Gabra2 (gamma-aminobutyric acid type A receptor subunit alpha 2) - Rat Genome Database

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Gene: Gabra2 (gamma-aminobutyric acid type A receptor subunit alpha 2) Rattus norvegicus
Analyze
Symbol: Gabra2
Name: gamma-aminobutyric acid type A receptor subunit alpha 2
RGD ID: 61856
Description: Predicted to enable extracellular ligand-gated ion channel activity. Predicted to contribute to GABA-A receptor activity; benzodiazepine receptor activity; and chloride channel activity. Predicted to be involved in several processes, including GABAergic synaptic transmission; chloride transmembrane transport; and inhibitory synapse assembly. Located in dendrite membrane. Is active in GABA-ergic synapse. Human ortholog(s) of this gene implicated in alcohol use disorder; autistic disorder; and developmental and epileptic encephalopathy 78. Orthologous to human GABRA2 (gamma-aminobutyric acid type A receptor subunit alpha2); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; Alphaxolone; amitriptyline.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: GABA(A) receptor subunit alpha-2; gamma-aminobutyric acid (GABA) A receptor, alpha 2; gamma-aminobutyric acid (GABA-A) receptor subunit alpha 2; gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 2; gamma-aminobutyric acid A receptor, alpha 2; gamma-aminobutyric acid receptor A2 subunit; gamma-aminobutyric acid receptor subunit alpha-2; gamma-aminobutyric acid type A receptor alpha2 subunit; similar to Gamma-aminobutyric-acid receptor alpha-2 subunit precursor (GABA(A) receptor)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21437,096,995 - 37,230,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1437,097,279 - 37,228,944 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1437,456,948 - 37,589,716 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01438,761,706 - 38,894,495 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01437,242,647 - 37,375,425 (+)NCBIRnor_WKY
Rnor_6.01439,662,411 - 39,801,082 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1439,661,968 - 39,798,302 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01439,473,078 - 39,610,209 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41439,568,677 - 39,705,897 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11439,574,531 - 39,707,830 (+)NCBI
Celera1436,313,034 - 36,444,629 (+)NCBICelera
Cytogenetic Map14p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. Variations in GABRA2, encoding the alpha 2 subunit of the GABA(A) receptor, are associated with alcohol dependence and with brain oscillations. Edenberg HJ, etal., Am J Hum Genet. 2004 Apr;74(4):705-14. Epub 2004 Mar 12.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Neurexins induce differentiation of GABA and glutamate postsynaptic specializations via neuroligins. Graf ER, etal., Cell. 2004 Dec 29;119(7):1013-26.
5. Quantitative localisation of synaptic and extrasynaptic GABAA receptor subunits on hippocampal pyramidal cells by freeze-fracture replica immunolabelling. Kasugai Y, etal., Eur J Neurosci. 2010 Dec;32(11):1868-88. doi: 10.1111/j.1460-9568.2010.07473.x. Epub 2010 Nov 14.
6. Identification of significant association and gene-gene interaction of GABA receptor subunit genes in autism. Ma DQ, etal., Am J Hum Genet. 2005 Sep;77(3):377-88. Epub 2005 Jul 15.
7. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
8. Differential synaptic localization of two major gamma-aminobutyric acid type A receptor alpha subunits on hippocampal pyramidal cells. Nusser Z, etal., Proc Natl Acad Sci U S A. 1996 Oct 15;93(21):11939-44.
9. Input-dependent synaptic targeting of alpha(2)-subunit-containing GABA(A) receptors in synapses of hippocampal pyramidal cells of the rat. NyĆ­ri G, etal., Eur J Neurosci. 2001 Feb;13(3):428-42. doi: 10.1046/j.1460-9568.2001.01407.x.
10. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
11. GOA pipeline RGD automated data pipeline
12. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
13. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
14. Gamma-aminobutyric acid receptor (GABA(A)) subunits in rat nucleus tractus solitarii (NTS) revealed by polymerase chain reaction (PCR) and immunohistochemistry.PG - 241-57 Saha S, etal., Mol Cell Neurosci 2001 Jan;17(1):241-57.
15. The GABAA receptor family: molecular and functional diversity. Seeburg PH, etal., Cold Spring Harb Symp Quant Biol 1990;55(48):29-40.
Additional References at PubMed
PMID:1312131   PMID:1312132   PMID:1379501   PMID:1849552   PMID:8391122   PMID:9039914   PMID:9682826   PMID:11389177   PMID:12354299   PMID:12763608   PMID:14627650   PMID:14729731  
PMID:17113954   PMID:17483577   PMID:18256255   PMID:18292084   PMID:18360306   PMID:20833253   PMID:21219474   PMID:21368176   PMID:22044189   PMID:22215379   PMID:22666188   PMID:22871113  
PMID:23916758   PMID:23962649   PMID:24554721   PMID:25896802   PMID:26164299   PMID:26469128   PMID:27129275   PMID:32620552  


Genomics

Comparative Map Data
Gabra2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21437,096,995 - 37,230,030 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1437,097,279 - 37,228,944 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1437,456,948 - 37,589,716 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.01438,761,706 - 38,894,495 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.01437,242,647 - 37,375,425 (+)NCBIRnor_WKY
Rnor_6.01439,662,411 - 39,801,082 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1439,661,968 - 39,798,302 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01439,473,078 - 39,610,209 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41439,568,677 - 39,705,897 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11439,574,531 - 39,707,830 (+)NCBI
Celera1436,313,034 - 36,444,629 (+)NCBICelera
Cytogenetic Map14p11NCBI
GABRA2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38446,243,548 - 46,390,300 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl446,243,548 - 46,475,230 (-)EnsemblGRCh38hg38GRCh38
GRCh37446,245,565 - 46,392,317 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36445,946,463 - 46,086,702 (-)NCBINCBI36Build 36hg18NCBI36
Build 34446,092,633 - 46,232,873NCBI
Celera446,700,624 - 46,841,051 (-)NCBICelera
Cytogenetic Map4p12NCBI
HuRef445,569,699 - 45,710,166 (-)NCBIHuRef
CHM1_1446,248,463 - 46,389,517 (-)NCBICHM1_1
T2T-CHM13v2.0446,210,399 - 46,357,479 (-)NCBIT2T-CHM13v2.0
Gabra2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39571,115,735 - 71,253,192 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl571,114,940 - 71,253,192 (-)EnsemblGRCm39 Ensembl
GRCm38570,958,392 - 71,095,849 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl570,957,597 - 71,095,849 (-)EnsemblGRCm38mm10GRCm38
MGSCv37571,352,296 - 71,487,088 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36571,240,192 - 71,374,984 (-)NCBIMGSCv36mm8
Celera568,229,777 - 68,364,499 (-)NCBICelera
Cytogenetic Map5C3.1NCBI
cM Map537.59NCBI
Gabra2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554432,042,151 - 2,179,174 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554432,042,202 - 2,176,589 (+)NCBIChiLan1.0ChiLan1.0
GABRA2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1486,491,841 - 86,641,878 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl486,491,837 - 86,638,166 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0475,762,568 - 75,913,708 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
GABRA2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11342,367,988 - 42,488,069 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1342,368,949 - 42,488,075 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1342,260,942 - 42,439,688 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01342,916,600 - 43,095,420 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1342,973,212 - 43,094,323 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11342,594,633 - 42,773,515 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01342,656,291 - 42,835,136 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01343,007,629 - 43,186,860 (-)NCBIUU_Cfam_GSD_1.0
Gabra2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528533,613,559 - 33,748,243 (+)NCBIHiC_Itri_2
SpeTri2.0NW_00493648212,555,222 - 12,685,122 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GABRA2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl836,347,040 - 36,474,627 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1836,344,633 - 36,474,840 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2838,215,163 - 38,344,937 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GABRA2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1273,858,741 - 4,013,385 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl273,858,910 - 4,006,582 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604749,925,823 - 50,088,704 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gabra2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476120,688,838 - 20,819,568 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476120,688,819 - 20,819,487 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Position Markers
M86567  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21437,228,321 - 37,228,442 (+)MAPPERmRatBN7.2
Rnor_6.01439,798,275 - 39,798,395NCBIRnor6.0
Rnor_5.01439,609,556 - 39,609,676UniSTSRnor5.0
RGSC_v3.41439,705,244 - 39,705,364UniSTSRGSC3.4
Celera1436,443,976 - 36,444,096UniSTS
Cytogenetic Map14p11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
2324617Coatc2Coat color QTL 20.001coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)143076702539153750Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:54
Count of miRNA genes:26
Interacting mature miRNAs:27
Transcripts:ENSRNOT00000003197, ENSRNOT00000064779
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 64
Low 16 10 12 30 3
Below cutoff 3 20 25 10 19 10 8 9 17 9 8 8

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000003197   ⟹   ENSRNOP00000003197
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1437,100,714 - 37,228,944 (+)Ensembl
Rnor_6.0 Ensembl1439,663,421 - 39,798,106 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000064779   ⟹   ENSRNOP00000060621
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1437,097,279 - 37,228,944 (+)Ensembl
Rnor_6.0 Ensembl1439,661,968 - 39,798,302 (+)Ensembl
RefSeq Acc Id: NM_001135779   ⟹   NP_001129251
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21437,097,279 - 37,228,975 (+)NCBI
Rnor_6.01439,662,441 - 39,798,928 (+)NCBI
Rnor_5.01439,473,078 - 39,610,209 (+)NCBI
RGSC_v3.41439,568,677 - 39,705,897 (+)RGD
Celera1436,313,034 - 36,444,629 (+)RGD
Sequence:
RefSeq Acc Id: XM_006250931   ⟹   XP_006250993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21437,096,995 - 37,230,030 (+)NCBI
Rnor_6.01439,662,411 - 39,799,626 (+)NCBI
Rnor_5.01439,473,078 - 39,610,209 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017599106   ⟹   XP_017454595
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21437,097,691 - 37,230,030 (+)NCBI
Rnor_6.01439,662,852 - 39,799,626 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039091712   ⟹   XP_038947640
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21437,097,691 - 37,230,030 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001129251   ⟸   NM_001135779
- Peptide Label: precursor
- UniProtKB: F1LMU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250993   ⟸   XM_006250931
- Peptide Label: isoform X3
- UniProtKB: F1LMU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454595   ⟸   XM_017599106
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000003197   ⟸   ENSRNOT00000003197
RefSeq Acc Id: ENSRNOP00000060621   ⟸   ENSRNOT00000064779
RefSeq Acc Id: XP_038947640   ⟸   XM_039091712
- Peptide Label: isoform X2
Protein Domains
Neur_chan_LBD   Neur_chan_memb

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P23576-F1-model_v2 AlphaFold P23576 1-451 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:61856 AgrOrtholog
BioCyc Gene G2FUF-15832 BioCyc
Ensembl Genes ENSRNOG00000002349 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000003197 ENTREZGENE
  ENSRNOP00000003197.8 UniProtKB/TrEMBL
  ENSRNOP00000060621 ENTREZGENE
  ENSRNOP00000060621.3 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000003197 ENTREZGENE
  ENSRNOT00000003197.8 UniProtKB/TrEMBL
  ENSRNOT00000064779 ENTREZGENE
  ENSRNOT00000064779.5 UniProtKB/TrEMBL
Gene3D-CATH 1.20.58.390 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.70.170.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro GABAA/Glycine_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABAAa_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABBAa2_rcpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_lig-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_lig-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_channel UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuro-gated_channel_TM_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neuro_actylchol_rec UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotrans-gated_channel_TM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neurotransmitter_ion_chnl_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 289606 ENTREZGENE
PANTHER PTHR18945 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR18945:SF218 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Neur_chan_LBD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Neur_chan_memb UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gabra2 PhenoGen
PRINTS GABAARALPHA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABAARALPHA2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GABAARECEPTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NRIONCHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE NEUROTR_ION_CHANNEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF63712 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF90112 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGRFAMs LIC UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt F1LMU7 ENTREZGENE, UniProtKB/TrEMBL
  F1LNE8_RAT UniProtKB/TrEMBL
  GBRA2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-06 Gabra2  gamma-aminobutyric acid type A receptor subunit alpha 2  Gabra2  gamma-aminobutyric acid type A receptor alpha2 subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Gabra2  gamma-aminobutyric acid type A receptor alpha2 subunit  Gabra2  gamma-aminobutyric acid (GABA) A receptor, alpha 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-02-11 Gabra2  gamma-aminobutyric acid type A receptor alpha2 subunit  Gabra2  gamma-aminobutyric acid type A receptor alpha2 subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-03-20 Gabra2  gamma-aminobutyric acid (GABA) A receptor, alpha 2  Gabra2  gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-21 Gabra2  gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 2  LOC289606  similar to Gamma-aminobutyric-acid receptor alpha-2 subunit precursor (GABA(A) receptor)  Data Merged 737654 APPROVED
2008-03-11 Gabra2  gamma-aminobutyric acid (GABA-A) receptor, subunit alpha 2  Gabra2  gamma-aminobutyric acid (GABA) A receptor, alpha 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-18 Gabra2  gamma-aminobutyric acid (GABA) A receptor, alpha 2  Gabra2  gamma-aminobutyric acid A receptor, alpha 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC289606  similar to Gamma-aminobutyric-acid receptor alpha-2 subunit precursor (GABA(A) receptor)      Symbol and Name status set to provisional 70820 PROVISIONAL
2002-06-10 Gabra2  gamma-aminobutyric acid A receptor, alpha 2      Name updated 70584 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_expression mRNA expressed in low amounts in NTS and protein expression is weak in most areas of the medulla except the olivary, lateral reticular, cuneate, vestibular and spinal trigeminal nuclei 625528
gene_process may mediate inhibitory GABA responses in nucleus tractus solitarii (NTS) in the brain 625528