Stap1 (signal transducing adaptor family member 1) - Rat Genome Database

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Gene: Stap1 (signal transducing adaptor family member 1) Rattus norvegicus
Analyze
Symbol: Stap1
Name: signal transducing adaptor family member 1
RGD ID: 1311584
Description: Predicted to enable phosphotyrosine residue binding activity; protein tyrosine kinase activator activity; and signaling receptor binding activity. Predicted to be involved in several processes, including negative regulation of macrophage migration; positive regulation of cellular component organization; and regulation of phosphorylation. Predicted to act upstream of or within response to bacterium. Predicted to be located in mitochondrion and nucleoplasm. Predicted to be part of protein-containing complex. Orthologous to human STAP1 (signal transducing adaptor family member 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; acetamide.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC305269; MGC109040; RGD1311584; signal-transducing adaptor protein 1; similar to stem cell adaptor protein STAP-1; Stap-1; stem cell adaptor protein STAP-1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21421,950,466 - 21,981,395 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1421,952,496 - 21,981,245 (-)Ensembl
Rnor_6.01423,575,400 - 23,604,984 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1423,576,085 - 23,604,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01423,479,674 - 23,508,287 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41423,734,558 - 23,764,077 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11423,734,558 - 23,764,077 (-)NCBI
Celera1421,426,012 - 21,455,282 (-)NCBICelera
Cytogenetic Map14p21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Additional References at PubMed
PMID:10518561   PMID:10679268   PMID:12477932   PMID:17936702   PMID:18468998   PMID:19100238   PMID:20442417   PMID:23012479  


Genomics

Comparative Map Data
Stap1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21421,950,466 - 21,981,395 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl1421,952,496 - 21,981,245 (-)Ensembl
Rnor_6.01423,575,400 - 23,604,984 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1423,576,085 - 23,604,834 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01423,479,674 - 23,508,287 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41423,734,558 - 23,764,077 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.11423,734,558 - 23,764,077 (-)NCBI
Celera1421,426,012 - 21,455,282 (-)NCBICelera
Cytogenetic Map14p21NCBI
STAP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38467,558,727 - 67,607,337 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl467,558,727 - 67,607,337 (+)EnsemblGRCh38hg38GRCh38
GRCh37468,424,445 - 68,473,055 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36468,107,041 - 68,155,211 (+)NCBINCBI36hg18NCBI36
Celera465,886,843 - 65,935,009 (+)NCBI
Cytogenetic Map4q13.2NCBI
HuRef464,337,610 - 64,385,777 (+)NCBIHuRef
CHM1_1468,461,613 - 68,509,764 (+)NCBICHM1_1
T2T-CHM13v2.0471,001,810 - 71,050,419 (+)NCBI
Stap1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39586,219,446 - 86,251,859 (+)NCBIGRCm39mm39
GRCm39 Ensembl586,219,605 - 86,253,984 (+)Ensembl
GRCm38586,071,584 - 86,106,125 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl586,071,746 - 86,106,125 (+)EnsemblGRCm38mm10GRCm38
MGSCv37586,500,853 - 86,533,018 (+)NCBIGRCm37mm9NCBIm37
MGSCv36587,146,389 - 87,178,554 (+)NCBImm8
Celera583,303,792 - 83,335,974 (+)NCBICelera
Cytogenetic Map5E1NCBI
Stap1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554475,293,227 - 5,330,187 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554475,292,708 - 5,345,214 (-)NCBIChiLan1.0ChiLan1.0
STAP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1462,835,845 - 62,882,222 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl462,836,288 - 62,882,570 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0456,442,773 - 56,491,148 (-)NCBIMhudiblu_PPA_v0panPan3
STAP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11358,091,457 - 58,148,902 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1358,091,477 - 58,133,711 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1358,007,105 - 58,063,908 (+)NCBI
ROS_Cfam_1.01358,702,648 - 58,759,950 (+)NCBI
ROS_Cfam_1.0 Ensembl1358,702,657 - 58,746,463 (+)Ensembl
UMICH_Zoey_3.11358,428,932 - 58,485,817 (+)NCBI
UNSW_CanFamBas_1.01357,919,165 - 57,976,003 (+)NCBI
UU_Cfam_GSD_1.01358,929,330 - 58,986,417 (+)NCBI
Stap1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528518,314,644 - 18,350,598 (-)NCBI
SpeTri2.0NW_004936582877,241 - 908,697 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
STAP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl865,332,522 - 65,392,965 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1865,318,861 - 65,372,838 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2869,756,934 - 69,797,692 (+)NCBISscrofa10.2Sscrofa10.2susScr3
STAP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.171,330,761 - 1,380,503 (-)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl71,330,223 - 1,379,820 (-)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660661,417,432 - 1,466,864 (-)NCBIVero_WHO_p1.0
Stap1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247611,361,498 - 1,409,674 (-)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247611,361,271 - 1,409,548 (-)NCBIHetGla_female_1.0hetGla2

Position Markers
RH136935  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21421,955,775 - 21,955,958 (+)MAPPERmRatBN7.2
Rnor_6.01423,579,365 - 23,579,547NCBIRnor6.0
Rnor_5.01423,482,955 - 23,483,137UniSTSRnor5.0
RGSC_v3.41423,737,839 - 23,738,021UniSTSRGSC3.4
Celera1421,429,293 - 21,429,475UniSTS
Cytogenetic Map14p21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300159Bmd61Bone mineral density QTL 615.30.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
2300183Bmd60Bone mineral density QTL 605.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)14126541967Rat
619619Rf4Renal disease susceptibility QTL 44.10.002total urine protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)14132754612Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141131407Rat
70195Mcs8Mammary carcinoma susceptibility QTL 84.28mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)14381307424531477Rat
1331740Bw26Body weight QTL 263.028body mass (VT:0001259)body weight (CMO:0000012)14381307430767156Rat
1581500Renag1Renal agenesis QTL 1kidney development trait (VT:0000527)percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)14817066868298175Rat
1358296Ael3Aortic elastin QTL 33.70.00051aorta elastin amount (VT:0003905)aortic elastin14826709053267090Rat
2302045Pia39Pristane induced arthritis QTL 394.90.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G2a level (CMO:0002116)14826709053267090Rat
731183Pia20Pristane induced arthritis QTL 203.55joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)14908897839057237Rat
2302277Gluco38Glucose level QTL 385.8blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062228035204Rat
631839Niddm37Non-insulin dependent diabetes mellitus QTL 373.37blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)141103062295876975Rat
631212Bw5Body weight QTL55.43retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)141103081230320092Rat
1300140Srn3Serum renin concentration QTL 33.19blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)141487516830883947Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)141759376142336881Rat
631262Tcas4Tongue tumor susceptibility QTL 47.29tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)141762256142337007Rat
2313397Coatc1Coat color QTL1coat/hair pigmentation trait (VT:0010463)coat/hair color measurement (CMO:0001808)141854133263541332Rat
61420Pia6Pristane induced arthritis QTL 64.9joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)141863134542337007Rat
10755459Coatc15Coat color QTL 150.01681coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)141983694464836944Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:51
Count of miRNA genes:46
Interacting mature miRNAs:48
Transcripts:ENSRNOT00000002760
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 10 2 19 2 3 4
Low 1 15 40 32 32 5 5 12 29 28 7 5
Below cutoff 24 7 7 7 3 6 58 6 10 3

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000002760   ⟹   ENSRNOP00000002760
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1421,952,496 - 21,981,245 (-)Ensembl
Rnor_6.0 Ensembl1423,576,085 - 23,604,834 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096289   ⟹   ENSRNOP00000081110
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1421,952,496 - 21,981,245 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000114716   ⟹   ENSRNOP00000089682
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1421,957,301 - 21,981,245 (-)Ensembl
RefSeq Acc Id: NM_001025115   ⟹   NP_001020286
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21421,952,495 - 21,981,245 (-)NCBI
Rnor_6.01423,576,084 - 23,604,834 (-)NCBI
Rnor_5.01423,479,674 - 23,508,287 (-)NCBI
RGSC_v3.41423,734,558 - 23,764,077 (-)RGD
Celera1421,426,012 - 21,455,282 (-)RGD
Sequence:
RefSeq Acc Id: XM_006250812   ⟹   XP_006250874
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21421,955,710 - 21,981,395 (-)NCBI
Rnor_6.01423,579,317 - 23,604,984 (-)NCBI
Rnor_5.01423,479,674 - 23,508,287 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599181   ⟹   XP_017454670
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21421,955,710 - 21,981,395 (-)NCBI
Rnor_6.01423,579,317 - 23,604,984 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017599182   ⟹   XP_017454671
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21421,950,466 - 21,981,395 (-)NCBI
Rnor_6.01423,575,400 - 23,604,984 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001020286 (Get FASTA)   NCBI Sequence Viewer  
  XP_006250874 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454670 (Get FASTA)   NCBI Sequence Viewer  
  XP_017454671 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH91249 (Get FASTA)   NCBI Sequence Viewer  
  EDL89841 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001020286   ⟸   NM_001025115
- UniProtKB: Q5BK11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006250874   ⟸   XM_006250812
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017454671   ⟸   XM_017599182
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017454670   ⟸   XM_017599181
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000002760   ⟸   ENSRNOT00000002760
RefSeq Acc Id: ENSRNOP00000081110   ⟸   ENSRNOT00000096289
RefSeq Acc Id: ENSRNOP00000089682   ⟸   ENSRNOT00000114716
Protein Domains
PH   SH2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5BK11-F1-model_v2 AlphaFold Q5BK11 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699260
Promoter ID:EPDNEW_R9785
Type:initiation region
Name:Stap1_1
Description:signal transducing adaptor family member 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01423,604,895 - 23,604,955EPDNEW

Strain Variation

Strain Sequence Variants (MRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311584 AgrOrtholog
BioCyc Gene G2FUF-16064 BioCyc
Ensembl Genes ENSRNOG00000002014 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000002760 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000081110 ENTREZGENE
Ensembl Transcript ENSRNOT00000002760 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000096289 ENTREZGENE
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
  3.30.505.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7368126 IMAGE-MGC_LOAD
InterPro PH_like_dom UniProtKB/TrEMBL
  Pleckstrin_homology UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
  SH2_dom_sf UniProtKB/TrEMBL
  STAP1/STAP2 UniProtKB/TrEMBL
  STAP1_SH2 UniProtKB/TrEMBL
KEGG Report rno:305269 UniProtKB/TrEMBL
MGC_CLONE MGC:109040 IMAGE-MGC_LOAD
NCBI Gene 305269 ENTREZGENE
PANTHER PTHR16186 UniProtKB/TrEMBL
Pfam PF00169 UniProtKB/TrEMBL
PhenoGen Stap1 PhenoGen
PROSITE PH_DOMAIN UniProtKB/TrEMBL
  SH2 UniProtKB/TrEMBL
SMART SH2 UniProtKB/TrEMBL
  SM00233 UniProtKB/TrEMBL
Superfamily-SCOP SSF55550 UniProtKB/TrEMBL
UniProt Q5BK11 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-27 Stap1  signal transducing adaptor family member 1  RGD1311584  similar to stem cell adaptor protein STAP-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1311584  similar to stem cell adaptor protein STAP-1  RGD1311584_predicted  similar to stem cell adaptor protein STAP-1 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1311584_predicted  similar to stem cell adaptor protein STAP-1 (predicted)  LOC305269_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC305269_predicted  similar to stem cell adaptor protein STAP-1 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL