Tmprss11d (transmembrane serine protease 11D) - Rat Genome Database

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Gene: Tmprss11d (transmembrane serine protease 11D) Rattus norvegicus
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Symbol: Tmprss11d
Name: transmembrane serine protease 11D
RGD ID: 620654
Description: Enables serine-type peptidase activity. Involved in regulation of growth. Located in cell surface. Orthologous to human TMPRSS11D (transmembrane serine protease 11D); INTERACTS WITH acrylamide; ammonium chloride; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: adrenal secretory serine protease; adrenal secretory serine protease precursor; AF198087; airway trypsin-like protease; Asp; AT; transmembrane protease serine 11D; transmembrane protease, serine 11d
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81422,062,129 - 22,124,189 (+)NCBIGRCr8
mRatBN7.21421,707,336 - 21,769,398 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1421,707,336 - 21,769,396 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1422,059,965 - 22,119,374 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01423,378,886 - 23,438,289 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01421,909,971 - 21,969,391 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01423,330,933 - 23,392,993 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1423,330,933 - 23,392,991 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01423,218,327 - 23,289,174 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41423,474,013 - 23,536,005 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11423,520,345 - 23,536,005 (+)NCBI
Celera1421,179,225 - 21,240,035 (+)NCBICelera
Cytogenetic Map14p21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Identification of a serine protease involved with the regulation of adrenal growth. Bicknell AB Ann N Y Acad Sci 2003 Jun;994:118-22.
2. Characterization of a serine protease that cleaves pro-gamma-melanotropin at the adrenal to stimulate growth. Bicknell AB, etal., Cell 2001 Jun 29;105(7):903-12.
3. The adrenal secretory serine protease AsP is a short secretory isoform of the transmembrane airway trypsin-like protease. Hansen IA, etal., Endocrinology 2004 Apr;145(4):1898-905. Epub 2003 Dec 22.
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19056867   PMID:23376485   PMID:24227843  


Genomics

Comparative Map Data
Tmprss11d
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81422,062,129 - 22,124,189 (+)NCBIGRCr8
mRatBN7.21421,707,336 - 21,769,398 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1421,707,336 - 21,769,396 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1422,059,965 - 22,119,374 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01423,378,886 - 23,438,289 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01421,909,971 - 21,969,391 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01423,330,933 - 23,392,993 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1423,330,933 - 23,392,991 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01423,218,327 - 23,289,174 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41423,474,013 - 23,536,005 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11423,520,345 - 23,536,005 (+)NCBI
Celera1421,179,225 - 21,240,035 (+)NCBICelera
Cytogenetic Map14p21NCBI
TMPRSS11D
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38467,820,876 - 67,884,002 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl467,820,876 - 67,884,002 (-)EnsemblGRCh38hg38GRCh38
GRCh37468,686,594 - 68,749,720 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36468,369,189 - 68,432,311 (-)NCBINCBI36Build 36hg18NCBI36
Celera466,148,993 - 66,212,123 (-)NCBICelera
Cytogenetic Map4q13.2NCBI
HuRef464,599,718 - 64,662,811 (-)NCBIHuRef
CHM1_1468,723,715 - 68,786,788 (-)NCBICHM1_1
T2T-CHM13v2.0471,264,020 - 71,327,118 (-)NCBIT2T-CHM13v2.0
Tmprss11d
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39586,450,713 - 86,521,246 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl586,450,076 - 86,521,279 (-)EnsemblGRCm39 Ensembl
GRCm38586,302,854 - 86,373,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl586,302,217 - 86,373,420 (-)EnsemblGRCm38mm10GRCm38
MGSCv37586,731,879 - 86,802,412 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36587,377,415 - 87,447,948 (-)NCBIMGSCv36mm8
Celera583,534,942 - 83,599,327 (-)NCBICelera
Cytogenetic Map5E1NCBI
cM Map543.56NCBI
TMPRSS11D
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2362,009,950 - 62,073,071 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1462,219,965 - 62,283,079 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0456,164,300 - 56,227,415 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1462,558,360 - 62,621,487 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl462,558,360 - 62,621,480 (+)Ensemblpanpan1.1panPan2
TMPRSS11D
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11358,354,360 - 58,406,229 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1358,355,829 - 58,406,622 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1358,277,247 - 58,327,644 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01359,051,487 - 59,101,776 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11358,698,856 - 58,748,989 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01358,189,239 - 58,239,572 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01359,199,720 - 59,249,904 (-)NCBIUU_Cfam_GSD_1.0
LOC100512911
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl865,570,946 - 65,623,801 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1865,570,433 - 65,623,785 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2869,994,402 - 70,046,430 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMPRSS11D
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.171,076,592 - 1,146,080 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl71,106,307 - 1,145,673 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660661,170,690 - 1,233,491 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmprss11d
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624761981,825 - 1,103,779 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tmprss11d
319 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:77
Interacting mature miRNAs:81
Transcripts:ENSRNOT00000002748
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
619619Rf4Renal disease susceptibility QTL 44.10.002urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
6 7 23 23 32 27 4 24 4 5 86 63 4 7 29 23

Sequence


Ensembl Acc Id: ENSRNOT00000088552   ⟹   ENSRNOP00000073795
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1421,707,336 - 21,769,396 (+)Ensembl
Rnor_6.0 Ensembl1423,330,933 - 23,392,991 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116172   ⟹   ENSRNOP00000077187
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1421,739,254 - 21,769,396 (+)Ensembl
RefSeq Acc Id: NM_001033652   ⟹   NP_001028824
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81422,062,129 - 22,124,189 (+)NCBI
mRatBN7.21421,707,336 - 21,769,398 (+)NCBI
Rnor_6.01423,330,933 - 23,392,993 (+)NCBI
Rnor_5.01423,218,327 - 23,289,174 (+)NCBI
RGSC_v3.41423,474,013 - 23,536,005 (+)RGD
Celera1421,179,225 - 21,240,035 (+)RGD
Sequence:
RefSeq Acc Id: NM_022630   ⟹   NP_072152
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81422,108,529 - 22,124,189 (+)NCBI
mRatBN7.21421,753,738 - 21,769,398 (+)NCBI
Rnor_6.01423,377,333 - 23,392,993 (+)NCBI
Rnor_5.01423,218,327 - 23,289,174 (+)NCBI
RGSC_v3.41423,474,013 - 23,536,005 (+)RGD
Celera1421,224,369 - 21,240,035 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001028824 (Get FASTA)   NCBI Sequence Viewer  
  NP_072152 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAF13253 (Get FASTA)   NCBI Sequence Viewer  
  AAL50817 (Get FASTA)   NCBI Sequence Viewer  
  EDL89835 (Get FASTA)   NCBI Sequence Viewer  
  EDL89836 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000073795.1
  ENSRNOP00000077187.1
GenBank Protein Q8VHJ4 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001028824   ⟸   NM_001033652
- Peptide Label: isoform a
- UniProtKB: Q9QZ74 (UniProtKB/Swiss-Prot),   Q8VHJ4 (UniProtKB/Swiss-Prot),   G3V691 (UniProtKB/TrEMBL),   A6JCR3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_072152   ⟸   NM_022630
- Peptide Label: isoform b precursor
- UniProtKB: A6JCR4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073795   ⟸   ENSRNOT00000088552
Ensembl Acc Id: ENSRNOP00000077187   ⟸   ENSRNOT00000116172
Protein Domains
Peptidase S1   SEA

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8VHJ4-F1-model_v2 AlphaFold Q8VHJ4 1-417 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:620654 AgrOrtholog
BioCyc Gene G2FUF-16071 BioCyc
Ensembl Genes ENSRNOG00000055991 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000088552.2 UniProtKB/TrEMBL
  ENSRNOT00000116172.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.960 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Pept_S1A_HAT/DESC1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_S1_PA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_S1A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEA_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SEA_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64565 UniProtKB/Swiss-Prot
NCBI Gene 64565 ENTREZGENE
PANTHER ACROSIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSMEMBRANE SERINE PROTEASE 12 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam SEA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Trypsin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tmprss11d PhenoGen
PIRSF TMPRSS11ABCDE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS CHYMOTRYPSIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SEA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_DOM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_HIS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRYPSIN_SER UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000055991 RatGTEx
SMART Tryp_SPc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50494 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF82671 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8I5YC90_RAT UniProtKB/TrEMBL
  A6JCR3 ENTREZGENE, UniProtKB/TrEMBL
  A6JCR4 ENTREZGENE, UniProtKB/TrEMBL
  G3V691 ENTREZGENE, UniProtKB/TrEMBL
  Q8VHJ4 ENTREZGENE
  Q9QZ74 ENTREZGENE
  TM11D_RAT UniProtKB/Swiss-Prot
UniProt Secondary Q9QZ74 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-01-26 Tmprss11d  transmembrane serine protease 11D  Tmprss11d  transmembrane protease, serine 11d  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-30 Tmprss11d  transmembrane protease, serine 11d  AF198087  adrenal secretory serine protease precursor  Symbol and Name updated 1299863 APPROVED
2002-08-07 AF198087  adrenal secretory serine protease precursor      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_expression increased expression occurs during growth of the adrenal cortex 631871
gene_protein precursor encodes two isoforms, adrenal secretory serine protease AsP and a transmembrane airway trypsin-like protease 1304278