D14Rat64 Marker Search Result - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Marker: D14Rat64

Symbol: D14Rat64
Previously known as: R0052-D04; oxsts6238; 
RGD ID: 37230
Expected Size: 215 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21463,618,971 - 63,619,178 (+)MAPPERmRatBN7.2
Rnor_6.01467,944,692 - 67,944,898NCBIRnor6.0
Rnor_5.01467,969,510 - 67,969,716UniSTSRnor5.0
RGSC_v3.41468,573,959 - 68,574,165UniSTSRGSC3.4
RGSC_v3.41468,573,958 - 68,574,165RGDRGSC3.4
RGSC_v3.11468,576,350 - 68,576,556RGD
Celera1462,645,114 - 62,645,320UniSTS
RH 3.4 Map14468.2RGD
RH 3.4 Map14468.2UniSTS
RH 2.0 Map14599.3RGD
SHRSP x BN Map1430.53RGD
FHH x ACI Map1445.9899RGD
Cytogenetic Map14q11UniSTS
Is Marker For: Strains:   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   DA.E3-(D14Wox8-D14Rat64)/Rhd   SS/Jr   COP/OlaHsd  
QTLs:   Pia13  
Genes:   Aldh9a1-ps1  


Annotation


References - curated
# Reference Title Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8

Strains and Sequence

Sequence
 
Forward Primer ATTCCTTCATGGTCTGCCAG
Reverse Primer AAATTCTTTGGTAATGCTCTGGA
 
Template 
ATTTTTTTTTTTTTTNTTTTNNTTTNTTTTTTNTTTTTTTTTTTTNTTTNTTTTTTTTTTTTTT
NTTTTTNNTTTTTCCACTTTTTTTNTTTCNNCTTCATGCTGAGGTCGATCTAGAGGACCCCATG
TAAATTCTTTGGTAATGCTCTGGATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
CGTGCGTGCGTGCGTGTGTGTGTGTGTGTGTGTTTATCCTCAAGGAAGCCAGACCACTGTGAAT
AGATAATAGTAGAGTCTAGAAATGATTGTGTGTCCTTTAGCACCTCAGCACATAGAATGACAGC
GTCCCTGGCAGACCATGAAGGAATCTGATGCTTGGTTCAATTAAACATACTCCCTCTGAGCTCT
GCTTAGAAGTCAATGTTAAGGCCTGTCTTGTTTCCTTGAAGAGATGGGGAGATACATTTCAATT
CAGCACATTCCCTTAATCAAAACACATTTGTGTGGGTTACCGAGCTCGAATTCGTAATCATGGT
CATAGCTGTTTCCTGTGTGAAATTGTTTATCCGCTCACAATTTCCACACAACATACGAGCCGGA
AGCATAAAGTTGTAAAGCCTGGGGTTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCG
CTCACTGCTCGCTTTTCCAGTCGGGAAANCTGTCGTTGCCAGCTGCATTAAATGTAATCGGNCA
ACGCGCGGGGAGATGCNGTTTTGCGTATTTGGGGCGNCAGGGTTTGGNTTTTTTCTTTTTCNNC
AGTGAGACGGGGNAACAAGCTTGATTGNNCTTTCANCGNCTGGCCTTNANAGTATTTTTNNNAG
CGGTTCAAGCTGGGTTTNCCCCATAGGCNNAAATTCCTTGTTTNAATGGTGGTNC

Region

Nucleotide Sequences


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat
2300197Scl59Serum cholesterol level QTL 59blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)1455147478100147478Rat
9590294Uminl4Urine mineral level QTL 45.660.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)1455624247100624247Rat
9589034Epfw11Epididymal fat weight QTL 1160.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)1455624247100624247Rat
2317879Alcrsp27Alcohol response QTL 273.30.63response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)1456631369101631369Rat
634328Hc5Hypercalciuria QTL 52.3urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)1458184885103184885Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene 369092 UniSTS
  498384 UniSTS
UniSTS 118395 UniSTS