948104   ⟸   XM_039092176
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038948105   ⟸   XM_039092177
- Peptide Label: isoform X6
Ensembl Acc Id: ENSRNOP00000094828   ⟸   ENSRNOT00000102842
Ensembl Acc Id: ENSRNOP00000087468   ⟸   ENSRNOT00000117852
RefSeq Acc Id: XP_063129407   ⟸   XM_063273337
- Peptide Label: isoform X3
- UniProtKB: A0A8I6B1J8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129409   ⟸   XM_063273339
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063129408   ⟸   XM_063273338
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063129410   ⟸   XM_063273340
- Peptide Label: isoform X7
Protein Domains
DCUN1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2JUZ4-F1-model_v2 AlphaFold A0A0G2JUZ4 1-306 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699291
Promoter ID:EPDNEW_R9816
Type:initiation region
Name:Dcun1d4_1
Description:defective in cullin neddylation 1 domain containing 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9817  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01437,284,600 - 37,284,660EPDNEW
RGD ID:13699299
Promoter ID:EPDNEW_R9817
Type:multiple initiation site
Name:Dcun1d4_2
Description:defective in cullin neddylation 1 domain containing 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R9816  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01437,294,480 - 37,294,540EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1310422 AgrOrtholog
BioCyc Gene G2FUF-15869 BioCyc
Ensembl Genes ENSRNOG00000002152 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065458.3 UniProtKB/TrEMBL
  ENSRNOT00000081087.2 UniProtKB/TrEMBL
  ENSRNOT00000102842.1 UniProtKB/TrEMBL
  ENSRNOT00000117852.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.238.200 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro DCN-prot UniProtKB/TrEMBL
  DCN1-like_PONY UniProtKB/TrEMBL
  DUF298 UniProtKB/TrEMBL
KEGG Report rno:360928 UniProtKB/TrEMBL
NCBI Gene 360928 ENTREZGENE
PANTHER DCN1-LIKE PROTEIN 4 UniProtKB/TrEMBL
  DUF298 UniProtKB/TrEMBL
Pfam DUF298 UniProtKB/TrEMBL
PhenoGen Dcun1d4 PhenoGen
PROSITE DCUN1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000002152 RatGTEx
UniProt A0A0G2JUZ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A381 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6B1J8 ENTREZGENE, UniProtKB/TrEMBL
  A6JD31 ENTREZGENE, UniProtKB/TrEMBL
  D4A0F7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-01-20 Dcun1d4  defective in cullin neddylation 1 domain containing 4  Dcun1d4  DCN1, defective in cullin neddylation 1, domain containing 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-07-09 Dcun1d4  DCN1, defective in cullin neddylation 1, domain containing 4  Dcun1d4  DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 Dcun1d4  DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)   Dcun1d4_predicted  DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Dcun1d4_predicted  DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) (predicted)  RGD1310422_predicted  similar to hypothetical protein MGC2714 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-20 RGD1310422_predicted  similar to hypothetical protein MGC2714 (predicted)  LOC360928_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC360928_predicted  similar to hypothetical protein MGC2714 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL