Pcdh7 (protocadherin 7) - Rat Genome Database

Name: Pcdh7
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Pcdh7 (protocadherin 7) Rattus norvegicus

Analyze

Symbol:

Pcdh7

Name:

protocadherin 7

RGD ID:

1303209

Description:

Predicted to have calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to localize to integral component of plasma membrane. Orthologous to human PCDH7 (protocadherin 7); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

protocadherin-7

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PCDH7 (protocadherin 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Pcdh7 (protocadherin 7)	HGNC	Treefam, EggNOG, NCBI, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Pcdh7 (protocadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PCDH7 (protocadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PCDH7 (protocadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pcdh7 (protocadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PCDH7 (protocadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	PCDH7 (protocadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pcdh7 (protocadherin 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PCDH7 (protocadherin 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Pcdh7 (protocadherin 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	pcdh7a (protocadherin 7a)	Alliance	DIOPT (OrthoFinder\|PANTHER\|TreeFam)
Caenorhabditis elegans (roundworm):	cdh-3	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Caenorhabditis elegans (roundworm):	cdh-9	Alliance	DIOPT (Ensembl Compara\|InParanoid)
Drosophila melanogaster (fruit fly):	Cad96Cb	Alliance	DIOPT (Ensembl Compara\|InParanoid)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	14	54,649,054 - 55,081,632 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	55,072,200 - 55,081,551 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	54,783,951 - 55,216,900 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	56,609,036 - 57,323,892 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	14	56,611,426 - 57,326,283 (-)	NCBI
Celera	14	51,655,345 - 52,076,631 (-)	NCBI		Celera
Cytogenetic Map	14	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP,ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

2,4-diaminotoluene (ISO)

2-hydroxypropanoic acid (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

3-methylcholanthrene (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

aflatoxin B2 (ISO)

aflatoxin M1 (ISO)

all-trans-retinoic acid (ISO)

amiodarone (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

calcitriol (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

chloroprene (ISO)

choline (ISO)

cisplatin (ISO)

cocaine (EXP)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (ISO)

cytarabine (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

ethanol (ISO)

ferric oxide (ISO)

folic acid (ISO)

L-methionine (ISO)

lead diacetate (ISO)

leflunomide (ISO)

levonorgestrel (ISO)

maneb (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methotrexate (ISO)

methylisothiazolinone (ISO)

methylmercury chloride (ISO)

N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal (ISO)

N-methyl-N'-nitro-N-nitrosoguanidine (ISO)

nickel atom (ISO)

NS-398 (ISO)

oxaliplatin (EXP)

panobinostat (ISO)

paracetamol (EXP,ISO)

paraquat (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

progesterone (ISO)

rac-lactic acid (ISO)

raloxifene (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sulforaphane (ISO)

tamoxifen (ISO)

testosterone (EXP)

testosterone undecanoate (ISO)

tetrachloromethane (EXP)

titanium dioxide (ISO)

topotecan (EXP)

trichostatin A (ISO)

tunicamycin (ISO)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IBA)

homophilic cell adhesion via plasma membrane adhesion molecules (IEA)

Cellular Component

integral component of plasma membrane (IBA)

plasma membrane (ISO)

Molecular Function

calcium ion binding (IEA)

protein binding (ISO)

References

References - curated


1.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	RGD automated data pipeline
3.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	RGD automated import pipeline for gene-chemical interactions
5.	Yoshida K Cell Mol Biol Lett 2003;8(3):735-41.

Additional References at PubMed

PMID:30361391

Genomics

Comparative Map Data

Pcdh7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	14	54,649,054 - 55,081,632 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	55,072,200 - 55,081,551 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	54,783,951 - 55,216,900 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	56,609,036 - 57,323,892 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	14	56,611,426 - 57,326,283 (-)	NCBI
Celera	14	51,655,345 - 52,076,631 (-)	NCBI		Celera
Cytogenetic Map	14	q11	NCBI

PCDH7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	4	30,720,415 - 31,146,805 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	4	30,719,861 - 31,146,800 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	4	30,721,951 - 31,148,423 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	30,331,135 - 30,757,519 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	4	30,398,305 - 30,821,017	NCBI
Celera	4	31,175,622 - 31,601,081 (+)	NCBI
Cytogenetic Map	4	p15.1	NCBI
HuRef	4	30,065,600 - 30,492,188 (+)	NCBI		HuRef
CHM1_1	4	30,723,442 - 31,149,754 (+)	NCBI		CHM1_1

Pcdh7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	57,873,487 - 58,290,578 (+)	NCBI	GRCm39		mm39
GRCm38	5	57,716,145 - 58,133,236 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	57,717,967 - 58,133,230 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	58,109,260 - 58,523,479 (+)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	58,006,337 - 58,017,692 (+)	NCBI			mm8
Celera	5	55,089,145 - 55,508,003 (+)	NCBI		Celera
Cytogenetic Map	5	C1	NCBI

Pcdh7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	14,769,879 - 15,160,377 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	14,765,994 - 15,160,377 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCDH7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	4	30,365,744 - 30,789,466 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	30,366,855 - 30,370,132 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	4	25,111,142 - 25,535,925 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

PCDH7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1 Ensembl	3	79,976,541 - 80,388,896 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
CanFam3.1	3	79,973,680 - 80,388,896 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1

Pcdh7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
SpeTri2.0	NW_004936482	197,723 - 588,912 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCDH7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	23,459,475 - 23,872,006 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	23,459,475 - 23,872,204 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	24,323,016 - 24,732,096 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCDH7
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	19,204,550 - 19,631,845 (-)	NCBI

Pcdh7
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624755	1,575,466 - 1,985,757 (-)	NCBI

Position Markers

D14Mit8

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	54,942,901 - 54,943,045	NCBI	Rnor6.0
Rnor_5.0	14	55,077,566 - 55,077,710	UniSTS	Rnor5.0
RGSC_v3.4	14	56,484,802 - 56,484,946	UniSTS	RGSC3.4
RGSC_v3.4	14	57,187,009 - 57,187,154	RGD	RGSC3.4
RGSC_v3.4	14	56,484,801 - 56,484,946	RGD	RGSC3.4
RGSC_v3.4	14	57,187,010 - 57,187,154	UniSTS	RGSC3.4
RGSC_v3.1	14	57,189,230 - 57,189,560	RGD
Celera	14	51,941,915 - 51,942,059	UniSTS
Cytogenetic Map	14	q11	UniSTS

D14Got111

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	55,044,723 - 55,044,919	NCBI	Rnor6.0
Rnor_5.0	14	55,179,778 - 55,179,974	UniSTS	Rnor5.0
RGSC_v3.4	14	57,287,037 - 57,287,233	UniSTS	RGSC3.4
Celera	14	52,040,025 - 52,040,221	UniSTS
Cytogenetic Map	14	q11	UniSTS

D14Got110

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	55,044,819 - 55,044,933	NCBI	Rnor6.0
Rnor_5.0	14	55,179,874 - 55,179,988	UniSTS	Rnor5.0
RGSC_v3.4	14	57,287,133 - 57,287,247	UniSTS	RGSC3.4
Celera	14	52,040,121 - 52,040,235	UniSTS
Cytogenetic Map	14	q11	UniSTS

BE102626

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	54,965,318 - 54,965,467	NCBI	Rnor6.0
Rnor_5.0	14	55,100,373 - 55,100,522	UniSTS	Rnor5.0
RGSC_v3.4	14	57,212,040 - 57,212,189	UniSTS	RGSC3.4
Celera	14	51,965,030 - 51,965,179	UniSTS
Cytogenetic Map	14	q11	UniSTS

RH143022

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	55,071,360 - 55,071,524	NCBI	Rnor6.0
Rnor_5.0	14	55,206,634 - 55,206,798	UniSTS	Rnor5.0
RGSC_v3.4	14	57,313,701 - 57,313,865	UniSTS	RGSC3.4
Celera	14	52,066,440 - 52,066,604	UniSTS
Cytogenetic Map	14	q11	UniSTS

BE121006

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	54,713,963 - 54,714,122	NCBI	Rnor6.0
Rnor_6.0	X	135,564,508 - 135,564,667	NCBI	Rnor6.0
Rnor_5.0	14	54,848,626 - 54,848,785	UniSTS	Rnor5.0
Rnor_5.0	X	135,634,659 - 135,634,818	UniSTS	Rnor5.0
RGSC_v3.4	14	56,669,488 - 56,669,647	UniSTS	RGSC3.4
RGSC_v3.4	X	135,127,481 - 135,127,640	UniSTS	RGSC3.4
Celera	X	126,849,765 - 126,849,924	UniSTS
Celera	14	51,715,893 - 51,716,052	UniSTS
Cytogenetic Map	14	q11	UniSTS

PCDH7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	14	55,082,149 - 55,082,342	NCBI	Rnor6.0
Rnor_5.0	14	55,217,423 - 55,217,616	UniSTS	Rnor5.0
RGSC_v3.4	14	57,324,490 - 57,324,683	UniSTS	RGSC3.4
Celera	14	52,077,229 - 52,077,422	UniSTS
Cytogenetic Map	14	q11	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	9756435	72854397	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	10539977	55539977	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	10539977	55539977	Rat
731183	Pia20	Pristane induced arthritis QTL 20	3.55		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	10729268	61873323	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	12680424	106641756	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	20189386	65189386	Rat
10755459	Coatc15	Coat color QTL 15		0.01681	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	14	21457565	66457565	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	32593926	86191589	Rat
2324617	Coatc2	Coat color QTL 2		0.001	coat/hair pigmentation trait (VT:0010463)	pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)	14	33039912	61783215	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	33163316	73391571	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	40315610	85315610	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	40315610	85315610	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	40315610	85315610	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	40315610	85315610	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	41637569	80841518	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	42442731	108833671	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	43910761	105074364	Rat
1549834	Scl45	Serum cholesterol level QTL 45	5.8		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	14	51818462	105074364	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	42
Count of miRNA genes:	34
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000049245
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium		41	4	4		4			56	16	22	6
Low	3	2	51	35	19	35	8	9	18	19	17	5	8
Below cutoff			2	2		2		2			2

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001004087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251017	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251022	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006251023	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770189	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599291	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599292	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017599293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AABR07015413	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07015414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AABR07015415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079929	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079933	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079934	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079935	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079936	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079937	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AAHX01079940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY690613	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY690614	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY690615	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY690616	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473963	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ226048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000049245 ⟹ ENSRNOP00000045705

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	14	55,072,200 - 55,081,551 (-)	Ensembl

RefSeq Acc Id:

NM_001004087 ⟹ NP_001004087

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	54,652,957 - 55,081,551 (-)	NCBI
Rnor_5.0	14	54,783,951 - 55,216,900 (-)	NCBI
RGSC_v3.4	14	56,609,036 - 57,323,892 (-)	RGD
Celera	14	51,655,345 - 52,076,631 (-)	RGD

Sequence:

show sequence

AAGCGAAGATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGGTGCTTGGGCTGTTGTCT
CCTTCTGCCGCTCTGCTTCAGCCTGGCTGCCGCCAAGCAGCTGCTCCGGTACCGGCTGGCTGAG
GAGGGCCCCGCCGACGTGCGGATCGGCAATGTGGCCTCGGACCTGGGCATCGTGACCGGTTCTG
GTGAGGTGACTTTCAGCCTTGAGTCTGGCTCTGAGTATCTGAAGATTGACAACCTCACCGGCGA
GCTGAGCACCAGCGAGCGGCGCATCGACCGAGAGAAGCTGCCCCAATGTCAGATGATCTTCGAC
GAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGATAGGGCCCTCGCAGAGCTGGGTGGACC
TGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACGCCCACCTTCCCGTCGCCGGT
GCTCACGCTCACGGTGGAGGAGAACCGACCTGTAGGCACGCTCTACCTGCTGCCCACGGCCACC
GATCGTGACTTTGGTCGCAACGGCATCGAGCGCTACGAGCTGCTCCAGGAGCCCGGGGGTGGTG
GCGGCGGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCCTACCCAGGGGGCGGCGG
GAACAGCGGGAGCGGCGGCGGCTCTGGGGGATCCAAGCGGCGGCTGGACGCGCCTGAGGGTGGC
GGTGGGACTGGTCCAAGTGGTCGAAGCAGTGTGTTCGAGCTGCAGGTGGCGGACACTCCAGACG
GCGAGAAACAACCGCAGCTGATAGTGAAGGGGGCGCTGGACCGGGAGCAGAGAGATTCCTATGA
ACTGACCCTCCGAGTGCGCGATGGGGGCGACCCACCTCGGTCCTCTCAGGCCATCTTGCGGGTG
CTCATCACCGACGTGAATGACAACAGCCCTCGCTTCGAGAAGAGCGTGTATGAGGCTGATCTGG
CTGAGAACAGCGCTCCCGGCACCCCCATCCTACAGTTGCGCGCCACCGATTTGGACGTAGGGGT
CAATGGACAGATCGAGTATGTATTTGGGGCGGCCACCGAGTCGGTGAGACGGCTACTGCGTCTG
GATGAAACATCGGGCTGGCTCAGTGTCTTACACCGTATCGACCGCGAGGAAGTGAATCAGTTGA
GATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACCGATAAGGCCACCGTGGTCCT
CAATATCAAAGATGAGAACGACAACGTTCCCTCCATCGAAATCCGCAAGATAGGGCGCATTCCG
CTTAAGGACGGGGTGGCCAACGTGGCCGAAGACGTCCTGGTGGACACCCCCATCGCCCTGGTAC
AAGTGTCCGACAGAGACCAAGGCGAGAACGGGGTAGTCACCTGTACTGTGGTGGGAGATGTGCC
TTTTCAGCTTAAGCCAGCCAGCGACACCGAGGGAGATCAGAACAAGAAAAAGTACTTCCTGCAC
ACATCAGCCCCACTGGACTATGAGACCACCCGGGAGTTTAACGTGGTCATAGTAGCTGTGGACT
CCGGCAGTCCCAGCCTCTCCAGCAACAATTCCTTGGTGGTCAAGGTGGGAGACACCAACGACAA
CCCTCCTGTCTTTGGCCAGTCGGTGGTCGAGGTTTACTTTCCAGAAAACAACATTCCCGGGGAG
AGGGTAGCCACGGTGCTGGCGACAGACGCTGACAGCGGGAAGAATGCAGAGATAGCCTACTCGC
TGGACTCTTCAGTGATGGGGACCTTTGCCATCGATCCCGATTCTGGGGACATCCTGGTCAATAC
AGTATTGGACCGGGAGCAGACTGACAGGTATGAGTTTAAAGTTAATGCCAAAGACAAAGGCATT
CCTGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCTGATAAAAATGACAACGACCCTA
AGTTTATGCAGGATGTCTTTACCTTTTATGTGAAGGAAAACTTGCAGCCCAACAGCCCTGTGGG
TATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGAGTCTGTACATAGAGGAG
AACAGTAACATTTTTTCTATTGAGAATGACACAGGGACCATTTACTCCACGATGTCTTTTGACA
GGGAACATCAGACAACATACACTTTCAGAGTGAAGGCAGTGGATGGAGGAGATCCTCCCAGGTC
GGCCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAATGCTCCCACAGTTACCCTT
CCCAGAAATATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAGGACAGTAGTAGCGACAG
TGTTGGCAACAGACAGCGACGATGGCATCAATGCAGACTTGAACTATAGCATTGTGGGAGGGAA
TCCTTTCAAGCTGTTTGAGATTGATTCCACCAGTGGTGTGGTTTCCTTAGTGGGGAAACTCACC
CAAAAGCATTATGGCTTGCACAGGCTGGTTGTGCAAGTGAATGACAGCGGCCAGCCTTCCCAGT
CCACTACGACTTTGGTGCATGTGTTTGTCAATGAAAGTGTTTCCAATGCAACTGTGATTGACTC
TCAGATAGTCCGAAGTCTGCACACCCCACTCACCCAGGATATAGCTGGTGACCCAAGCTATGAA
ATTAGCAAACAGAGACTCAGTATTGTCATTGGGGTGGTGGCTGGCATTATGACTGTGATTCTAA
TCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAGTAAAAATGGCTATGAAGCTGG
CAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAATCTAAGAAGCCTAAAAAG
GACAAGAAAAACAAAAAATCTAAACAGCCACTCTACAGCAGCATCGTCACTGTTGAAGCTTCTA
AACCGAATGGACAGAGGTATGACAGTGTCAATGAGAAGCTGTCAGACAGCCCCAGCATGGGCCG
ATACCGATCTGTTAACGGTGGGCCTGGCAGTCCAGACCTGGCAAGGCATTACAAATCCAGTTCC
CCGCTGCCTACTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAAAAAACATCAAGCTGTAC
AAGATCTACCACCAGCCAACACATTTGTGGGAGCAGGAGACAACATTTCAATTGGATCAGATCA
CTGCTCTGAGTACAGCTGTCAAACCAGTAACAAGTACAGCAAACAGCCGTTTCGTAGAGTGACG
TTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGGGTCACTGCAGAGTTGCTATGACAGCG
GGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAGTTCATCAGGGCCAAGACTGGGTGCCCTTCC
ACTCCCAGAGGACAACTATGAGAGGACCACGCCGGATGGCAGTGTTGATTCAAGGCCTCTTCCG
GATGTAGCGCTGACTGGCAAGTGCACCCGTGAATGTGACGAGTATGGCCATTCAGACTCCTGCT
GGATGCCAGTGCGCACTTCCCCAGAGAGGAAGAAGAGCCAGCCCAAACTCTCCACTTTCATGCC
TGTTGATGAACGAGGAAGCCAGGAAAAGCTGGCCAATGGCGAGGCTGCCATCATGGGTGACCGC
AACAGAAACCTCCTGAACAAAAAGTTGACCTCATCCTATGAGACCTTCAGTGCAGCTAGTTTCA
GCAAAAATGAGGAAGCCAACCCTGAGGATATTCCTTTAACAAAAACAGGGGAATATAAGCCATC
TCCTGTCAACACTCTCACTAGAAGAGAAGTTTATCTGTAGGTT

hide sequence

RefSeq Acc Id:

XM_006251017 ⟹ XP_006251079

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	54,649,054 - 55,081,632 (-)	NCBI
Rnor_5.0	14	54,783,951 - 55,216,900 (-)	NCBI

Sequence:

show sequence

GAGGGGAGGGCAGGCGGCCAGCCCCGGAGGAGGGGGGTGACGAGGGGGGTTGTGGTTAGAAGGA
GCAGTAGCAGCAGCAGCAAGAGAAGATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGG
TGCTTGGGCTGTTGTCTCCTTCTGCCGCTCTGCTTCAGCCTGGCTGCCGCCAAGCAGCTGCTCC
GGTACCGGCTGGCTGAGGAGGGCCCCGCCGACGTGCGGATCGGCAATGTGGCCTCGGACCTGGG
CATCGTGACCGGTTCTGGTGAGGTGACTTTCAGCCTTGAGTCTGGCTCTGAGTATCTGAAGATT
GACAACCTCACCGGCGAGCTGAGCACCAGCGAGCGGCGCATCGACCGAGAGAAGCTGCCCCAAT
GTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGATAGGGCCCTC
GCAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACGCCC
ACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGACCTGTAGGCACGCTCTACC
TGCTGCCCACGGCCACCGATCGTGACTTTGGTCGCAACGGCATCGAGCGCTACGAGCTGCTCCA
GGAGCCCGGGGGTGGTGGCGGCGGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCC
TACCCAGGGGGCGGCGGGAACAGCGGGAGCGGCGGCGGCTCTGGGGGATCCAAGCGGCGGCTGG
ACGCGCCTGAGGGTGGCGGTGGGACTGGTCCAAGTGGTCGAAGCAGTGTGTTCGAGCTGCAGGT
GGCGGACACTCCAGACGGCGAGAAACAACCGCAGCTGATAGTGAAGGGGGCGCTGGACCGGGAG
CAGAGAGATTCCTATGAACTGACCCTCCGAGTGCGCGATGGGGGCGACCCACCTCGGTCCTCTC
AGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACAACAGCCCTCGCTTCGAGAAGAGCGT
GTATGAGGCTGATCTGGCTGAGAACAGCGCTCCCGGCACCCCCATCCTACAGTTGCGCGCCACC
GATTTGGACGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCGGCCACCGAGTCGGTGA
GACGGCTACTGCGTCTGGATGAAACATCGGGCTGGCTCAGTGTCTTACACCGTATCGACCGCGA
GGAAGTGAATCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACCGAT
AAGGCCACCGTGGTCCTCAATATCAAAGATGAGAACGACAACGTTCCCTCCATCGAAATCCGCA
AGATAGGGCGCATTCCGCTTAAGGACGGGGTGGCCAACGTGGCCGAAGACGTCCTGGTGGACAC
CCCCATCGCCCTGGTACAAGTGTCCGACAGAGACCAAGGCGAGAACGGGGTAGTCACCTGTACT
GTGGTGGGAGATGTGCCTTTTCAGCTTAAGCCAGCCAGCGACACCGAGGGAGATCAGAACAAGA
AAAAGTACTTCCTGCACACATCAGCCCCACTGGACTATGAGACCACCCGGGAGTTTAACGTGGT
CATAGTAGCTGTGGACTCCGGCAGTCCCAGCCTCTCCAGCAACAATTCCTTGGTGGTCAAGGTG
GGAGACACCAACGACAACCCTCCTGTCTTTGGCCAGTCGGTGGTCGAGGTTTACTTTCCAGAAA
ACAACATTCCCGGGGAGAGGGTAGCCACGGTGCTGGCGACAGACGCTGACAGCGGGAAGAATGC
AGAGATAGCCTACTCGCTGGACTCTTCAGTGATGGGGACCTTTGCCATCGATCCCGATTCTGGG
GACATCCTGGTCAATACAGTATTGGACCGGGAGCAGACTGACAGGTATGAGTTTAAAGTTAATG
CCAAAGACAAAGGCATTCCTGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCTGATAA
AAATGACAACGACCCTAAGTTTATGCAGGATGTCTTTACCTTTTATGTGAAGGAAAACTTGCAG
CCCAACAGCCCTGTGGGTATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGA
GTCTGTACATAGAGGAGAACAGTAACATTTTTTCTATTGAGAATGACACAGGGACCATTTACTC
CACGATGTCTTTTGACAGGGAACATCAGACAACATACACTTTCAGAGTGAAGGCAGTGGATGGA
GGAGATCCTCCCAGGTCGGCCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAATG
CTCCCACAGTTACCCTTCCCAGAAATATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAG
GACAGTAGTAGCGACAGTGTTGGCAACAGACAGCGACGATGGCATCAATGCAGACTTGAACTAT
AGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGATTGATTCCACCAGTGGTGTGGTTTCCT
TAGTGGGGAAACTCACCCAAAAGCATTATGGCTTGCACAGGCTGGTTGTGCAAGTGAATGACAG
CGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTGTTTGTCAATGAAAGTGTTTCCAAT
GCAACTGTGATTGACTCTCAGATAGTCCGAAGTCTGCACACCCCACTCACCCAGGATATAGCTG
GTGACCCAAGCTATGAAATTAGCAAACAGAGACTCAGTATTGTCATTGGGGTGGTGGCTGGCAT
TATGACTGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAGTAAA
AATGGCTATGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAAT
CTAAGAAGCCTAAAAAGGACAAGAAAAACAAAAAATCTAAACAGCCACTCTACAGCAGCATCGT
CACTGTTGAAGCTTCTAAACCGAATGGACAGAGGTATGACAGTGTCAATGAGAAGCTGTCAGAC
AGCCCCAGCATGGGCCGATACCGATCTGTTAACGGTGGGCCTGGCAGTCCAGACCTGGCAAGGC
ATTACAAATCCAGTTCCCCGCTGCCTACTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAA
AAAACATCAAGCTGTACAAGATCTACCACCAGCCAACACATTTGTGGGAGCAGGAGACAACATT
TCAATTGGATCAGATCACTGCTCTGAGTACAGCTGTCAAACCAGTAACAAGTACAGCAAACAGC
CGTTTCGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGGGTCACTGCA
GAGTTGCTATGACAGCGGGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAGTTCATCAGGGCCA
AGACTGGGTGCCCTTCCACTCCCAGAGGACAACTATGAGAGGACCACGCCGGATGGCAGTGTTG
GTGAGGCAGAGCATATGGAAAATGATTCAAGGCCTCTTCCGGATGTAGCGCTGACTGGCAAGTG
CACCCGTGAATGTGACGAGTATGGCCATTCAGACTCCTGCTGGATGCCAGTGCGCACTTCCCCA
GAGAGGAAGAAGAGCCAGCCCAAACTCTCCACTTTCATGCCTGTTGATGAACGAGGAAGCCAGG
AAAAGCTGGCCAATGGCGAGGCTGCCATCATGGGTGACCGCAACAGAAACCTCCTGAACAAAAA
GTTGACCTCATCCTATGAGACCTTCAGTGCAGCTAGTTTCAGCAAAAATGAGGAAGCCAACCCT
GAGGATATTCCTTTAACAAAAACAGGGGAATATAAGCCATCTCCTGTCAACACTCTCACTAGAA
GAGAAGTTTATCTGTAGGTTGTCAAGGCGCAACAGCAAGTTCTTTTCATGTACGAGGAGAGTTA
GGGGCAAAAACATTACTAAATAAAACCATTTAATCACAAAGAGGGGGCTACCAAAGAGACAAAG
CTTGCCTGCCACTTCCGCCTCCAAATCAGGCCTTTAGTGTTACTGTTTGCCTGACAACAGTGTA
CAAAGTAGAATCCATTCTTGTCACCTGCATGTCTACACCCTTCACTGATCCCCAACACCCACCC
TCTTTCCCCTACCCCTCCTCAAACCCAAATAACAACAACAACAACAACAACAACAAAAGATGGT
TGCAAGTTCTTTTCATGGTAACGAGTCTGATTAGCAGAACATAATACACTCTCATTATCCCTAA
TCTGAAGCATGATTTTGGTCACTTTGATTTGTTTGAGTGTCATCTGGCTTGTTAATAAAAGAAG
AATCGGTAAAAAAAATACTACAGACTATTATTGCTCTATTATTGTTAAAGTTAGCCCATTGGAA
TTGATAAAATCCCTTTAATGGCCCAGTCCTTATATAGAGAACCCTTTGAAAAAGGCATTTAGGA
TGACAACATCTTTAACATTCTAACAAACAAAGTGCGAATTAAAACTCAGTAGAAGAATGCAGTT
CCAAGCTCCCATATGTTGTTAGTTTTGGGTCAAAGGCATCAACTTCTGTCCCATAAATTCACAG
AATATACTCACCCAATCTTGACAAAACATTTACATGAATTATAATTTTTAAAAGTAGGTTTTGG
AATAAAATCTCTCATGAATGAACTTGAACTCTTGTGTCATTATGAGGCCAAAGATCACATGGCA
GATCAGGGAAATAATAAAATCGATTTGGTCCTGACATAGAAAGCCACTAAACAACAGAAGGAAC
TGAACCTGTGCACACTCAGATGCTAGTTGGTCTTATGTCAACTCTTCTTCAAGAAAACTCTTCT
TCTTTATAAAATGAACTTTAGTTACATGCTCAGAAAATGAAAGAACTAATAAGACACATGTGTT
GTCTCATAATAAGCAACTGATCAAAGCCCAGGTCTATTCTCATGTGTTACTGTCAGGGAAGAAT
CTACATTTTAATGCCATATTGATGTATAATGAGATACAAAAAGACATACTGGAGTATGACTTCA
TGAGGTCTCCTATTGTCATTTCAGGATCCCAGCTGTTCTTGGTGATCTTATTATCATTTCTAAT
TATAATTGCATTTTTCACTTGGTCAGAACATAATGATTTCAAATTCTGTGCAACATAGAAACAT
TTTGAGACTCCAACATTTAAACAACATAACACTTTAATTGACTTTCCATTAATGTAATTTGACT
ATTCTTCAATGTGCGTCTTAAACAATCTCTGAACAGGAAAGAATGAGTTCCAGACAATATTTTA
TTTAACACAGTATATGCATCTCAAAGTTGGAAAATGTATAGTTTTTTTTCAAGAGATACAGAAT
ATACAGATTTCGAATGCTTTGCTCTATGCAAGATGATTTAAGAAACCTGAAATTTGAGCTGGGA
CATCCAGAAGAAAGTGACAATCCATGAACAAAATAGGGGACGACAGGTAAAGAGAGCAAACATG
CTCATCAGTGAATGCTACTTACTTGGTTAAACCATAGCCTTGATGGCTTTCTACAAAACCACAG
AAACACTGTAGCTTTGGACAGTTTCATGCTTTGCAGATTTTCTTAGACTATAAGGTGAAGAAAG
CTAGACTATAGGTTGATAACTCATTGTAGGTCATCAAAGTTCTTATCTTTGAGGAACATTTCTC
TGGTGGGACTTTTGGGATCATTTCCTTATGCTCTTTCTTAAAGTGGAATTTTCATTTTGATGTT
AGTTTATGTATAATAGGTAGAAGGAAAAAGATGTAATTAATATAAAAACATTGGACTAAAATAC
CAATAATTGAACATGCTCATGTTTGGTTATTATTTACACTATGGAAAGATGAAGTTCTAGAACC
TTGTTAGGAAACTGCATTCAAGCAGTTCTGCCTTGTATAATCTGTAAGTACCTATTAAGACGAA
ATACTTCTAAAGATACTTATGAAAATGTATACATATTTTTCTTGCACGTTACAAAGGAAATAAT
TGCATAACACTGATGTTCAACACTTTTTATATGCATATTTTCTTTCTTTCATGGGACACTTGAA
GCCACTAGATAGCTCATTTCACCATTAAATTCCTTTGGTTGTCTATAAAGCTAATACAGGTCAC
ACTGGACCTACAGATTCAGTCAAGGCACATTCCATGGTGATGTTTGCACCACATGCCAGGCAGT
CATGTCATTGTCCTTTAACGTGTGAACCTCTCTTTAGAACTAAAATGGATGTGAAAGAATACAA
TTCAGTGTACTGTAAGTATTCGAAGTAATTCTAGTAGAATTAGTTATCATAACATGTTTATTAT
ATAATGAGCTGGCATGACATACAAATATATTTTGTGTTTGTATGACTTTTATTTTGACTAGGTT
AAATCTGGTGCCACTCCATATATAGAGTGCTTTTGAAAAAAAAATAAAATCAAAAAAAATAAAT
AAATGAGTGAATGCAAAATAAGCAACTGTGCCTTTTATACCTCTTGTTATGGTAAACAAACAAG
CAAACAACAAACAAACAAACGAATGGTTGTTGGGTTTGAATAATGAGGGGAAATGGGCTACTCC
CAACTTTTTTGATCCTGTATATTTATCCTTGTTTATTTTCTGAGAATAAATAATATATTAAAAC
TTTGCCTTCTGACAAACTCAGATAAAGGACCAGTCTTGAATATTGTTCATTCATAAGACAAGAT
TCAGGCATTAATATGGGGCTGCTTAAATCTCACTGGACAATGAAATCATTGGTTACAGAATCAC
ACAGGGAAATACTATCAGGGGTGAAATCAGTCCATTCTTGCAAGGTAGAATATTGATTTAGAAG
TTTTGATTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTAGAT
GGTCTTTCATTTTTGGTTGTACAGTATATAAACTCTCTTTGTTTTCTGTACACAGACTCTCAAG
TGGACTTCTGCATGGTAATACATTAGGACACATTTACAAATTGAGTAACTATACAAATGTATGT
GTATTTAAATGTCTGTAGCATCTGTCTAAAATTGACTGCTCTGTTTTGAATCTAGAGAGAGCAT
TGTTGTCTGATTTTCTTTCTTTTTCTTTTTATTTTTTTTTAAACTGGCCTGTTGCCTGAGTTTC
AGAAAACGGAGAAGGCATTATTTTTATGAGAGAAGGAACTAAGGTGGTACAGAGGATGTTTGCC
TGAAAGGCTACCCTGGGAGGCTAGGTTAGAGCAAAAATACAAAAGGAAATACACAGGCCAGAAA
GAAACTGCCAGGAATCAAACAGCCATCTTAAAACAGTTGTGTGAAATCTTAAGACCTATGTCAT
TTCATATAATAGGTTATAGCAGAAGTAAATACATAGTATCTCCTTAAAATAGTAAATTAAAGGA
GCAAAGTTCATCAGGGATATGATAAGCTTGGTAATTGTGACCCAGGCGTGGTGTGTGTGACATC
TGGATGCGGCATCATTCGTTCAGCTACCTAGGGTTTACTTTCAGACAACTTTTCCTACATTTTA
AAGCACTTGCATTCCGTGTGGTACGATCTGTTTGTAATGTTAATCATTGACTATTGTTCTGCTA
CTTGGATGTTGATAGTGAAGCAGAGAACAATTAATCATCATTGATTATGTCACTATGCACGCGA
CTTTGCTAAACATGGAGAAATGTATTAAACACTCGTCCAACTATTTATGAGATACTTTACATAA
TTTAATTTGCTTTTGTACAGTTTTATGTAAATAAATTGCTTGTCATTTTTGTCTTTACAAAATT
AAAATATAACATGATCAAA

hide sequence

RefSeq Acc Id:

XM_006251022 ⟹ XP_006251084

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	55,016,737 - 55,081,632 (-)	NCBI
Rnor_5.0	14	54,783,951 - 55,216,900 (-)	NCBI

Sequence:

show sequence

GAGGGGAGGGCAGGCGGCCAGCCCCGGAGGAGGGGGGTGACGAGGGGGGTTGTGGTTAGAAGGA
GCAGTAGCAGCAGCAGCAAGAGAAGATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGG
TGCTTGGGCTGTTGTCTCCTTCTGCCGCTCTGCTTCAGCCTGGCTGCCGCCAAGCAGCTGCTCC
GGTACCGGCTGGCTGAGGAGGGCCCCGCCGACGTGCGGATCGGCAATGTGGCCTCGGACCTGGG
CATCGTGACCGGTTCTGGTGAGGTGACTTTCAGCCTTGAGTCTGGCTCTGAGTATCTGAAGATT
GACAACCTCACCGGCGAGCTGAGCACCAGCGAGCGGCGCATCGACCGAGAGAAGCTGCCCCAAT
GTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGATAGGGCCCTC
GCAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACGCCC
ACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGACCTGTAGGCACGCTCTACC
TGCTGCCCACGGCCACCGATCGTGACTTTGGTCGCAACGGCATCGAGCGCTACGAGCTGCTCCA
GGAGCCCGGGGGTGGTGGCGGCGGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCC
TACCCAGGGGGCGGCGGGAACAGCGGGAGCGGCGGCGGCTCTGGGGGATCCAAGCGGCGGCTGG
ACGCGCCTGAGGGTGGCGGTGGGACTGGTCCAAGTGGTCGAAGCAGTGTGTTCGAGCTGCAGGT
GGCGGACACTCCAGACGGCGAGAAACAACCGCAGCTGATAGTGAAGGGGGCGCTGGACCGGGAG
CAGAGAGATTCCTATGAACTGACCCTCCGAGTGCGCGATGGGGGCGACCCACCTCGGTCCTCTC
AGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACAACAGCCCTCGCTTCGAGAAGAGCGT
GTATGAGGCTGATCTGGCTGAGAACAGCGCTCCCGGCACCCCCATCCTACAGTTGCGCGCCACC
GATTTGGACGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCGGCCACCGAGTCGGTGA
GACGGCTACTGCGTCTGGATGAAACATCGGGCTGGCTCAGTGTCTTACACCGTATCGACCGCGA
GGAAGTGAATCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACCGAT
AAGGCCACCGTGGTCCTCAATATCAAAGATGAGAACGACAACGTTCCCTCCATCGAAATCCGCA
AGATAGGGCGCATTCCGCTTAAGGACGGGGTGGCCAACGTGGCCGAAGACGTCCTGGTGGACAC
CCCCATCGCCCTGGTACAAGTGTCCGACAGAGACCAAGGCGAGAACGGGGTAGTCACCTGTACT
GTGGTGGGAGATGTGCCTTTTCAGCTTAAGCCAGCCAGCGACACCGAGGGAGATCAGAACAAGA
AAAAGTACTTCCTGCACACATCAGCCCCACTGGACTATGAGACCACCCGGGAGTTTAACGTGGT
CATAGTAGCTGTGGACTCCGGCAGTCCCAGCCTCTCCAGCAACAATTCCTTGGTGGTCAAGGTG
GGAGACACCAACGACAACCCTCCTGTCTTTGGCCAGTCGGTGGTCGAGGTTTACTTTCCAGAAA
ACAACATTCCCGGGGAGAGGGTAGCCACGGTGCTGGCGACAGACGCTGACAGCGGGAAGAATGC
AGAGATAGCCTACTCGCTGGACTCTTCAGTGATGGGGACCTTTGCCATCGATCCCGATTCTGGG
GACATCCTGGTCAATACAGTATTGGACCGGGAGCAGACTGACAGGTATGAGTTTAAAGTTAATG
CCAAAGACAAAGGCATTCCTGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCTGATAA
AAATGACAACGACCCTAAGTTTATGCAGGATGTCTTTACCTTTTATGTGAAGGAAAACTTGCAG
CCCAACAGCCCTGTGGGTATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGA
GTCTGTACATAGAGGAGAACAGTAACATTTTTTCTATTGAGAATGACACAGGGACCATTTACTC
CACGATGTCTTTTGACAGGGAACATCAGACAACATACACTTTCAGAGTGAAGGCAGTGGATGGA
GGAGATCCTCCCAGGTCGGCCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAATG
CTCCCACAGTTACCCTTCCCAGAAATATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAG
GACAGTAGTAGCGACAGTGTTGGCAACAGACAGCGACGATGGCATCAATGCAGACTTGAACTAT
AGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGATTGATTCCACCAGTGGTGTGGTTTCCT
TAGTGGGGAAACTCACCCAAAAGCATTATGGCTTGCACAGGCTGGTTGTGCAAGTGAATGACAG
CGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTGTTTGTCAATGAAAGTGTTTCCAAT
GCAACTGTGATTGACTCTCAGATAGTCCGAAGTCTGCACACCCCACTCACCCAGGATATAGCTG
GTGACCCAAGCTATGAAATTAGCAAACAGAGACTCAGTATTGTCATTGGGGTGGTGGCTGGCAT
TATGACTGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAGTAAA
AATGGCTATGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAAT
CTAAGAAGCCTAAAAAGGACAAGAAAAACAAAAAATCTAAACAGCCACTCTACAGCAGCATCGT
CACTGTTGAAGCTTCTAAACCGAATGGACAGAGGTATGACAGTGTCAATGAGAAGCTGTCAGAC
AGCCCCAGCATGGGCCGATACCGATCTGTTAACGGTGGGCCTGGCAGTCCAGACCTGGCAAGGC
ATTACAAATCCAGTTCCCCGCTGCCTACTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAA
AAAACATCAAGCTGTACAAGATCTACCACCAGCCAACACATTTGTGGGAGCAGGAGACAACATT
TCAATTGGATCAGATCACTGCTCTGAGTACAGCTGTCAAACCAGTAACAAGTACAGCAAACAGG
TGGATACAGTGCAGACCACGAACCCACCTGGCCACATTGAGGAATCGTGTAAAATCAATGTATG
TGCTCGTAAGTGAAATACATGCCAAGTTCCAACTCAATATGTTGGATCCTAATAGACCCGGATT
TGTCTTGCGTAGAAAGAAATTGATTCCCAGAGGGCGAGATCACTAGCTCATTAAAGTGAAGCCC
CAGTTTTGAAGAACACACACACACACACACACACACACACACACACACACACACACACA

hide sequence

RefSeq Acc Id:

XM_006251023 ⟹ XP_006251085

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	55,071,907 - 55,081,632 (-)	NCBI
Rnor_5.0	14	54,783,951 - 55,216,900 (-)	NCBI

Sequence:

show sequence

GAGGGGAGGGCAGGCGGCCAGCCCCGGAGGAGGGGGGTGACGAGGGGGGTTGTGGTTAGAAGGA
GCAGTAGCAGCAGCAGCAAGAGAAGATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGG
TGCTTGGGCTGTTGTCTCCTTCTGCCGCTCTGCTTCAGCCTGGCTGCCGCCAAGCAGCTGCTCC
GGTACCGGCTGGCTGAGGAGGGCCCCGCCGACGTGCGGATCGGCAATGTGGCCTCGGACCTGGG
CATCGTGACCGGTTCTGGTGAGGTGACTTTCAGCCTTGAGTCTGGCTCTGAGTATCTGAAGATT
GACAACCTCACCGGCGAGCTGAGCACCAGCGAGCGGCGCATCGACCGAGAGAAGCTGCCCCAAT
GTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGATAGGGCCCTC
GCAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACGCCC
ACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGACCTGTAGGCACGCTCTACC
TGCTGCCCACGGCCACCGATCGTGACTTTGGTCGCAACGGCATCGAGCGCTACGAGCTGCTCCA
GGAGCCCGGGGGTGGTGGCGGCGGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCC
TACCCAGGGGGCGGCGGGAACAGCGGGAGCGGCGGCGGCTCTGGGGGATCCAAGCGGCGGCTGG
ACGCGCCTGAGGGTGGCGGTGGGACTGGTCCAAGTGGTCGAAGCAGTGTGTTCGAGCTGCAGGT
GGCGGACACTCCAGACGGCGAGAAACAACCGCAGCTGATAGTGAAGGGGGCGCTGGACCGGGAG
CAGAGAGATTCCTATGAACTGACCCTCCGAGTGCGCGATGGGGGCGACCCACCTCGGTCCTCTC
AGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACAACAGCCCTCGCTTCGAGAAGAGCGT
GTATGAGGCTGATCTGGCTGAGAACAGCGCTCCCGGCACCCCCATCCTACAGTTGCGCGCCACC
GATTTGGACGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCGGCCACCGAGTCGGTGA
GACGGCTACTGCGTCTGGATGAAACATCGGGCTGGCTCAGTGTCTTACACCGTATCGACCGCGA
GGAAGTGAATCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACCGAT
AAGGCCACCGTGGTCCTCAATATCAAAGATGAGAACGACAACGTTCCCTCCATCGAAATCCGCA
AGATAGGGCGCATTCCGCTTAAGGACGGGGTGGCCAACGTGGCCGAAGACGTCCTGGTGGACAC
CCCCATCGCCCTGGTACAAGTGTCCGACAGAGACCAAGGCGAGAACGGGGTAGTCACCTGTACT
GTGGTGGGAGATGTGCCTTTTCAGCTTAAGCCAGCCAGCGACACCGAGGGAGATCAGAACAAGA
AAAAGTACTTCCTGCACACATCAGCCCCACTGGACTATGAGACCACCCGGGAGTTTAACGTGGT
CATAGTAGCTGTGGACTCCGGCAGTCCCAGCCTCTCCAGCAACAATTCCTTGGTGGTCAAGGTG
GGAGACACCAACGACAACCCTCCTGTCTTTGGCCAGTCGGTGGTCGAGGTTTACTTTCCAGAAA
ACAACATTCCCGGGGAGAGGGTAGCCACGGTGCTGGCGACAGACGCTGACAGCGGGAAGAATGC
AGAGATAGCCTACTCGCTGGACTCTTCAGTGATGGGGACCTTTGCCATCGATCCCGATTCTGGG
GACATCCTGGTCAATACAGTATTGGACCGGGAGCAGACTGACAGGTATGAGTTTAAAGTTAATG
CCAAAGACAAAGGCATTCCTGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCTGATAA
AAATGACAACGACCCTAAGTTTATGCAGGATGTCTTTACCTTTTATGTGAAGGAAAACTTGCAG
CCCAACAGCCCTGTGGGTATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGA
GTCTGTACATAGAGGAGAACAGTAACATTTTTTCTATTGAGAATGACACAGGGACCATTTACTC
CACGATGTCTTTTGACAGGGAACATCAGACAACATACACTTTCAGAGTGAAGGCAGTGGATGGA
GGAGATCCTCCCAGGTCGGCCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAATG
CTCCCACAGTTACCCTTCCCAGAAATATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAG
GACAGTAGTAGCGACAGTGTTGGCAACAGACAGCGACGATGGCATCAATGCAGACTTGAACTAT
AGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGATTGATTCCACCAGTGGTGTGGTTTCCT
TAGTGGGGAAACTCACCCAAAAGCATTATGGCTTGCACAGGCTGGTTGTGCAAGTGAATGACAG
CGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTGTTTGTCAATGAAAGTGTTTCCAAT
GCAACTGTGATTGACTCTCAGATAGTCCGAAGTCTGCACACCCCACTCACCCAGGATATAGCTG
GTGACCCAAGCTATGAAATTAGCAAACAGAGACTCAGTATTGTCATTGGGGTGGTGGCTGGCAT
TATGACTGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAGTAAA
AATGGCTATGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAAT
CTAAGAAGCCTAAAAAGGACAAGAAAAACAAAAAATCTAAACAGCCACTCTACAGCAGCATCGT
CACTGTTGAAGCTTCTAAACCGAATGGACAGAGGTATGACAGTGTCAATGAGAAGCTGTCAGAC
AGCCCCAGCATGGGCCGATACCGATCTGTTAACGGTGGGCCTGGCAGTCCAGACCTGGCAAGGC
ATTACAAATCCAGTTCCCCGCTGCCTACTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAA
AAAACATCAAGCTGTACAAGATCTACCACCAGCCAACACATTTGTGGGAGCAGGAGACAACATT
TCAATTGGATCAGATCACTGCTCTGAGTACAGCTGTCAAACCAGTAACAAGTACAGCAAACAGA
TGCGTGTACATCCATACATTACGGTGTTTGGCTGAATTCCACTCTAATACGATGTTCCAATTTA
CACCATACTCTGTCACCACCTTGCTACTCCGACACCTGCTGGAGCCTGACCTTGGCCGTGGGGT
GTCAGCCAACCACTGTTTGTTCCCCTTGTTGTGCATTTTATTTTCAAGCCTTTTTTCCCTACTT
AGGGAAAACAAATAGTTTGAAAGCAAGTTAAGGTCCAAAGAGGCAGTATTAATACAGGCATGTA
TTATTCACAGATGTCTACAGTTCTGTTCTCAAAGAGATGGCTAGCAACCGCTAACACTTGATAA
AAAAATCATTAAGAAAAAAACCCAAAACATATTTCGATAATAGTAACTCTAAGGACTTTGGCTT
TGTGTGAACAAAGGGAAATTCAGTTTCTTACATCTTCATCTACAGTACACTAAATACTGATTTC
GAATAAAACCCTAAATTGATCAGTGTTTTCTCTGTCTCATGTGATCACAACTTCTTCCAGCTAG
GCAGACAGCTCTTGCCAAATCTGTGTTATAATTCTGAATGTCACTATGTGCTTTTGTGTTTTTA
CCCACATATGAATATTAAAGACTTCAAGCACTTTAATAAAATATATTAGTCTGTGACTTTCTGC
GTCTATCACAGACGCTGCAATGGGTTAAATTTTCCTTAATCTTGAAATAAACAGCCTGTAGAAT
TTTTAA

hide sequence

RefSeq Acc Id:

XM_008770189 ⟹ XP_008768411

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	54,837,220 - 55,081,632 (-)	NCBI

Sequence:

show sequence

GAGGGGAGGGCAGGCGGCCAGCCCCGGAGGAGGGGGGTGACGAGGGGGGTTGTGGTTAGAAGGA
GCAGTAGCAGCAGCAGCAAGAGAAGATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGG
TGCTTGGGCTGTTGTCTCCTTCTGCCGCTCTGCTTCAGCCTGGCTGCCGCCAAGCAGCTGCTCC
GGTACCGGCTGGCTGAGGAGGGCCCCGCCGACGTGCGGATCGGCAATGTGGCCTCGGACCTGGG
CATCGTGACCGGTTCTGGTGAGGTGACTTTCAGCCTTGAGTCTGGCTCTGAGTATCTGAAGATT
GACAACCTCACCGGCGAGCTGAGCACCAGCGAGCGGCGCATCGACCGAGAGAAGCTGCCCCAAT
GTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGATAGGGCCCTC
GCAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACGCCC
ACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGACCTGTAGGCACGCTCTACC
TGCTGCCCACGGCCACCGATCGTGACTTTGGTCGCAACGGCATCGAGCGCTACGAGCTGCTCCA
GGAGCCCGGGGGTGGTGGCGGCGGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCC
TACCCAGGGGGCGGCGGGAACAGCGGGAGCGGCGGCGGCTCTGGGGGATCCAAGCGGCGGCTGG
ACGCGCCTGAGGGTGGCGGTGGGACTGGTCCAAGTGGTCGAAGCAGTGTGTTCGAGCTGCAGGT
GGCGGACACTCCAGACGGCGAGAAACAACCGCAGCTGATAGTGAAGGGGGCGCTGGACCGGGAG
CAGAGAGATTCCTATGAACTGACCCTCCGAGTGCGCGATGGGGGCGACCCACCTCGGTCCTCTC
AGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACAACAGCCCTCGCTTCGAGAAGAGCGT
GTATGAGGCTGATCTGGCTGAGAACAGCGCTCCCGGCACCCCCATCCTACAGTTGCGCGCCACC
GATTTGGACGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCGGCCACCGAGTCGGTGA
GACGGCTACTGCGTCTGGATGAAACATCGGGCTGGCTCAGTGTCTTACACCGTATCGACCGCGA
GGAAGTGAATCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACCGAT
AAGGCCACCGTGGTCCTCAATATCAAAGATGAGAACGACAACGTTCCCTCCATCGAAATCCGCA
AGATAGGGCGCATTCCGCTTAAGGACGGGGTGGCCAACGTGGCCGAAGACGTCCTGGTGGACAC
CCCCATCGCCCTGGTACAAGTGTCCGACAGAGACCAAGGCGAGAACGGGGTAGTCACCTGTACT
GTGGTGGGAGATGTGCCTTTTCAGCTTAAGCCAGCCAGCGACACCGAGGGAGATCAGAACAAGA
AAAAGTACTTCCTGCACACATCAGCCCCACTGGACTATGAGACCACCCGGGAGTTTAACGTGGT
CATAGTAGCTGTGGACTCCGGCAGTCCCAGCCTCTCCAGCAACAATTCCTTGGTGGTCAAGGTG
GGAGACACCAACGACAACCCTCCTGTCTTTGGCCAGTCGGTGGTCGAGGTTTACTTTCCAGAAA
ACAACATTCCCGGGGAGAGGGTAGCCACGGTGCTGGCGACAGACGCTGACAGCGGGAAGAATGC
AGAGATAGCCTACTCGCTGGACTCTTCAGTGATGGGGACCTTTGCCATCGATCCCGATTCTGGG
GACATCCTGGTCAATACAGTATTGGACCGGGAGCAGACTGACAGGTATGAGTTTAAAGTTAATG
CCAAAGACAAAGGCATTCCTGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCTGATAA
AAATGACAACGACCCTAAGTTTATGCAGGATGTCTTTACCTTTTATGTGAAGGAAAACTTGCAG
CCCAACAGCCCTGTGGGTATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGA
GTCTGTACATAGAGGAGAACAGTAACATTTTTTCTATTGAGAATGACACAGGGACCATTTACTC
CACGATGTCTTTTGACAGGGAACATCAGACAACATACACTTTCAGAGTGAAGGCAGTGGATGGA
GGAGATCCTCCCAGGTCGGCCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAATG
CTCCCACAGTTACCCTTCCCAGAAATATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAG
GACAGTAGTAGCGACAGTGTTGGCAACAGACAGCGACGATGGCATCAATGCAGACTTGAACTAT
AGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGATTGATTCCACCAGTGGTGTGGTTTCCT
TAGTGGGGAAACTCACCCAAAAGCATTATGGCTTGCACAGGCTGGTTGTGCAAGTGAATGACAG
CGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTGTTTGTCAATGAAAGTGTTTCCAAT
GCAACTGTGATTGACTCTCAGATAGTCCGAAGTCTGCACACCCCACTCACCCAGGATATAGCTG
GTGACCCAAGCTATGAAATTAGCAAACAGAGACTCAGTATTGTCATTGGGGTGGTGGCTGGCAT
TATGACTGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAGTAAA
AATGGCTATGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAAT
CTAAGAAGCCTAAAAAGGACAAGAAAAACAAAAAATCTAAACAGCCACTCTACAGCAGCATCGT
CACTGTTGAAGCTTCTAAACCGAATGGACAGAGGTATGACAGTGTCAATGAGAAGCTGTCAGAC
AGCCCCAGCATGGGCCGATACCGATCTGTTAACGGTGGGCCTGGCAGTCCAGACCTGGCAAGGC
ATTACAAATCCAGTTCCCCGCTGCCTACTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAA
AAAACATCAAGCTGTACAAGATCTACCACCAGCCAACACATTTGTGGGAGCAGGAGACAACATT
TCAATTGGATCAGATCACTGCTCTGAGTACAGCTGTCAAACCAGTAACAAGTACAGCAAACAGC
CGTTTCGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGGGTCACTGCA
GAGTTGCTATGACAGCGGGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAGTTCATCAGGGCCA
AGACTGGGTGCCCTTCCACTCCCAGAGGACAACTATGAGAGGACCACGCCGGATGGCAGTGTTG
GTGAGGCAGAGCATATGGAAAATGGTGTTGCTGCCATCACTACCTTTCCCTTTCTTCCCTTTCC
TCATGGCAAGACGCATGGAAGAAGAGTGCTGTTAAGGCCTCTCCATTAATCAACAGGTATGGCG
GTCCTCAGCTGCCCCTCTCTTAGCTTTCCACTGCTGGTCTAGCTATCACTTTCAAACATAGAAG
ACATGATTATCCACTACACAGAGCTTAAAAGTAAGAAAGGACCCAGTTTCTCTATATTTTCCAC
ATGTGACACATTGCTGTCTTTCCTCCAATCTGTAGAACTTTCCCTCTTGTATGTAGCATATAGA
AAAATTAATGATACAGTTCTCAAAAAGGTGTTATATCCAACCAATTGAAAAGAGATGAACTTGT
ATTTATCACTATGTCACTTTCAGCCTTCTATAAATACTTATTGATACAATGCTTAGAAAGAGCT
CTCAGAGACTGAACCACCAACCAAAGAGCATACAAGGGCTAGATCAACACCCCTCACTCTCAAC
ATATTTGTAGCAGATGTGCAGCTCAGACTTCAGGAAGGTCCAGAACAAGTGGAGCAGGCGCAAT
CCCAAAAGTTGCTGGAGAATGTTTTTCTAGCTGGGCTGCCTTGTCTGGCTTCAGTGGGACGAAA
TGCCTAACCCTACAGAGACTTGATGATCCAGGTGGGCAGCTACTCAAGGAGAGAACTACACCCT
CTAAGAGGAGAGTGGGATTAGGGGGATAGGAAAAGGACTATTGGAGGGGGGACCAGGAATAGGA
GAAGTGATCTTAAAATAAAAATTTTTTGTGGATTTTAATTAAGAATTTAGTCTTCTTTGCATTT
TAGAAGCATTGTACAAAATGATACATTAGTTGCAATGCCTATCACTGAGTTATAAAACTTAGGT
GTAAGCCAGTTCATATATATCTGGATTTAAATCCAAACTGCCAATCTGATGTTAAACACAATGC
ATGGCAATTACTCTTGGAAATACTTTTGCCTTGTCAATTTGTCTGGTGGTATTTGAGGAAGATG
GAAGAGACTAGTGTGTTCAAGTATCTCAAGATACCCTTAATTCAGAATATTACATTTTGAAAGG
AACTGGGCCCTCAGGGCACAGTCTAGCAGTCATGACTAATAAAACATAAATTCATAGTCATCCA
CGGACAACCTCCGTCCTCTTGATTTCCCCTTCCACTGGTGGAACCAGTCTTTCTGGCTCCTGCA
GGGACTTGCTGCAGAGGTCCTAAGGCTCCACATGTAGTCCTGTGACTTTCTCTGGCTCTTTGAG
GCATATGACTACAATCCTGCCTTTGGGCTAGGAAGAGTGTTGGCAGATGTCTTTAAACAAAACT
AAGTGTGCCTGTAAGTGTGACTGTGTGGGAGAACTATGTGTGCAGTCCTCAGAACAGATGAGTA
TTAAAATAGCTTTTACTTATATATGTTTAACTGCAGTTCAAAGACAATAAAGAATTGTTTTACT
GTATCTAAGTAAGTTGAAATGTCATCAAACCTGAAAAGGCAATGAATCTCAGACAAGGTGATTA
ATCTTTAATTAATCTTTAATTAACATACAGCTTCCTATCAAATGATCACTGCTTCAGAAGGCTT
TATTTTTATGTTTAATACAACCAATTCTCCTGCCATCACATCTGACTCAACACAGTCAGTTGTT
CATGCCCACAGGTTTTTGTGTAGTTGTGCTACATACACAGAATATTTCACCAATGCCTGTTTGA
ACGTGTAGTTACAGCCTAATTAGAGGTTCCTCTGTCAGAATTTTGGGCTTTATTTTCTTACAAA
TTTATCTACATCAATGTATTATTTCCAAAAATGTTGATCTGTGTATAATAGATCTGAGCCCTGA
GGACTGCTGATGCCTAATGTAGAAAGCTCACTCAGTACTGTCTTGAGTGAAATGGATCTTGTGT
AGGTCCTTCTGCATCCCATGCCATGTAGATACTCACAGTGACCTCACGATTTATAGAGGAGCAG
CTGCACATAGCTTTTGATGTATGCATCTTTAGTGTGCATTTGAGTGAATCTTTACAGAGCACTC
ATTTTTGACCCCCACATAAAGATGAAATTTTATCTTCGCTTCCATTTTTATTTTTATATATTAC
TATTTCTTTTATATTCCTTATAGCTTGTGGCTTTGGGGTATTATTAATCCCTGAGGTTATTTAC
TATAATATTCCCAGAGGAACGATCCATATATTCCTTCATATTTAAATTTAAAATTTAAAATTTA
AGATTTTCACACACTAATTGATTATTCATTTCCACAAAATATACTAAATAGGATAATTGAAAAG
AAACCAACATTTTTACAGCCTAAGAATAAAAAAAGGTCAAGAAAGGTGTTTAATAAATTTGAAA
AGTACAAATCACAAACATTGTACCTGATTTATGTGAAAATCAATAGAATGCATGTTACCAGTAT
AAAAGTAAACTTATAGATATATTCTCTTTTTAAGAAAGAGAATAGATCTAAAATTTAGATTCAG
ATACCAAAGTAAGCAGAGAAAAATTTCTTGGATAAAAAGAATGGGAGATTTTAAAAAGTTTAAA
GTAATTTTTAAAATGAAGGAAATATTGCTGGAAAATGGATACTGAACAAACTTTAAAATAATAT
GCAATAACACTGTGTAATGAAAATCAACACGACCAGAAAAAGAATTTCTTTTTACTTATTTATG
AATTTATTTATGAATTGGCTCTTCCTCTATAGAAAAGCCTTCATGCTAATGTGGCTGTGACAGA
TTCCTGAGCATCCTAGGATGTATTAATTTAAGTATATCATATTCTTATTTTTTTAGTATGTCAT
ATTCTTTAATAAGTCCTTTTGTGGCAACAGTACTTCTCGGTATTGGTAGGGCCAAATGCATTGA
TTTTTGAGCTATGTATGTTCAATGAAAAAGGTAGTTCCCTGAGAGCAGAGTTGAAATAGGACTT
GATGGAGAAGTAATGCCCATGTCAAAATATTCCACCTGACCAAGAAGTCCAAAATGAATGAGTT
GATCAGTTCATATCTAGAGATGTACAGCTTGGGTTGAGCCTTTTTTTTAATGTGGACTGACTCG
TGCATGGAATACATGATCTTTTGTTTTTGTTTTATTACTCCCAGAATTTTAAAAGTGAAGAGCT
AGATCAATGGTCGACAAATGCAGTGTTAGAGAATGCATGCATGCACCATATCCATCTAGAAGGC
TTTCACCTGAGTGCATGAGGAATCTCTGTGACACAAAATGTAAAGAAGGCTCACTCTGGTATAA
TTTTGTTCTCCACTTTCTTTCTCCCTCCCTTCTTCCTTCCCTCTCTCCGTCTCTTCTCCCACCC
CACCCCTCAGTACAGTTGAACCGAAAATTTCTTTCCTTTAACTTGCCCCTGTTTATCAGTATTT
CCTTGGTGGGAGGGAGCTAAATGCTACTTCTTTTTCCAATGAAAGGTTTTTTTTTTCAGATTTA
AATTAAACTGATGATACTGTGTCAACACATCTAAATGTTTATGTATCTCTGGATAGTCTTTTCT
GGTTTATTGCTCAGCCATTTAAATTTTTCCATTA

hide sequence

RefSeq Acc Id:

XM_017599291 ⟹ XP_017454780

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	54,653,266 - 55,081,632 (-)	NCBI

Sequence:

show sequence

GAGGGGAGGGCAGGCGGCCAGCCCCGGAGGAGGGGGGTGACGAGGGGGGTTGTGGTTAGAAGGA
GCAGTAGCAGCAGCAGCAAGAGAAGATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGG
TGCTTGGGCTGTTGTCTCCTTCTGCCGCTCTGCTTCAGCCTGGCTGCCGCCAAGCAGCTGCTCC
GGTACCGGCTGGCTGAGGAGGGCCCCGCCGACGTGCGGATCGGCAATGTGGCCTCGGACCTGGG
CATCGTGACCGGTTCTGGTGAGGTGACTTTCAGCCTTGAGTCTGGCTCTGAGTATCTGAAGATT
GACAACCTCACCGGCGAGCTGAGCACCAGCGAGCGGCGCATCGACCGAGAGAAGCTGCCCCAAT
GTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGATAGGGCCCTC
GCAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACGCCC
ACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGACCTGTAGGCACGCTCTACC
TGCTGCCCACGGCCACCGATCGTGACTTTGGTCGCAACGGCATCGAGCGCTACGAGCTGCTCCA
GGAGCCCGGGGGTGGTGGCGGCGGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCC
TACCCAGGGGGCGGCGGGAACAGCGGGAGCGGCGGCGGCTCTGGGGGATCCAAGCGGCGGCTGG
ACGCGCCTGAGGGTGGCGGTGGGACTGGTCCAAGTGGTCGAAGCAGTGTGTTCGAGCTGCAGGT
GGCGGACACTCCAGACGGCGAGAAACAACCGCAGCTGATAGTGAAGGGGGCGCTGGACCGGGAG
CAGAGAGATTCCTATGAACTGACCCTCCGAGTGCGCGATGGGGGCGACCCACCTCGGTCCTCTC
AGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACAACAGCCCTCGCTTCGAGAAGAGCGT
GTATGAGGCTGATCTGGCTGAGAACAGCGCTCCCGGCACCCCCATCCTACAGTTGCGCGCCACC
GATTTGGACGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCGGCCACCGAGTCGGTGA
GACGGCTACTGCGTCTGGATGAAACATCGGGCTGGCTCAGTGTCTTACACCGTATCGACCGCGA
GGAAGTGAATCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACCGAT
AAGGCCACCGTGGTCCTCAATATCAAAGATGAGAACGACAACGTTCCCTCCATCGAAATCCGCA
AGATAGGGCGCATTCCGCTTAAGGACGGGGTGGCCAACGTGGCCGAAGACGTCCTGGTGGACAC
CCCCATCGCCCTGGTACAAGTGTCCGACAGAGACCAAGGCGAGAACGGGGTAGTCACCTGTACT
GTGGTGGGAGATGTGCCTTTTCAGCTTAAGCCAGCCAGCGACACCGAGGGAGATCAGAACAAGA
AAAAGTACTTCCTGCACACATCAGCCCCACTGGACTATGAGACCACCCGGGAGTTTAACGTGGT
CATAGTAGCTGTGGACTCCGGCAGTCCCAGCCTCTCCAGCAACAATTCCTTGGTGGTCAAGGTG
GGAGACACCAACGACAACCCTCCTGTCTTTGGCCAGTCGGTGGTCGAGGTTTACTTTCCAGAAA
ACAACATTCCCGGGGAGAGGGTAGCCACGGTGCTGGCGACAGACGCTGACAGCGGGAAGAATGC
AGAGATAGCCTACTCGCTGGACTCTTCAGTGATGGGGACCTTTGCCATCGATCCCGATTCTGGG
GACATCCTGGTCAATACAGTATTGGACCGGGAGCAGACTGACAGGTATGAGTTTAAAGTTAATG
CCAAAGACAAAGGCATTCCTGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCTGATAA
AAATGACAACGACCCTAAGTTTATGCAGGATGTCTTTACCTTTTATGTGAAGGAAAACTTGCAG
CCCAACAGCCCTGTGGGTATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGA
GTCTGTACATAGAGGAGAACAGTAACATTTTTTCTATTGAGAATGACACAGGGACCATTTACTC
CACGATGTCTTTTGACAGGGAACATCAGACAACATACACTTTCAGAGTGAAGGCAGTGGATGGA
GGAGATCCTCCCAGGTCGGCCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAATG
CTCCCACAGTTACCCTTCCCAGAAATATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAG
GACAGTAGTAGCGACAGTGTTGGCAACAGACAGCGACGATGGCATCAATGCAGACTTGAACTAT
AGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGATTGATTCCACCAGTGGTGTGGTTTCCT
TAGTGGGGAAACTCACCCAAAAGCATTATGGCTTGCACAGGCTGGTTGTGCAAGTGAATGACAG
CGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTGTTTGTCAATGAAAGTGTTTCCAAT
GCAACTGTGATTGACTCTCAGATAGTCCGAAGTCTGCACACCCCACTCACCCAGGATATAGCTG
GTGACCCAAGCTATGAAATTAGCAAACAGAGACTCAGTATTGTCATTGGGGTGGTGGCTGGCAT
TATGACTGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAGTAAA
AATGGCTATGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAAT
CTAAGAAGCCTAAAAAGGACAAGAAAAACAAAAAATCTAAACAGCCACTCTACAGCAGCATCGT
CACTGTTGAAGCTTCTAAACCGAATGGACAGAGGTATGACAGTGTCAATGAGAAGCTGTCAGAC
AGCCCCAGCATGGGCCGATACCGATCTGTTAACGGTGGGCCTGGCAGTCCAGACCTGGCAAGGC
ATTACAAATCCAGTTCCCCGCTGCCTACTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAA
AAAACATCAAGCTGTACAAGATCTACCACCAGCCAACACATTTGTGGGAGCAGGAGACAACATT
TCAATTGGATCAGATCACTGCTCTGAGTACAGCTGTCAAACCAGTAACAAGTACAGCAAACAGC
CGTTTCGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGGGTCACTGCA
GAGTTGCTATGACAGCGGGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAGTTCATCAGGGCCA
AGACTGGGTGCCCTTCCACTCCCAGAGGACAACTATGAGAGGACCACGCCGGATGGCAGTGTTG
GTGAGGCAGAGCATATGGAAAATGGTGTTGCTGCCATCACTACCTTTCCCTTTCTTCCCTTTCC
TCATGGCAAGACGCATGGAAGAAGAGTGCTGTTAAGGCCTCTCCATTAATCAACAGATTCAAGG
CCTCTTCCGGATGTAGCGCTGACTGGCAAGTGCACCCGTGAATGTGACGAGTATGGCCATTCA

hide sequence

RefSeq Acc Id:

XM_017599292 ⟹ XP_017454781

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	54,837,220 - 55,081,632 (-)	NCBI

Sequence:

show sequence

GAGGGGAGGGCAGGCGGCCAGCCCCGGAGGAGGGGGGTGACGAGGGGGGTTGTGGTTAGAAGGA
GCAGTAGCAGCAGCAGCAAGAGAAGATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGG
TGCTTGGGCTGTTGTCTCCTTCTGCCGCTCTGCTTCAGCCTGGCTGCCGCCAAGCAGCTGCTCC
GGTACCGGCTGGCTGAGGAGGGCCCCGCCGACGTGCGGATCGGCAATGTGGCCTCGGACCTGGG
CATCGTGACCGGTTCTGGTGAGGTGACTTTCAGCCTTGAGTCTGGCTCTGAGTATCTGAAGATT
GACAACCTCACCGGCGAGCTGAGCACCAGCGAGCGGCGCATCGACCGAGAGAAGCTGCCCCAAT
GTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGATAGGGCCCTC
GCAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACGCCC
ACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGACCTGTAGGCACGCTCTACC
TGCTGCCCACGGCCACCGATCGTGACTTTGGTCGCAACGGCATCGAGCGCTACGAGCTGCTCCA
GGAGCCCGGGGGTGGTGGCGGCGGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCC
TACCCAGGGGGCGGCGGGAACAGCGGGAGCGGCGGCGGCTCTGGGGGATCCAAGCGGCGGCTGG
ACGCGCCTGAGGGTGGCGGTGGGACTGGTCCAAGTGGTCGAAGCAGTGTGTTCGAGCTGCAGGT
GGCGGACACTCCAGACGGCGAGAAACAACCGCAGCTGATAGTGAAGGGGGCGCTGGACCGGGAG
CAGAGAGATTCCTATGAACTGACCCTCCGAGTGCGCGATGGGGGCGACCCACCTCGGTCCTCTC
AGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACAACAGCCCTCGCTTCGAGAAGAGCGT
GTATGAGGCTGATCTGGCTGAGAACAGCGCTCCCGGCACCCCCATCCTACAGTTGCGCGCCACC
GATTTGGACGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCGGCCACCGAGTCGGTGA
GACGGCTACTGCGTCTGGATGAAACATCGGGCTGGCTCAGTGTCTTACACCGTATCGACCGCGA
GGAAGTGAATCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACCGAT
AAGGCCACCGTGGTCCTCAATATCAAAGATGAGAACGACAACGTTCCCTCCATCGAAATCCGCA
AGATAGGGCGCATTCCGCTTAAGGACGGGGTGGCCAACGTGGCCGAAGACGTCCTGGTGGACAC
CCCCATCGCCCTGGTACAAGTGTCCGACAGAGACCAAGGCGAGAACGGGGTAGTCACCTGTACT
GTGGTGGGAGATGTGCCTTTTCAGCTTAAGCCAGCCAGCGACACCGAGGGAGATCAGAACAAGA
AAAAGTACTTCCTGCACACATCAGCCCCACTGGACTATGAGACCACCCGGGAGTTTAACGTGGT
CATAGTAGCTGTGGACTCCGGCAGTCCCAGCCTCTCCAGCAACAATTCCTTGGTGGTCAAGGTG
GGAGACACCAACGACAACCCTCCTGTCTTTGGCCAGTCGGTGGTCGAGGTTTACTTTCCAGAAA
ACAACATTCCCGGGGAGAGGGTAGCCACGGTGCTGGCGACAGACGCTGACAGCGGGAAGAATGC
AGAGATAGCCTACTCGCTGGACTCTTCAGTGATGGGGACCTTTGCCATCGATCCCGATTCTGGG
GACATCCTGGTCAATACAGTATTGGACCGGGAGCAGACTGACAGGTATGAGTTTAAAGTTAATG
CCAAAGACAAAGGCATTCCTGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCTGATAA
AAATGACAACGACCCTAAGTTTATGCAGGATGTCTTTACCTTTTATGTGAAGGAAAACTTGCAG
CCCAACAGCCCTGTGGGTATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGA
GTCTGTACATAGAGGAGAACAGTAACATTTTTTCTATTGAGAATGACACAGGGACCATTTACTC
CACGATGTCTTTTGACAGGGAACATCAGACAACATACACTTTCAGAGTGAAGGCAGTGGATGGA
GGAGATCCTCCCAGGTCGGCCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAATG
CTCCCACAGTTACCCTTCCCAGAAATATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAG
GACAGTAGTAGCGACAGTGTTGGCAACAGACAGCGACGATGGCATCAATGCAGACTTGAACTAT
AGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGATTGATTCCACCAGTGGTGTGGTTTCCT
TAGTGGGGAAACTCACCCAAAAGCATTATGGCTTGCACAGGCTGGTTGTGCAAGTGAATGACAG
CGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTGTTTGTCAATGAAAGTGTTTCCAAT
GCAACTGTGATTGACTCTCAGATAGTCCGAAGTCTGCACACCCCACTCACCCAGGATATAGCTG
GTGACCCAAGCTATGAAATTAGCAAACAGAGACTCAGTATTGTCATTGGGGTGGTGGCTGGCAT
TATGACTGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAGTAAA
AATGGCTATGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAAT
CTAAGAAGCCTAAAAAGGACAAGAAAAACAAAAAATCTAAACAGCCACTCTACAGCAGCATCGT
CACTGTTGAAGCTTCTAAACCGAATGGACAGAGGTATGACAGTGTCAATGAGAAGCTGTCAGAC
AGCCCCAGCATGGGCCGATACCGATCTGTTAACGGTGGGCCTGGCAGTCCAGACCTGGCAAGGC
ATTACAAATCCAGTTCCCCGCTGCCTACTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAA
AAAACATCAAGCTGTACAAGATCTACCACCAGCCAACACATTTGTGGGAGCAGGAGACAACATT
TCAATTGGATCAGATCACTGCTCTGAGTACAGCTGTCAAACCAGTAACAAGTACAGCAAACAGC
CGTTTCGTAGAGTGACGTTTTCTGTTGTGAGTCAGCCTCAGGACCCACATCAGGGGTCACTGCA
GAGTTGCTATGACAGCGGGCTGGAGGAGTCAGAAACACCAAGCAGTAAGAGTTCATCAGGGCCA
AGACTGGGTGCCCTTCCACTCCCAGAGGACAACTATGAGAGGACCACGCCGGATGGCAGTGTTG
GTGTTGCTGCCATCACTACCTTTCCCTTTCTTCCCTTTCCTCATGGCAAGACGCATGGAAGAAG
AGTGCTGTTAAGGCCTCTCCATTAATCAACAGGTATGGCGGTCCTCAGCTGCCCCTCTCTTAGC
TTTCCACTGCTGGTCTAGCTATCACTTTCAAACATAGAAGACATGATTATCCACTACACAGAGC
TTAAAAGTAAGAAAGGACCCAGTTTCTCTATATTTTCCACATGTGACACATTGCTGTCTTTCCT
CCAATCTGTAGAACTTTCCCTCTTGTATGTAGCATATAGAAAAATTAATGATACAGTTCTCAAA
AAGGTGTTATATCCAACCAATTGAAAAGAGATGAACTTGTATTTATCACTATGTCACTTTCAGC
CTTCTATAAATACTTATTGATACAATGCTTAGAAAGAGCTCTCAGAGACTGAACCACCAACCAA
AGAGCATACAAGGGCTAGATCAACACCCCTCACTCTCAACATATTTGTAGCAGATGTGCAGCTC
AGACTTCAGGAAGGTCCAGAACAAGTGGAGCAGGCGCAATCCCAAAAGTTGCTGGAGAATGTTT
TTCTAGCTGGGCTGCCTTGTCTGGCTTCAGTGGGACGAAATGCCTAACCCTACAGAGACTTGAT
GATCCAGGTGGGCAGCTACTCAAGGAGAGAACTACACCCTCTAAGAGGAGAGTGGGATTAGGGG
GATAGGAAAAGGACTATTGGAGGGGGGACCAGGAATAGGAGAAGTGATCTTAAAATAAAAATTT
TTTGTGGATTTTAATTAAGAATTTAGTCTTCTTTGCATTTTAGAAGCATTGTACAAAATGATAC
ATTAGTTGCAATGCCTATCACTGAGTTATAAAACTTAGGTGTAAGCCAGTTCATATATATCTGG
ATTTAAATCCAAACTGCCAATCTGATGTTAAACACAATGCATGGCAATTACTCTTGGAAATACT
TTTGCCTTGTCAATTTGTCTGGTGGTATTTGAGGAAGATGGAAGAGACTAGTGTGTTCAAGTAT
CTCAAGATACCCTTAATTCAGAATATTACATTTTGAAAGGAACTGGGCCCTCAGGGCACAGTCT
AGCAGTCATGACTAATAAAACATAAATTCATAGTCATCCACGGACAACCTCCGTCCTCTTGATT
TCCCCTTCCACTGGTGGAACCAGTCTTTCTGGCTCCTGCAGGGACTTGCTGCAGAGGTCCTAAG
GCTCCACATGTAGTCCTGTGACTTTCTCTGGCTCTTTGAGGCATATGACTACAATCCTGCCTTT
GGGCTAGGAAGAGTGTTGGCAGATGTCTTTAAACAAAACTAAGTGTGCCTGTAAGTGTGACTGT
GTGGGAGAACTATGTGTGCAGTCCTCAGAACAGATGAGTATTAAAATAGCTTTTACTTATATAT
GTTTAACTGCAGTTCAAAGACAATAAAGAATTGTTTTACTGTATCTAAGTAAGTTGAAATGTCA
TCAAACCTGAAAAGGCAATGAATCTCAGACAAGGTGATTAATCTTTAATTAATCTTTAATTAAC
ATACAGCTTCCTATCAAATGATCACTGCTTCAGAAGGCTTTATTTTTATGTTTAATACAACCAA
TTCTCCTGCCATCACATCTGACTCAACACAGTCAGTTGTTCATGCCCACAGGTTTTTGTGTAGT
TGTGCTACATACACAGAATATTTCACCAATGCCTGTTTGAACGTGTAGTTACAGCCTAATTAGA
GGTTCCTCTGTCAGAATTTTGGGCTTTATTTTCTTACAAATTTATCTACATCAATGTATTATTT
CCAAAAATGTTGATCTGTGTATAATAGATCTGAGCCCTGAGGACTGCTGATGCCTAATGTAGAA
AGCTCACTCAGTACTGTCTTGAGTGAAATGGATCTTGTGTAGGTCCTTCTGCATCCCATGCCAT
GTAGATACTCACAGTGACCTCACGATTTATAGAGGAGCAGCTGCACATAGCTTTTGATGTATGC
ATCTTTAGTGTGCATTTGAGTGAATCTTTACAGAGCACTCATTTTTGACCCCCACATAAAGATG
AAATTTTATCTTCGCTTCCATTTTTATTTTTATATATTACTATTTCTTTTATATTCCTTATAGC
TTGTGGCTTTGGGGTATTATTAATCCCTGAGGTTATTTACTATAATATTCCCAGAGGAACGATC
CATATATTCCTTCATATTTAAATTTAAAATTTAAAATTTAAGATTTTCACACACTAATTGATTA
TTCATTTCCACAAAATATACTAAATAGGATAATTGAAAAGAAACCAACATTTTTACAGCCTAAG
AATAAAAAAAGGTCAAGAAAGGTGTTTAATAAATTTGAAAAGTACAAATCACAAACATTGTACC
TGATTTATGTGAAAATCAATAGAATGCATGTTACCAGTATAAAAGTAAACTTATAGATATATTC
TCTTTTTAAGAAAGAGAATAGATCTAAAATTTAGATTCAGATACCAAAGTAAGCAGAGAAAAAT
TTCTTGGATAAAAAGAATGGGAGATTTTAAAAAGTTTAAAGTAATTTTTAAAATGAAGGAAATA
TTGCTGGAAAATGGATACTGAACAAACTTTAAAATAATATGCAATAACACTGTGTAATGAAAAT
CAACACGACCAGAAAAAGAATTTCTTTTTACTTATTTATGAATTTATTTATGAATTGGCTCTTC
CTCTATAGAAAAGCCTTCATGCTAATGTGGCTGTGACAGATTCCTGAGCATCCTAGGATGTATT
AATTTAAGTATATCATATTCTTATTTTTTTAGTATGTCATATTCTTTAATAAGTCCTTTTGTGG
CAACAGTACTTCTCGGTATTGGTAGGGCCAAATGCATTGATTTTTGAGCTATGTATGTTCAATG
AAAAAGGTAGTTCCCTGAGAGCAGAGTTGAAATAGGACTTGATGGAGAAGTAATGCCCATGTCA
AAATATTCCACCTGACCAAGAAGTCCAAAATGAATGAGTTGATCAGTTCATATCTAGAGATGTA
CAGCTTGGGTTGAGCCTTTTTTTTAATGTGGACTGACTCGTGCATGGAATACATGATCTTTTGT
TTTTGTTTTATTACTCCCAGAATTTTAAAAGTGAAGAGCTAGATCAATGGTCGACAAATGCAGT
GTTAGAGAATGCATGCATGCACCATATCCATCTAGAAGGCTTTCACCTGAGTGCATGAGGAATC
TCTGTGACACAAAATGTAAAGAAGGCTCACTCTGGTATAATTTTGTTCTCCACTTTCTTTCTCC
CTCCCTTCTTCCTTCCCTCTCTCCGTCTCTTCTCCCACCCCACCCCTCAGTACAGTTGAACCGA
AAATTTCTTTCCTTTAACTTGCCCCTGTTTATCAGTATTTCCTTGGTGGGAGGGAGCTAAATGC
TACTTCTTTTTCCAATGAAAGGTTTTTTTTTTCAGATTTAAATTAAACTGATGATACTGTGTCA
ACACATCTAAATGTTTATGTATCTCTGGATAGTCTTTTCTGGTTTATTGCTCAGCCATTTAAAT
TTTTCCATTA

hide sequence

RefSeq Acc Id:

XM_017599293 ⟹ XP_017454782

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	54,653,217 - 55,081,632 (-)	NCBI

Sequence:

show sequence

GAGGGGAGGGCAGGCGGCCAGCCCCGGAGGAGGGGGGTGACGAGGGGGGTTGTGGTTAGAAGGA
GCAGTAGCAGCAGCAGCAAGAGAAGATGCTGAGGATGCGGACCACGGGATGGGCGCGCGGCTGG
TGCTTGGGCTGTTGTCTCCTTCTGCCGCTCTGCTTCAGCCTGGCTGCCGCCAAGCAGCTGCTCC
GGTACCGGCTGGCTGAGGAGGGCCCCGCCGACGTGCGGATCGGCAATGTGGCCTCGGACCTGGG
CATCGTGACCGGTTCTGGTGAGGTGACTTTCAGCCTTGAGTCTGGCTCTGAGTATCTGAAGATT
GACAACCTCACCGGCGAGCTGAGCACCAGCGAGCGGCGCATCGACCGAGAGAAGCTGCCCCAAT
GTCAGATGATCTTCGACGAGAACGAATGTTTCCTGGACTTCGAGGTGTCGGTGATAGGGCCCTC
GCAGAGCTGGGTGGACCTGTTTGAGGGTCGGGTCATCGTGCTGGACATCAACGATAACACGCCC
ACCTTCCCGTCGCCGGTGCTCACGCTCACGGTGGAGGAGAACCGACCTGTAGGCACGCTCTACC
TGCTGCCCACGGCCACCGATCGTGACTTTGGTCGCAACGGCATCGAGCGCTACGAGCTGCTCCA
GGAGCCCGGGGGTGGTGGCGGCGGCGGCGAGGGAAGGCGCTTGGGGCCGGCGGACAGCGCCCCC
TACCCAGGGGGCGGCGGGAACAGCGGGAGCGGCGGCGGCTCTGGGGGATCCAAGCGGCGGCTGG
ACGCGCCTGAGGGTGGCGGTGGGACTGGTCCAAGTGGTCGAAGCAGTGTGTTCGAGCTGCAGGT
GGCGGACACTCCAGACGGCGAGAAACAACCGCAGCTGATAGTGAAGGGGGCGCTGGACCGGGAG
CAGAGAGATTCCTATGAACTGACCCTCCGAGTGCGCGATGGGGGCGACCCACCTCGGTCCTCTC
AGGCCATCTTGCGGGTGCTCATCACCGACGTGAATGACAACAGCCCTCGCTTCGAGAAGAGCGT
GTATGAGGCTGATCTGGCTGAGAACAGCGCTCCCGGCACCCCCATCCTACAGTTGCGCGCCACC
GATTTGGACGTAGGGGTCAATGGACAGATCGAGTATGTATTTGGGGCGGCCACCGAGTCGGTGA
GACGGCTACTGCGTCTGGATGAAACATCGGGCTGGCTCAGTGTCTTACACCGTATCGACCGCGA
GGAAGTGAATCAGTTGAGATTCACAGTAATGGCCCGTGACCGCGGGCAGCCCCCCAAGACCGAT
AAGGCCACCGTGGTCCTCAATATCAAAGATGAGAACGACAACGTTCCCTCCATCGAAATCCGCA
AGATAGGGCGCATTCCGCTTAAGGACGGGGTGGCCAACGTGGCCGAAGACGTCCTGGTGGACAC
CCCCATCGCCCTGGTACAAGTGTCCGACAGAGACCAAGGCGAGAACGGGGTAGTCACCTGTACT
GTGGTGGGAGATGTGCCTTTTCAGCTTAAGCCAGCCAGCGACACCGAGGGAGATCAGAACAAGA
AAAAGTACTTCCTGCACACATCAGCCCCACTGGACTATGAGACCACCCGGGAGTTTAACGTGGT
CATAGTAGCTGTGGACTCCGGCAGTCCCAGCCTCTCCAGCAACAATTCCTTGGTGGTCAAGGTG
GGAGACACCAACGACAACCCTCCTGTCTTTGGCCAGTCGGTGGTCGAGGTTTACTTTCCAGAAA
ACAACATTCCCGGGGAGAGGGTAGCCACGGTGCTGGCGACAGACGCTGACAGCGGGAAGAATGC
AGAGATAGCCTACTCGCTGGACTCTTCAGTGATGGGGACCTTTGCCATCGATCCCGATTCTGGG
GACATCCTGGTCAATACAGTATTGGACCGGGAGCAGACTGACAGGTATGAGTTTAAAGTTAATG
CCAAAGACAAAGGCATTCCTGTGCTGCAAGGCAGCACCACGGTGATTGTACAGGTGGCTGATAA
AAATGACAACGACCCTAAGTTTATGCAGGATGTCTTTACCTTTTATGTGAAGGAAAACTTGCAG
CCCAACAGCCCTGTGGGTATGGTCACCGTGATGGATGCTGACAAGGGACGGAATGCAGAGATGA
GTCTGTACATAGAGGAGAACAGTAACATTTTTTCTATTGAGAATGACACAGGGACCATTTACTC
CACGATGTCTTTTGACAGGGAACATCAGACAACATACACTTTCAGAGTGAAGGCAGTGGATGGA
GGAGATCCTCCCAGGTCGGCCACAGCCACAGTCTCTCTCTTTGTGATGGATGAAAATGACAATG
CTCCCACAGTTACCCTTCCCAGAAATATTTCCTACACGTTGCTGCCACCTTCAAGTAATGTCAG
GACAGTAGTAGCGACAGTGTTGGCAACAGACAGCGACGATGGCATCAATGCAGACTTGAACTAT
AGCATTGTGGGAGGGAATCCTTTCAAGCTGTTTGAGATTGATTCCACCAGTGGTGTGGTTTCCT
TAGTGGGGAAACTCACCCAAAAGCATTATGGCTTGCACAGGCTGGTTGTGCAAGTGAATGACAG
CGGCCAGCCTTCCCAGTCCACTACGACTTTGGTGCATGTGTTTGTCAATGAAAGTGTTTCCAAT
GCAACTGTGATTGACTCTCAGATAGTCCGAAGTCTGCACACCCCACTCACCCAGGATATAGCTG
GTGACCCAAGCTATGAAATTAGCAAACAGAGACTCAGTATTGTCATTGGGGTGGTGGCTGGCAT
TATGACTGTGATTCTAATCATTTTAATTGTCATGATGGCAAGATACTGCAGGTCCAAAAGTAAA
AATGGCTATGAAGCTGGCAAAAAAGACCATGAGGACTTTTTTACACCCCAGCAGCATGACAAAT
CTAAGAAGCCTAAAAAGGACAAGAAAAACAAAAAATCTAAACAGCCACTCTACAGCAGCATCGT
CACTGTTGAAGCTTCTAAACCGAATGGACAGAGGTATGACAGTGTCAATGAGAAGCTGTCAGAC
AGCCCCAGCATGGGCCGATACCGATCTGTTAACGGTGGGCCTGGCAGTCCAGACCTGGCAAGGC
ATTACAAATCCAGTTCCCCGCTGCCTACTGTCCAGCTTCACCCCCAGTCACCAACTGCAGGGAA
AAAACATCAAGCTGTACAAGATCTACCACCAGCCAACACATTTGTGGGAGCAGGAGACAACATT
TCAATTGGATCAGATCACTGCTCTGAGTACAGCTGTCAAACCAGTAACAAGTACAGCAAACAGA
TTCAAGGCCTCTTCCGGATGTAGCGCTGACTGGCAAGTGCACCCGTGAATGTGACGAGTATGGC
CATTCAGACTCCTGCTGGATGCCAGTGCGCACTTCCCCAGAGAGGAAGAAGAGCC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001004087	(Get FASTA)	NCBI Sequence Viewer
	XP_006251079	(Get FASTA)	NCBI Sequence Viewer
	XP_006251084	(Get FASTA)	NCBI Sequence Viewer
	XP_006251085	(Get FASTA)	NCBI Sequence Viewer
	XP_008768411	(Get FASTA)	NCBI Sequence Viewer
	XP_017454780	(Get FASTA)	NCBI Sequence Viewer
	XP_017454781	(Get FASTA)	NCBI Sequence Viewer
	XP_017454782	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAU01512	(Get FASTA)	NCBI Sequence Viewer
	AAU01513	(Get FASTA)	NCBI Sequence Viewer
	AAU01514	(Get FASTA)	NCBI Sequence Viewer
	AAU01515	(Get FASTA)	NCBI Sequence Viewer
	EDL99858	(Get FASTA)	NCBI Sequence Viewer
	EDL99859	(Get FASTA)	NCBI Sequence Viewer
	EDL99860	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001004087 ⟸ NM_001004087
- Peptide Label:	precursor
- UniProtKB:	Q68HB5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEV TFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFE GRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGG GEGRRLGPADSAPYPGGGGNSGSGGGSGGSKRRLDAPEGGGGTGPSGRSSVFELQVADTPDGEK QPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAEN SAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFT VMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVS DRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYETTREFNVVIVAVDSGS PSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLATDADSGKNAEIAYSLDS SVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFM QDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREH QTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLA TDSDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTT TLVHVFVNESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIIL IVMMARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDL PPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLE ESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVDSRPLPDVALTGKCTRECDEYGHSDSCWMP VRTSPERKKSQPKLSTFMPVDERGSQEKLANGEAAIMGDRNRNLLNKKLTSSYETFSAASFSKN EEANPEDIPLTKTGEYKPSPVNTLTRREVYL hide sequence

RefSeq Acc Id:	XP_006251079 ⟸ XM_006251017
- Peptide Label:	isoform X1
- UniProtKB:	Q68HB6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEV TFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFE GRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGG GEGRRLGPADSAPYPGGGGNSGSGGGSGGSKRRLDAPEGGGGTGPSGRSSVFELQVADTPDGEK QPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAEN SAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFT VMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVS DRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYETTREFNVVIVAVDSGS PSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLATDADSGKNAEIAYSLDS SVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFM QDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREH QTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLA TDSDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTT TLVHVFVNESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIIL IVMMARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDL PPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLE ESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMENDSRPLPDVALTGKCTRECDEYG HSDSCWMPVRTSPERKKSQPKLSTFMPVDERGSQEKLANGEAAIMGDRNRNLLNKKLTSSYETF SAASFSKNEEANPEDIPLTKTGEYKPSPVNTLTRREVYL hide sequence

RefSeq Acc Id:

XP_006251084 ⟸ XM_006251022

- Peptide Label:

isoform X4

- Sequence:

show sequence

MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEV
TFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFE
GRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGG
GEGRRLGPADSAPYPGGGGNSGSGGGSGGSKRRLDAPEGGGGTGPSGRSSVFELQVADTPDGEK
QPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAEN
SAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFT
VMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVS
DRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYETTREFNVVIVAVDSGS
PSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLATDADSGKNAEIAYSLDS
SVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFM
QDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREH
QTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLA
TDSDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTT
TLVHVFVNESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIIL
IVMMARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN
GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDL
PPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQVDTVQTTNPPGHIEESCKINVCARK

hide sequence

RefSeq Acc Id:	XP_006251085 ⟸ XM_006251023
- Peptide Label:	isoform X5
- UniProtKB:	Q68HB8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEV TFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFE GRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGG GEGRRLGPADSAPYPGGGGNSGSGGGSGGSKRRLDAPEGGGGTGPSGRSSVFELQVADTPDGEK QPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAEN SAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFT VMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVS DRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYETTREFNVVIVAVDSGS PSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLATDADSGKNAEIAYSLDS SVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFM QDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREH QTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLA TDSDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTT TLVHVFVNESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIIL IVMMARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDL PPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQMRVHPYITVFG hide sequence

RefSeq Acc Id:

XP_008768411 ⟸ XM_008770189

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEV
TFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFE
GRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGG
GEGRRLGPADSAPYPGGGGNSGSGGGSGGSKRRLDAPEGGGGTGPSGRSSVFELQVADTPDGEK
QPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAEN
SAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFT
VMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVS
DRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYETTREFNVVIVAVDSGS
PSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLATDADSGKNAEIAYSLDS
SVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFM
QDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREH
QTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLA
TDSDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTT
TLVHVFVNESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIIL
IVMMARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN
GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDL
PPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLE
ESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMENGVAAITTFPFLPFPHGKTHGRR
VLLRPLH

hide sequence

RefSeq Acc Id:

XP_017454782 ⟸ XM_017599293

- Peptide Label:

isoform X6

- Sequence:

show sequence

MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEV
TFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFE
GRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGG
GEGRRLGPADSAPYPGGGGNSGSGGGSGGSKRRLDAPEGGGGTGPSGRSSVFELQVADTPDGEK
QPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAEN
SAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFT
VMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVS
DRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYETTREFNVVIVAVDSGS
PSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLATDADSGKNAEIAYSLDS
SVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFM
QDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREH
QTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLA
TDSDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTT
TLVHVFVNESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIIL
IVMMARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN
GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDL
PPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQIQGLFRM

hide sequence

RefSeq Acc Id:

XP_017454780 ⟸ XM_017599291

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEV
TFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFE
GRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGG
GEGRRLGPADSAPYPGGGGNSGSGGGSGGSKRRLDAPEGGGGTGPSGRSSVFELQVADTPDGEK
QPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAEN
SAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFT
VMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVS
DRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYETTREFNVVIVAVDSGS
PSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLATDADSGKNAEIAYSLDS
SVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFM
QDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREH
QTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLA
TDSDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTT
TLVHVFVNESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIIL
IVMMARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN
GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDL
PPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLE
ESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGEAEHMENGVAAITTFPFLPFPHGKTHGRR
VLLRPLH

hide sequence

RefSeq Acc Id:

XP_017454781 ⟸ XM_017599292

- Peptide Label:

isoform X3

- Sequence:

show sequence

MLRMRTTGWARGWCLGCCLLLPLCFSLAAAKQLLRYRLAEEGPADVRIGNVASDLGIVTGSGEV
TFSLESGSEYLKIDNLTGELSTSERRIDREKLPQCQMIFDENECFLDFEVSVIGPSQSWVDLFE
GRVIVLDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGIERYELLQEPGGGGGG
GEGRRLGPADSAPYPGGGGNSGSGGGSGGSKRRLDAPEGGGGTGPSGRSSVFELQVADTPDGEK
QPQLIVKGALDREQRDSYELTLRVRDGGDPPRSSQAILRVLITDVNDNSPRFEKSVYEADLAEN
SAPGTPILQLRATDLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDREEVNQLRFT
VMARDRGQPPKTDKATVVLNIKDENDNVPSIEIRKIGRIPLKDGVANVAEDVLVDTPIALVQVS
DRDQGENGVVTCTVVGDVPFQLKPASDTEGDQNKKKYFLHTSAPLDYETTREFNVVIVAVDSGS
PSLSSNNSLVVKVGDTNDNPPVFGQSVVEVYFPENNIPGERVATVLATDADSGKNAEIAYSLDS
SVMGTFAIDPDSGDILVNTVLDREQTDRYEFKVNAKDKGIPVLQGSTTVIVQVADKNDNDPKFM
QDVFTFYVKENLQPNSPVGMVTVMDADKGRNAEMSLYIEENSNIFSIENDTGTIYSTMSFDREH
QTTYTFRVKAVDGGDPPRSATATVSLFVMDENDNAPTVTLPRNISYTLLPPSSNVRTVVATVLA
TDSDDGINADLNYSIVGGNPFKLFEIDSTSGVVSLVGKLTQKHYGLHRLVVQVNDSGQPSQSTT
TLVHVFVNESVSNATVIDSQIVRSLHTPLTQDIAGDPSYEISKQRLSIVIGVVAGIMTVILIIL
IVMMARYCRSKSKNGYEAGKKDHEDFFTPQQHDKSKKPKKDKKNKKSKQPLYSSIVTVEASKPN
GQRYDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQDL
PPANTFVGAGDNISIGSDHCSEYSCQTSNKYSKQPFRRVTFSVVSQPQDPHQGSLQSCYDSGLE
ESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVGVAAITTFPFLPFPHGKTHGRRVLLRPLH

hide sequence

RefSeq Acc Id:

ENSRNOP00000045705 ⟸ ENSRNOT00000049245

Protein Domains

Cadherin

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
14	55080595	55080596	G	C	snv	WN/N (MCW)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1303209	AgrOrtholog
Ensembl Genes	ENSRNOG00000012367	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000045705	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000049245	ENTREZGENE, UniProtKB/TrEMBL
InterPro	Cadherin	UniProtKB/TrEMBL
	Cadherin-like	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
	Cadherin_N	UniProtKB/TrEMBL
	Protocadherin	UniProtKB/TrEMBL
KEGG Report	rno:360942	UniProtKB/TrEMBL
NCBI Gene	360942	ENTREZGENE
Pfam	Cadherin	UniProtKB/TrEMBL
	Cadherin_2	UniProtKB/TrEMBL
	Protocadherin	UniProtKB/TrEMBL
PhenoGen	Pcdh7	PhenoGen
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	Cadherin	UniProtKB/TrEMBL
UniGene	Rn.228266	ENTREZGENE
	Rn.230374	ENTREZGENE
UniProt	Q68HB5	ENTREZGENE, UniProtKB/TrEMBL
	Q68HB6	ENTREZGENE, UniProtKB/TrEMBL
	Q68HB7_RAT	UniProtKB/TrEMBL
	Q68HB8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2005-11-17	Pcdh7	protocadherin 7			Symbol and Name status set to approved	1299863	APPROVED
2005-07-14	Pcdh7	protocadherin 7			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)