Gene: Exoc1l (exocyst complex component 1 like) Rattus norvegicus |
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Analyze |
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Symbol: |
Exoc1l |
Name: |
exocyst complex component 1 like |
RGD ID: |
1591303 |
Description: |
Orthologous to human EXOC1L (exocyst complex component 1 like); INTERACTS WITH 4,4'-sulfonyldiphenol (ortholog); benzo[a]pyrene (ortholog); lipopolysaccharide (ortholog). |
Type: |
protein-coding
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RefSeq Status: |
VALIDATED |
Previously known as: |
exocyst complex component 1-like; LOC686911; similar to Exocyst complex component 1 (Exocyst complex component Sec3) |
RGD Orthologs |
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Alliance Genes |
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More Info |
more info ...
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More Info |
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Latest Assembly: |
mRatBN7.2 - mRatBN7.2 Assembly |
Position: |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 14 | 32,027,702 - 32,062,413 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 14 | 31,673,465 - 31,698,175 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 31,673,636 - 31,698,001 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 14 | 32,050,583 - 32,075,210 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 14 | 33,358,470 - 33,383,097 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 14 | 31,843,587 - 31,868,216 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 14 | 34,192,155 - 34,219,497 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 34,194,217 - 34,218,961 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 33,971,786 - 33,997,807 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 14 | 30,985,045 - 31,011,970 (-) | NCBI | | Celera | | | Cytogenetic Map | 14 | p11 | NCBI | | | | |
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JBrowse: |
View Region in Genome Browser (JBrowse)
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Model |
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References
Genomics
Comparative Map Data
Exoc1l (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 14 | 32,027,702 - 32,062,413 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 14 | 31,673,465 - 31,698,175 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 14 | 31,673,636 - 31,698,001 (-) | Ensembl | | mRatBN7.2 Ensembl | | | UTH_Rnor_SHR_Utx | 14 | 32,050,583 - 32,075,210 (-) | NCBI | Rnor_SHR | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 14 | 33,358,470 - 33,383,097 (-) | NCBI | Rnor_SHRSP | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 14 | 31,843,587 - 31,868,216 (-) | NCBI | Rnor_WKY | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 14 | 34,192,155 - 34,219,497 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 14 | 34,194,217 - 34,218,961 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 14 | 33,971,786 - 33,997,807 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | Celera | 14 | 30,985,045 - 31,011,970 (-) | NCBI | | Celera | | | Cytogenetic Map | 14 | p11 | NCBI | | | | |
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EXOC1L (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 4 | 55,819,790 - 55,837,489 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 4 | 55,819,790 - 55,837,489 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 4 | 56,685,956 - 56,703,655 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 4 | 56,380,950 - 56,398,274 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 4 | 54,192,629 - 54,209,824 (+) | NCBI | | Celera | | | Cytogenetic Map | 4 | q12 | NCBI | | | | | HuRef | 4 | 52,640,110 - 52,657,305 (+) | NCBI | | HuRef | | | CHM1_1 | 4 | 56,721,385 - 56,738,581 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 4 | 59,307,935 - 59,325,634 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Exoc1l (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 5 | 76,631,924 - 76,664,475 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 76,631,887 - 76,664,496 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 5 | 76,484,077 - 76,516,628 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 76,484,040 - 76,516,649 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 5 | 76,913,102 - 76,945,653 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 77,559,106 - 77,591,359 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 73,752,158 - 73,784,597 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | C3.3 | NCBI | | | | | cM Map | 5 | 41.23 | NCBI | | | | |
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EXOC1L (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 3 | 73,948,069 - 73,966,021 (-) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 4 | 74,153,524 - 74,171,478 (-) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 4 | 68,091,792 - 68,109,741 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 4 | 74,659,663 - 74,677,206 (-) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 4 | 74,659,694 - 74,677,067 (-) | Ensembl | panpan1.1 | | panPan2 | |
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EXOC1L (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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CanFam3.1 | 13 | 48,073,183 - 48,090,042 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 13 | 48,073,596 - 48,089,911 (+) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 13 | 47,965,050 - 47,982,159 (+) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 13 | 48,687,409 - 48,704,529 (+) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 13 | 48,687,348 - 48,703,959 (+) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 13 | 48,361,811 - 48,378,978 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 13 | 47,888,957 - 47,906,468 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 13 | 48,835,448 - 48,852,591 (+) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Exoc1l (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024405285 | 28,162,633 - 28,182,209 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936482 | 18,116,452 - 18,133,056 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936482 | 18,116,469 - 18,133,227 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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LOC106504669 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 8 | 55,139,725 - 55,156,575 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 8 | 55,139,783 - 55,156,700 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 8 | 58,404,588 - 58,421,358 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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EXOC1L (Chlorocebus sabaeus - green monkey) |
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miRNA Target Status
Predicted Target Of
Count of predictions: | 75 | Count of miRNA genes: | 57 | Interacting mature miRNAs: | 63 | Transcripts: | ENSRNOT00000072588 | Prediction methods: | Microtar, Miranda, Rnahybrid, Targetscan | Result types: | miRGate_prediction | |