Pcdh7 (protocadherin 7) - Rat Genome Database

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Gene: Pcdh7 (protocadherin 7) Rattus norvegicus
Analyze
Symbol: Pcdh7
Name: protocadherin 7
RGD ID: 1303209
Description: Predicted to enable calcium ion binding activity. Involved in regulation of postsynapse assembly. Is active in glutamatergic synapse and postsynaptic density. Orthologous to human PCDH7 (protocadherin 7); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: protocadherin-7
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81456,684,817 - 57,114,976 (-)NCBIGRCr8
mRatBN7.21452,471,801 - 52,901,696 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1452,475,610 - 52,902,051 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1452,896,210 - 52,932,506 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1456,862,605 - 57,289,685 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01458,165,063 - 58,592,132 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01454,561,791 - 54,988,844 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01454,649,054 - 55,081,632 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1455,072,200 - 55,081,551 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01454,783,951 - 55,216,900 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41456,609,036 - 57,323,892 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11456,611,426 - 57,326,283 (-)NCBI
Celera1451,655,345 - 52,076,631 (-)NCBICelera
Cytogenetic Map14q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4-diaminotoluene  (ISO)
2-hydroxypropanoic acid  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aflatoxin M1  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
calcitriol  (ISO)
cantharidin  (ISO)
carbon nanotube  (ISO)
cefaloridine  (EXP)
CGP 52608  (ISO)
chloroprene  (ISO)
choline  (ISO)
cisplatin  (ISO)
cocaine  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dexamethasone  (ISO)
diazinon  (ISO)
dibutyl phthalate  (ISO)
dorsomorphin  (ISO)
ethanol  (ISO)
ferric oxide  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
inulin  (ISO)
L-methionine  (ISO)
lead diacetate  (ISO)
leflunomide  (ISO)
levonorgestrel  (ISO)
maneb  (ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nickel atom  (ISO)
nitrofen  (EXP)
NS-398  (ISO)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
paraquat  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenite  (ISO)
sulforaphane  (ISO)
tamoxifen  (ISO)
testosterone  (EXP)
testosterone undecanoate  (ISO)
tetrachloromethane  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (EXP)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. PCDH7 interacts with GluN1 and regulates dendritic spine morphology and synaptic function. Wang Y, etal., Sci Rep. 2020 Jul 2;10(1):10951. doi: 10.1038/s41598-020-67831-8.
6. Fibroblast cell shape and adhesion in vitro is altered by overexpression of the 7a and 7b isoforms of protocadherin 7, but not the 7c isoform. Yoshida K Cell Mol Biol Lett 2003;8(3):735-41.
Additional References at PubMed
PMID:30361391  


Genomics

Comparative Map Data
Pcdh7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81456,684,817 - 57,114,976 (-)NCBIGRCr8
mRatBN7.21452,471,801 - 52,901,696 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1452,475,610 - 52,902,051 (-)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl1452,896,210 - 52,932,506 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1456,862,605 - 57,289,685 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01458,165,063 - 58,592,132 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01454,561,791 - 54,988,844 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01454,649,054 - 55,081,632 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1455,072,200 - 55,081,551 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01454,783,951 - 55,216,900 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41456,609,036 - 57,323,892 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11456,611,426 - 57,326,283 (-)NCBI
Celera1451,655,345 - 52,076,631 (-)NCBICelera
Cytogenetic Map14q11NCBI
PCDH7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38430,720,369 - 31,146,800 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl430,720,369 - 31,146,805 (+)EnsemblGRCh38hg38GRCh38
GRCh37430,721,991 - 31,148,422 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36430,331,135 - 30,757,519 (+)NCBINCBI36Build 36hg18NCBI36
Build 34430,398,305 - 30,821,017NCBI
Celera431,175,622 - 31,601,081 (+)NCBICelera
Cytogenetic Map4p15.1NCBI
HuRef430,065,600 - 30,492,188 (+)NCBIHuRef
CHM1_1430,723,442 - 31,149,754 (+)NCBICHM1_1
T2T-CHM13v2.0430,709,348 - 31,135,781 (+)NCBIT2T-CHM13v2.0
Pcdh7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39557,873,487 - 58,290,578 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl557,875,309 - 58,290,572 (+)EnsemblGRCm39 Ensembl
GRCm38557,716,145 - 58,133,236 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl557,717,967 - 58,133,230 (+)EnsemblGRCm38mm10GRCm38
MGSCv37558,109,260 - 58,523,479 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36558,006,337 - 58,017,692 (+)NCBIMGSCv36mm8
Celera555,089,145 - 55,508,003 (+)NCBICelera
Cytogenetic Map5C1NCBI
cM Map531.65NCBI
Pcdh7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544314,769,879 - 15,160,377 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495544314,765,994 - 15,160,377 (-)NCBIChiLan1.0ChiLan1.0
PCDH7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2330,953,210 - 31,381,975 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1431,160,330 - 31,585,169 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0425,111,142 - 25,535,925 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1430,365,744 - 30,789,466 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl430,366,855 - 30,370,132 (+)Ensemblpanpan1.1panPan2
PCDH7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1379,973,680 - 80,388,896 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl379,976,541 - 80,388,896 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha382,489,246 - 82,905,089 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0380,961,080 - 81,376,579 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl380,962,222 - 81,376,457 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1380,041,573 - 80,456,510 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0380,204,048 - 80,619,107 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0380,562,076 - 80,977,678 (-)NCBIUU_Cfam_GSD_1.0
Pcdh7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528545,705,695 - 46,100,519 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936482198,805 - 588,616 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936482197,723 - 588,912 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PCDH7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl823,459,475 - 23,873,007 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1823,459,475 - 23,872,204 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2824,323,016 - 24,732,096 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PCDH7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12719,204,550 - 19,631,845 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604765,698,916 - 66,124,765 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Pcdh7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247551,578,896 - 1,986,164 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247551,575,466 - 1,985,757 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Pcdh7
2050 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:42
Count of miRNA genes:34
Interacting mature miRNAs:41
Transcripts:ENSRNOT00000049245
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat
70187Pancm5Pancreatic morphology QTL 516.7pancreas mass (VT:0010144)pancreas weight to body weight ratio (CMO:0000630)143032009280829842Rat
1300154Bp189Blood pressure QTL 1893.04arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)143088377768757901Rat
2313048Bss84Bone structure and strength QTL 843.10.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)143766971982669719Rat
2313084Bss83Bone structure and strength QTL 832.90.0001tibia size trait (VT:0100001)tibia midshaft endosteal cross-sectional area (CMO:0001716)143766971982669719Rat
2313089Bss81Bone structure and strength QTL 813.40.0001body length (VT:0001256)body length, nose to rump (CMO:0000079)143766971982669719Rat
2313100Bss82Bone structure and strength QTL 8230.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143766971982669719Rat
738037Hcas6Hepatocarcinoma susceptibility QTL 62.93liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)143905723783368335Rat
70214Niddm28Non-insulin dependent diabetes mellitus QTL 284.06blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)143999825175582726Rat
631523Pia13Pristane induced arthritis QTL 133.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)144079346098037301Rat
1300136Rf22Renal function QTL 223.9renal blood flow trait (VT:2000006)absolute change in renal vascular resistance (CMO:0001900)144226252995023211Rat
1549834Scl45Serum cholesterol level QTL 455.8blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)145002321195023211Rat

Markers in Region
D14Mit8  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21452,764,625 - 52,764,770 (+)MAPPERmRatBN7.2
Rnor_6.01454,942,901 - 54,943,045NCBIRnor6.0
Rnor_5.01455,077,566 - 55,077,710UniSTSRnor5.0
RGSC_v3.41456,484,802 - 56,484,946UniSTSRGSC3.4
RGSC_v3.41457,187,009 - 57,187,154RGDRGSC3.4
RGSC_v3.41456,484,801 - 56,484,946RGDRGSC3.4
RGSC_v3.41457,187,010 - 57,187,154UniSTSRGSC3.4
RGSC_v3.11457,189,230 - 57,189,560RGD
Celera1451,941,915 - 51,942,059UniSTS
Cytogenetic Map14q11UniSTS
D14Got111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21452,862,656 - 52,862,853 (+)MAPPERmRatBN7.2
Rnor_6.01455,044,723 - 55,044,919NCBIRnor6.0
Rnor_5.01455,179,778 - 55,179,974UniSTSRnor5.0
RGSC_v3.41457,287,037 - 57,287,233UniSTSRGSC3.4
Celera1452,040,025 - 52,040,221UniSTS
Cytogenetic Map14q11UniSTS
D14Got110  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21452,862,752 - 52,862,867 (+)MAPPERmRatBN7.2
Rnor_6.01455,044,819 - 55,044,933NCBIRnor6.0
Rnor_5.01455,179,874 - 55,179,988UniSTSRnor5.0
RGSC_v3.41457,287,133 - 57,287,247UniSTSRGSC3.4
Celera1452,040,121 - 52,040,235UniSTS
Cytogenetic Map14q11UniSTS
BE102626  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21452,787,652 - 52,787,802 (+)MAPPERmRatBN7.2
Rnor_6.01454,965,318 - 54,965,467NCBIRnor6.0
Rnor_5.01455,100,373 - 55,100,522UniSTSRnor5.0
RGSC_v3.41457,212,040 - 57,212,189UniSTSRGSC3.4
Celera1451,965,030 - 51,965,179UniSTS
Cytogenetic Map14q11UniSTS
RH143022  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21452,889,281 - 52,889,446 (+)MAPPERmRatBN7.2
Rnor_6.01455,071,360 - 55,071,524NCBIRnor6.0
Rnor_5.01455,206,634 - 55,206,798UniSTSRnor5.0
RGSC_v3.41457,313,701 - 57,313,865UniSTSRGSC3.4
Celera1452,066,440 - 52,066,604UniSTS
Cytogenetic Map14q11UniSTS
BE121006  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21452,536,199 - 52,536,359 (+)MAPPERmRatBN7.2
mRatBN7.2X127,902,305 - 127,902,465 (+)MAPPERmRatBN7.2
Rnor_6.0X135,564,508 - 135,564,667NCBIRnor6.0
Rnor_6.01454,713,963 - 54,714,122NCBIRnor6.0
Rnor_5.01454,848,626 - 54,848,785UniSTSRnor5.0
Rnor_5.0X135,634,659 - 135,634,818UniSTSRnor5.0
RGSC_v3.4X135,127,481 - 135,127,640UniSTSRGSC3.4
RGSC_v3.41456,669,488 - 56,669,647UniSTSRGSC3.4
Celera1451,715,893 - 51,716,052UniSTS
CeleraX126,849,765 - 126,849,924UniSTS
Cytogenetic Map14q11UniSTS
PCDH7  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21452,900,070 - 52,900,264 (+)MAPPERmRatBN7.2
Rnor_6.01455,082,149 - 55,082,342NCBIRnor6.0
Rnor_5.01455,217,423 - 55,217,616UniSTSRnor5.0
RGSC_v3.41457,324,490 - 57,324,683UniSTSRGSC3.4
Celera1452,077,229 - 52,077,422UniSTS
Cytogenetic Map14q11UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 41 4 4 4 56 16 22 6
Low 3 2 51 35 19 35 8 9 18 19 17 5 8
Below cutoff 2 2 2 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001004087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006251023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008770189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599291 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599293 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092182 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY690613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY690614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY690615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY690616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ226048 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000049245   ⟹   ENSRNOP00000045705
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1452,890,122 - 52,899,473 (-)Ensembl
Rnor_6.0 Ensembl1455,072,200 - 55,081,551 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000107576   ⟹   ENSRNOP00000089078
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1452,475,610 - 52,902,051 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000108524   ⟹   ENSRNOP00000093042
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1452,833,068 - 52,902,051 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000109661   ⟹   ENSRNOP00000079925
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1452,896,210 - 52,932,506 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000111039   ⟹   ENSRNOP00000089275
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1452,475,610 - 52,902,051 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000113673   ⟹   ENSRNOP00000092889
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1452,691,178 - 52,902,051 (-)Ensembl
RefSeq Acc Id: NM_001004087   ⟹   NP_001004087
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,817 - 57,113,522 (-)NCBI
mRatBN7.21452,471,801 - 52,900,521 (-)NCBI
Rnor_6.01454,652,957 - 55,081,551 (-)NCBI
Rnor_5.01454,783,951 - 55,216,900 (-)NCBI
RGSC_v3.41456,609,036 - 57,323,892 (-)RGD
Celera1451,655,345 - 52,076,631 (-)RGD
Sequence:
RefSeq Acc Id: NM_001401429   ⟹   NP_001388358
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,817 - 57,113,522 (-)NCBI
mRatBN7.21452,471,801 - 52,900,521 (-)NCBI
RefSeq Acc Id: XM_006251023   ⟹   XP_006251085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81457,056,964 - 57,114,976 (-)NCBI
mRatBN7.21452,876,868 - 52,901,692 (-)NCBI
Rnor_6.01455,071,907 - 55,081,632 (-)NCBI
Rnor_5.01454,783,951 - 55,216,900 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599291   ⟹   XP_017454780
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,688,991 - 57,114,976 (-)NCBI
mRatBN7.21452,475,964 - 52,901,693 (-)NCBI
Rnor_6.01454,653,266 - 55,081,632 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599293   ⟹   XP_017454782
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,822 - 57,114,976 (-)NCBI
mRatBN7.21452,475,918 - 52,901,692 (-)NCBI
Rnor_6.01454,653,217 - 55,081,632 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039092180   ⟹   XP_038948108
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,822 - 57,114,976 (-)NCBI
mRatBN7.21452,471,801 - 52,901,694 (-)NCBI
RefSeq Acc Id: XM_039092182   ⟹   XP_038948110
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,822 - 57,114,976 (-)NCBI
mRatBN7.21452,471,801 - 52,901,694 (-)NCBI
RefSeq Acc Id: XM_063273345   ⟹   XP_063129415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,822 - 57,114,976 (-)NCBI
RefSeq Acc Id: XM_063273346   ⟹   XP_063129416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,822 - 57,114,976 (-)NCBI
RefSeq Acc Id: XM_063273347   ⟹   XP_063129417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,822 - 57,114,976 (-)NCBI
RefSeq Acc Id: XM_063273348   ⟹   XP_063129418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,822 - 57,114,976 (-)NCBI
RefSeq Acc Id: XM_063273349   ⟹   XP_063129419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,688,991 - 57,114,976 (-)NCBI
RefSeq Acc Id: XM_063273350   ⟹   XP_063129420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,684,822 - 57,114,976 (-)NCBI
RefSeq Acc Id: XM_063273351   ⟹   XP_063129421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,688,991 - 57,114,976 (-)NCBI
RefSeq Acc Id: XM_063273352   ⟹   XP_063129422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81456,894,360 - 57,114,976 (-)NCBI
RefSeq Acc Id: NP_001004087   ⟸   NM_001004087
- Peptide Label: isoform 1 precursor
- UniProtKB: Q68HB5 (UniProtKB/TrEMBL),   A0A8I6AGF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006251085   ⟸   XM_006251023
- Peptide Label: isoform X12
- UniProtKB: Q68HB8 (UniProtKB/TrEMBL),   A6IJE8 (UniProtKB/TrEMBL),   F7FNT4 (UniProtKB/TrEMBL),   A0A8I6AHU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454782   ⟸   XM_017599293
- Peptide Label: isoform X13
- UniProtKB: A0A8I6AHU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454780   ⟸   XM_017599291
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A8C1 (UniProtKB/TrEMBL),   A6IJE6 (UniProtKB/TrEMBL),   A0A8I6AGF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000045705   ⟸   ENSRNOT00000049245
RefSeq Acc Id: XP_038948110   ⟸   XM_039092182
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AGF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948108   ⟸   XM_039092180
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AGF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000089078   ⟸   ENSRNOT00000107576
RefSeq Acc Id: ENSRNOP00000079925   ⟸   ENSRNOT00000109661
RefSeq Acc Id: ENSRNOP00000092889   ⟸   ENSRNOT00000113673
RefSeq Acc Id: ENSRNOP00000093042   ⟸   ENSRNOT00000108524
RefSeq Acc Id: ENSRNOP00000089275   ⟸   ENSRNOT00000111039
RefSeq Acc Id: NP_001388358   ⟸   NM_001401429
- Peptide Label: isoform 2 precursor
- UniProtKB: Q68HB6 (UniProtKB/TrEMBL),   A0A8I6AGF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129420   ⟸   XM_063273350
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AGF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129418   ⟸   XM_063273348
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AHU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129417   ⟸   XM_063273347
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AHU7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129416   ⟸   XM_063273346
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AGF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129415   ⟸   XM_063273345
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AGF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129421   ⟸   XM_063273351
- Peptide Label: isoform X9
- UniProtKB: A0A8I6AGF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129419   ⟸   XM_063273349
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AGF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129422   ⟸   XM_063273352
- Peptide Label: isoform X11
- UniProtKB: A0A8I6AGF8 (UniProtKB/TrEMBL)
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68HB8-F1-model_v2 AlphaFold Q68HB8 1-1069 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1303209 AgrOrtholog
BioCyc Gene G2FUF-15649 BioCyc
Ensembl Genes ENSRNOG00000012367 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000063828 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000049245.6 UniProtKB/TrEMBL
  ENSRNOT00000107576 ENTREZGENE
  ENSRNOT00000107576.1 UniProtKB/TrEMBL
  ENSRNOT00000108524.1 UniProtKB/TrEMBL
  ENSRNOT00000109661.1 UniProtKB/TrEMBL
  ENSRNOT00000111039.1 UniProtKB/TrEMBL
  ENSRNOT00000113673.1 UniProtKB/TrEMBL
Gene3D-CATH Cadherins UniProtKB/TrEMBL
InterPro Cadherin UniProtKB/TrEMBL
  Cadherin-like UniProtKB/TrEMBL
  Cadherin_CS UniProtKB/TrEMBL
  Cadherin_N UniProtKB/TrEMBL
  Protocadherin UniProtKB/TrEMBL
KEGG Report rno:360942 UniProtKB/TrEMBL
NCBI Gene 360942 ENTREZGENE
PANTHER CADHERIN-87A UniProtKB/TrEMBL
  PROTOCADHERIN-7 UniProtKB/TrEMBL
Pfam Cadherin UniProtKB/TrEMBL
  Cadherin_2 UniProtKB/TrEMBL
  Protocadherin UniProtKB/TrEMBL
PhenoGen Pcdh7 PhenoGen
PRINTS CADHERIN UniProtKB/TrEMBL
PROSITE CADHERIN_1 UniProtKB/TrEMBL
  CADHERIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000012367 RatGTEx
  ENSRNOG00000063828 RatGTEx
SMART SM00112 UniProtKB/TrEMBL
Superfamily-SCOP Cadherin UniProtKB/TrEMBL
UniProt A0A8I5ZPK7_RAT UniProtKB/TrEMBL
  A0A8I6A8C1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AGF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHU7 ENTREZGENE, UniProtKB/TrEMBL
  A6IJE6 ENTREZGENE, UniProtKB/TrEMBL
  A6IJE8 ENTREZGENE, UniProtKB/TrEMBL
  F7FNT4 ENTREZGENE, UniProtKB/TrEMBL
  Q68HB5 ENTREZGENE, UniProtKB/TrEMBL
  Q68HB6 ENTREZGENE, UniProtKB/TrEMBL
  Q68HB7_RAT UniProtKB/TrEMBL
  Q68HB8 ENTREZGENE
UniProt Secondary Q68HB8 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-11-17 Pcdh7  protocadherin 7      Symbol and Name status set to approved 1299863 APPROVED
2005-07-14 Pcdh7  protocadherin 7      Symbol and Name status set to provisional 70820 PROVISIONAL