DCUN1D4 (defective in cullin neddylation 1 domain containing 4) - Rat Genome Database

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Gene: DCUN1D4 (defective in cullin neddylation 1 domain containing 4) Pan paniscus
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Symbol: DCUN1D4
Name: defective in cullin neddylation 1 domain containing 4
RGD ID: 11860834
Description: ENCODES a protein that exhibits cullin family protein binding (inferred); ubiquitin conjugating enzyme binding (inferred); ubiquitin-like protein binding (inferred); INVOLVED IN positive regulation of protein neddylation (inferred); protein neddylation (inferred); FOUND IN nucleus (inferred); ubiquitin ligase complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DCN1-like protein 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2377,903,936 - 77,977,102 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1478,108,033 - 78,181,204 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0472,050,161 - 72,123,339 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1478,601,430 - 78,674,553 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl478,604,682 - 78,674,986 (-)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DCUN1D4Bonobopositive regulation of protein neddylation involved_inIEAUniProtKB:Q92564|ensembl:ENSP00000334625150520179 EnsemblGO_REF:0000107
DCUN1D4Bonoboprotein neddylation involved_inIEAPANTHER:PTN000264528|PANTHER:PTN000264529150520179 TreeGrafterGO_REF:0000118

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DCUN1D4Bonobonucleus located_inIEAUniProtKB:Q92564|ensembl:ENSP00000334625150520179 EnsemblGO_REF:0000107
DCUN1D4Bonoboubiquitin ligase complex part_ofIEAPANTHER:PTN000264528|PANTHER:PTN000264529150520179 TreeGrafterGO_REF:0000118

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
DCUN1D4Bonobocullin family protein binding enablesIEAPANTHER:PTN000264528|PANTHER:PTN000264529150520179 TreeGrafterGO_REF:0000118
DCUN1D4Bonobocullin family protein binding enablesIEAUniProtKB:Q92564|ensembl:ENSP00000334625150520179 EnsemblGO_REF:0000107
DCUN1D4Bonoboprotein binding enablesISOUniProtKB:P610819068941 PMID:23201271UniProtPMID:23201271
DCUN1D4Bonoboprotein binding enablesISOUniProtKB:P29991-PRO_00000379469068941 PMID:21911577IntActPMID:21911577
DCUN1D4Bonoboprotein binding enablesISOUniProtKB:P62877|UniProtKB:Q13616|UniProtKB:Q13617|UniProtKB:Q13618|UniProtKB:Q86VP6|UniProtKB:Q93034|UniProtKB:Q9UBF69068941 PMID:26906416UniProtPMID:26906416
DCUN1D4Bonoboubiquitin conjugating enzyme binding enablesIEAPANTHER:PTN000264528|PANTHER:PTN000264529150520179 TreeGrafterGO_REF:0000118
DCUN1D4Bonoboubiquitin-like protein binding enablesIEAPANTHER:PTN000264528|PANTHER:PTN000264529150520179 TreeGrafterGO_REF:0000118

PMID:30032202  



DCUN1D4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2377,903,936 - 77,977,102 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1478,108,033 - 78,181,204 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0472,050,161 - 72,123,339 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1478,601,430 - 78,674,553 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl478,604,682 - 78,674,986 (-)Ensemblpanpan1.1panPan2
DCUN1D4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38451,833,884 - 51,916,837 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl451,843,000 - 51,916,837 (+)EnsemblGRCh38hg38GRCh38
GRCh37452,709,319 - 52,783,003 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36452,404,033 - 52,477,760 (+)NCBINCBI36Build 36hg18NCBI36
Celera450,204,352 - 50,278,086 (+)NCBICelera
Cytogenetic Map4q12NCBI
HuRef448,650,544 - 48,724,459 (+)NCBIHuRef
CHM1_1452,744,405 - 52,818,078 (+)NCBICHM1_1
T2T-CHM13v2.0455,319,835 - 55,402,788 (+)NCBIT2T-CHM13v2.0
Dcun1d4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39573,638,353 - 73,718,137 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl573,638,343 - 73,718,137 (+)EnsemblGRCm39 Ensembl
GRCm38573,481,010 - 73,560,794 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl573,481,000 - 73,560,794 (+)EnsemblGRCm38mm10GRCm38
MGSCv37573,882,321 - 73,952,025 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36573,770,217 - 73,839,921 (+)NCBIMGSCv36mm8
Celera570,744,312 - 70,824,269 (+)NCBICelera
Cytogenetic Map5C3.3NCBI
cM Map538.85NCBI
Dcun1d4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81435,006,792 - 35,087,285 (-)NCBIGRCr8
mRatBN7.21434,652,723 - 34,733,122 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1434,652,723 - 34,733,207 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1435,013,112 - 35,083,493 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01436,320,733 - 36,391,118 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01434,806,189 - 34,876,575 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01437,210,721 - 37,294,517 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1437,210,721 - 37,294,472 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01437,033,185 - 37,113,631 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41437,051,133 - 37,128,945 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11437,056,449 - 37,141,230 (-)NCBI
Celera1433,915,466 - 33,985,941 (-)NCBICelera
Cytogenetic Map14p11NCBI
Dcun1d4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544718,562,946 - 18,652,782 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544718,562,946 - 18,641,179 (-)NCBIChiLan1.0ChiLan1.0
DCUN1D4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11344,812,951 - 44,894,654 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1344,812,932 - 44,891,454 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1344,765,716 - 44,847,533 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01345,415,171 - 45,496,926 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1345,426,998 - 45,496,923 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11345,101,976 - 45,171,640 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01344,625,094 - 44,706,777 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01345,502,139 - 45,583,870 (+)NCBIUU_Cfam_GSD_1.0
Dcun1d4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528531,233,934 - 31,315,687 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648214,982,588 - 15,064,321 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648214,993,097 - 15,064,305 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DCUN1D4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl838,982,680 - 39,060,715 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1838,982,685 - 39,060,719 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2841,146,253 - 41,236,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DCUN1D4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1716,525,560 - 16,599,057 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl716,528,487 - 16,598,900 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606617,592,908 - 17,669,493 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dcun1d4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476117,792,569 - 17,871,363 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476117,790,671 - 17,871,602 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.





RefSeq Transcripts XM_008953924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSPPAT00000062834   ⟹   ENSPPAP00000039921
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl478,604,682 - 78,674,847 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000062837   ⟹   ENSPPAP00000039924
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl478,604,682 - 78,674,503 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000062842   ⟹   ENSPPAP00000039929
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl478,604,682 - 78,655,210 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000062843   ⟹   ENSPPAP00000039930
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl478,604,682 - 78,655,210 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000062847   ⟹   ENSPPAP00000039934
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl478,626,297 - 78,674,986 (-)Ensembl
Ensembl Acc Id: ENSPPAT00000062850   ⟹   ENSPPAP00000039937
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl478,630,938 - 78,674,503 (-)Ensembl
RefSeq Acc Id: XM_008953924   ⟹   XP_008952172
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2377,903,936 - 77,977,102 (-)NCBI
NHGRI_mPanPan1478,108,033 - 78,181,204 (-)NCBI
Mhudiblu_PPA_v0472,050,161 - 72,123,339 (-)NCBI
PanPan1.1478,601,430 - 78,674,553 (-)NCBI
Sequence:
Protein RefSeqs XP_008952172 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000039921.1
  ENSPPAP00000039924.1
  ENSPPAP00000039929.1
  ENSPPAP00000039930.1
  ENSPPAP00000039934.1
  ENSPPAP00000039937.1
RefSeq Acc Id: XP_008952172   ⟸   XM_008953924
- UniProtKB: A0A2R9CDH0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSPPAP00000039934   ⟸   ENSPPAT00000062847
Ensembl Acc Id: ENSPPAP00000039937   ⟸   ENSPPAT00000062850
Ensembl Acc Id: ENSPPAP00000039921   ⟸   ENSPPAT00000062834
Ensembl Acc Id: ENSPPAP00000039924   ⟸   ENSPPAT00000062837
DCUN1



1 to 25 of 25 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSPPAG00000042595 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000062834.1 UniProtKB/TrEMBL
  ENSPPAT00000062837.1 UniProtKB/TrEMBL
  ENSPPAT00000062842.1 UniProtKB/TrEMBL
  ENSPPAT00000062843.1 UniProtKB/TrEMBL
  ENSPPAT00000062847.1 UniProtKB/TrEMBL
  ENSPPAT00000062850.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.238.200 UniProtKB/TrEMBL
  EF-hand UniProtKB/TrEMBL
InterPro DCN-prot UniProtKB/TrEMBL
  DCN1-like_PONY UniProtKB/TrEMBL
  EF-hand-dom_pair UniProtKB/TrEMBL
  PONY_dom UniProtKB/TrEMBL
NCBI Gene DCUN1D4 ENTREZGENE
PANTHER DCN1-LIKE PROTEIN 4 UniProtKB/TrEMBL
  PTHR12281 UniProtKB/TrEMBL
Pfam Cullin_binding UniProtKB/TrEMBL
PROSITE DCUN1 UniProtKB/TrEMBL
Superfamily-SCOP SSF47473 UniProtKB/TrEMBL
UniProt A0A2R9CDA6_PANPA UniProtKB/TrEMBL
  A0A2R9CDB7_PANPA UniProtKB/TrEMBL
  A0A2R9CDH0 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CDH4_PANPA UniProtKB/TrEMBL
  A0A2R9CDH9_PANPA UniProtKB/TrEMBL
  A0A2R9CNS3_PANPA UniProtKB/TrEMBL
1 to 25 of 25 rows